Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsIR64_06g0026001 | OGI:06075000 | 14/16 | IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | Chr06:29532800-29535334 | ||||||||
| Gene Symbol | RUBQ2, rubq2, rub1, Ubq1, Rubq1, UBQ10, Ubiqutin2, RUBI3, rubi3, UBQ3, S27a, Ubi1, UBQ5, RUB2, OsRUB2, NEDD8, RURM1 | ||||||||||
| DNA seq | ATCAATCGAATCCCCAAAATCGCAGAGAAAAAAAAATCTCCCCTCGAAGCGAAGCGTCGAATCGCCTTCTCAAGGTATGCGATTTTCTGATCCTCTCCGTTCCTCGCGTTTGATTTGATTTCCCGGCCTGTTCGTGATTGTGAGATGTTGTGGTTAGTCTCCGTTTTGCGATCTGTGGTAGATTTGAACAGGGTTAGATGGGGTTCGCGTGGTATGCTGGATCTGTGATTATGAGCGATGCTGTTCGTGGTCCAAGTATTGATTGGTTCGGATCTAGAAGTAGAACTGTGCTAGGGTTGTGATTTGTTCCGATCTGTTCAATCAGTAGGATTTAGTCTCTGTTTTTCTCGTTGATCCAAGTAGCAGCTTCAGGTATATTTTGCTTAGGTTGTTTTTGATTCAGTCCCTCTAGTTGCATAGATTCTACTCTGTTCATGTTTAATCTAAGGGCTGCGTCTTGTTGATTAGTGATTACATAGCATAGCTTTCAGGATATTTTACTTGCTTATGCCTATCTTATCAACTGTTGCACCTGTAAATTCTAGCCTATGTTAATTAACCTGCCTTATGTGCTCTCGGGATAGTGCTAGTAGTTATTGAATCAGTTTGCCGATGGAATTCTAGTAGTTCATAGACCTGCAGATTATTTTTGTGAACTCGAGCACGGTGCGTCTCTCTATTTTGTTAGGTCACTGTTGGTGTTGATAGGTACACTGATGTTATTGTGGTTTAGATCGTGTATCTAACATATTGGAATAATTTGATTGACTGATTTCTGCTGTACTTGCTTGGTATTGTTATAATTTCATGTTCATAGTTGCTGACCATGCTTCGGTAATTGTGTGTGCAGATGCAGATCTTTGTGAAGACCCTCACCGGCAAGACCATCACCCTCGAGGTTGAGTCCTCGGACACCATTGACAATGTCAAGGCCAAGATCCAGGACAAGGAGGGCATCCCCCCGGACCAGCAGCGTCTCATCTTCGCTGGCAAGCAGCTTGAGGATGGCCGCACCCTGGCCGACTACAACATCCAGAAGGAGTCCACCCTCCACCTTGTGCTCAGGCTCAGGGGAGGCATGCAGATCTTCGTCAAGACCTTGACTGGCAAGACCATCACCCTTGAGGTCGAGTCGTCTGACACCATTGACAATGTCAAGGCCAAGATCCAGGACAAGGAGGGCATCCCCCCGGACCAGCAGCGTCTCATCTTCGCTGGCAAGCAGCTTGAGGATGGCCGCACCCTGGCTGACTACAACATCCAGAAGGAGTCCACCCTCCACCTTGTGCTCAGGCTCAGGGGAGGCATGCAGATCTTCGTCAAGACCTTGACTGGCAAGACCATCACCCTCGAGGTCGAGTCGTCTGACACCATTGACAATGTCAAGGCCAAGATCCAGGACAAGGAGGGCATCCCCCCAGACCAGCAGCGTCTCATCTTCGCCGGCAAGCAGCTGGAGGATGGCCGCACCCTTGCTGACTACAACATCCAGAAGGAGTCCACCCTCCACCTTGTGCTCAGGCTCAGGGGAGGTATGCAGATCTTCGTCAAGACCCTGACCGGCAAGACCATCACCCTCGAGGTCGAGTCCTCGGACACGATCGACAATGTGAAAGCCAAGATCCAGGACAAGGAGGGCATCCCCCCGGACCAGCAGCGTCTCATCTTTGCTGGCAAGCAGCTGGAGGATGGCCGCACCCTTGCCGACTACAACATCCAGAAGGAGTCCACCCTCCACCTTGTGCTCAGGCTCAGGGGTGGTATGCAGATCTTCGTCAAGACCCTGACCGGCAAGACCATCACGCTTGAGGTCGAGTCCTCGGACACGATCGACAATGTGAAGGCCAAGATCCAGGACAAGGAGGGTATCCCCCCGGACCAGCAGCGTCTCATCTTCGCCGGCAAGCAGCTGGAGGATGGCCGCACCTTGGCTGACTACAACATCCAGAAGGAGTCCACCCTTCACCTGGTTCTCAGGCTCAGGGGTGGGATGCAGATCTTCGTGAAGACCCTGACTGGCAAGACCATTACCCTTGAGGTTGAGTCGTCCGACACTATTGACAACGTGAAGGCGAAGATCCAGGACAAGGAGGGCATCCCCCCGGACCAGCAGCGTCTGATCTTTGCTGGTAAGCAGCTTGAGGATGGCCGCACCCTTGCGGATTACAACATCCAGAAGGAGTCCACACTCCACCTGGTGCTCCGCCTCCGTGGTGGCCAGTAAGTCCTCAGCCATGGAGCTGCTGCTGTTCTAGGGTTCACAAGTCTGCCTATTGTCTTCCCCAATGGAGCTATGGTTGTCTGGTCTGGTCCTTGGTCGTGTCCCGTTTCATTGTGTACTATTTACCTGTAATGTGTATCCTTAAGTCTGGTTTGATGGTGTCTGAAACGTTTTGCTGTGGTAGAGCAGCATGGAAGAACTATAATGAATAAGTGATCCCTAATCATTGTGTCCAAATTTTGCTTCTGCTATACCCTTTTGTGCTGTTTCTTATATTTTGCTTAAAAATTTGATCTGAAACAAATGTCTAAATT
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| CDS seq | ATTGACAATGTCAAGGCCAAGATCCAGGACAAGGAGGGCATCCCCCCAGACCAGCAGCGTCTCATCTTCGCCGGCAAGCAGCTGGAGGATGGCCGCACCCTTGCTGACTACAACATCCAGAAGGAGTCCACCCTCCACCTTGTGCTCAGGCTCAGGGGAGGTATGCAGATCTTCGTCAAGACCCTGACCGGCAAGACCATCACCCTCGAGGTCGAGTCCTCGGACACGATCGACAATGTGAAAGCCAAGATCCAGGACAAGGAGGGCATCCCCCCGGACCAGCAGCGTCTCATCTTTGCTGGCAAGCAGCTGGAGGATGGCCGCACCCTTGCCGACTACAACATCCAGAAGGAGTCCACCCTCCACCTTGTGCTCAGGCTCAGGGGTGGTATGCAGATCTTCGTCAAGACCCTGACCGGCAAGACCATCACGCTTGAGGTCGAGTCCTCGGACACGATCGACAATGTGAAGGCCAAGATCCAGGACAAGGAGGGTATCCCCCCGGACCAGCAGCGTCTCATCTTCGCCGGCAAGCAGCTGGAGGATGGCCGCACCTTGGCTGACTACAACATCCAGAAGGAGTCCACCCTTCACCTGGTTCTCAGGCTCAGGGGTGGGATGCAGATCTTCGTGAAGACCCTGACTGGCAAGACCATTACCCTTGAGGTTGAGTCGTCCGACACTATTGACAACGTGAAGGCGAAGATCCAGGACAAGGAGGGCATCCCCCCGGACCAGCAGCGTCTGATCTTTGCTGGTAAGCAGCTTGAGGATGGCCGCACCCTTGCGGATTACAACATCCAGAAGGAGTCCACACTCCACCTGGTGCTCCGCCTCCGTGGTGGC
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| Protein seq | IDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG |
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| Function | Polyubiquitin 4 [UniProtKB/Swiss-Prot:P0CH32] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsIR64_06g0026001 | OsIR64_06g0026001.01 | Chr06 | 29532800 | 29535270 | + | IsoSeq | ||
| CDS seq | ATGTCAAGGCCAAGATCCAGGACAAGGAGGGCATCCCCCCGGACCAGCAGCGTCTCATCTTCGCTGGCAAGCAGCTTGAGGATGGCCGCACCCTGGCCGACTACAACATCCAGAAGGAGTCCACCCTCCACCTTGTGCTCAGGCTCAGGGGAGGCATGCAGATCTTCGTCAAGA |
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| Protein seq | MSRPRSRTRRASPRTSSVSSSLASSLRMAAPWPTTTSRRSPPSTLCSGSGEACRSSSR |
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsIR64_06g0026001 | OsIR64_06g0026001.02 | Chr06 | 29532800 | 29535183 | + | IsoSeq | ||
| CDS seq | ATGTCAAGGCCAAGATCCAGGACAAGGAGGGCATCCCCCCGGACCAGCAGCGTCTCATCTTCGCTGGCAAGCAGCTTGAGGATGGCCGCACCCTGGCCGACTACAACATCCAGAAGGAGTCCACCCTCCACCTTGTGCTCAGGCTCAGGGGAGGCATGCAGATCTTCGTCAAGA |
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| Protein seq | MSRPRSRTRRASPRTSSVSSSLASSLRMAAPWPTTTSRRSPPSTLCSGSGEACRSSSR |
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsIR64_06g0026001 | OsIR64_06g0026001.03 | Chr06 | 29532800 | 29535254 | + | IsoSeq | ||
| CDS seq | ATGTCAAGGCCAAGATCCAGGACAAGGAGGGCATCCCCCCGGACCAGCAGCGTCTCATCTTCGCTGGCAAGCAGCTTGAGGATGGCCGCACCCTGGCCGACTACAACATCCAGAAGGAGTCCACCCTCCACCTTGTGCTCAGGCTCAGGGGAGGCATGCAGATCTTCGTCAAGA |
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| Protein seq | MSRPRSRTRRASPRTSSVSSSLASSLRMAAPWPTTTSRRSPPSTLCSGSGEACRSSSR |
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsIR64_06g0026001 | OsIR64_06g0026001.04 | Chr06 | 29532800 | 29535334 | + | IsoSeq | ||
| CDS seq | ATGTCAAGGCCAAGATCCAGGACAAGGAGGGCATCCCCCCGGACCAGCAGCGTCTCATCTTCGCTGGCAAGCAGCTTGAGGATGGCCGCACCCTGGCCGACTACAACATCCAGAAGGAGTCCACCCTCCACCTTGTGCTCAGGCTCAGGGGAGGCATGCAGATCTTCGTCAAGA |
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| Protein seq | MSRPRSRTRRASPRTSSVSSSLASSLRMAAPWPTTTSRRSPPSTLCSGSGEACRSSSR |
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsIR64_06g0026001 | OsIR64_06g0026001.05 | Chr06 | 29534171 | 29535270 | + | IsoSeq | ||
| CDS seq | ATTGACAATGTCAAGGCCAAGATCCAGGACAAGGAGGGCATCCCCCCAGACCAGCAGCGTCTCATCTTCGCCGGCAAGCAGCTGGAGGATGGCCGCACCCTTGCTGACTACAACATCCAGAAGGAGTCCACCCTCCACCTTGTGCTCAGGCTCAGGGGAGGTATGCAGATCTTCGTCAAGACCCTGACCGGCAAGACCATCACCCTCGAGGTCGAGTCCTCGGACACGATCGACAATGTGAAAGCCAAGATCCAGGACAAGGAGGGCATCCCCCCGGACCAGCAGCGTCTCATCTTTGCTGGCAAGCAGCTGGAGGATGGCCGCACCCTTGCCGACTACAACATCCAGAAGGAGTCCACCCTCCACCTTGTGCTCAGGCTCAGGGGTGGTATGCAGATCTTCGTCAAGACCCTGACCGGCAAGACCATCACGCTTGAGGTCGAGTCCTCGGACACGATCGACAATGTGAAGGCCAAGATCCAGGACAAGGAGGGTATCCCCCCGGACCAGCAGCGTCTCATCTTCGCCGGCAAGCAGCTGGAGGATGGCCGCACCTTGGCTGACTACAACATCCAGAAGGAGTCCACCCTTCACCTGGTTCTCAGGCTCAGGGGTGGGATGCAGATCTTCGTGAAGACCCTGACTGGCAAGACCATTACCCTTGAGGTTGAGTCGTCCGACACTATTGACAACGTGAAGGCGAAGATCCAGGACAAGGAGGGCATCCCCCCGGACCAGCAGCGTCTGATCTTTGCTGGTAAGCAGCTTGAGGATGGCCGCACCCTTGCGGATTACAACATCCAGAAGGAGTCCACACTCCACCTGGTGCTCCGCCTCCGTGGTGGC
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| Protein seq | IDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 8.491142 | 14.054948 | 25.362541 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_06g0650100 | RBH | 4.300578 | 6.428188 | 8.782232 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os06g46770 | RBH | 83.202942 | 76.968407 | 42.352703 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os06g0673500 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_02g0004771 | RBH | 23.611549 | 747.267395 | 279.629150 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_06g0026321 | RBH | 19.307150 | 171.160156 | 135.050400 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_10g0018460 | SBH | 0.0 | 14.174821 | 0.0 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_10g0019010 | SBH | 0.0 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_06g0016540 | SBH | 45.610970 | 87.886429 | 74.387085 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_06G0438700 | RBH | 0.5623605 | 0.328252 | 2.9893295 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_10g0018610 | RBH | 0.0 | 0.0 | 0.0 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_06G0398700 | RBH | 7.2088935 | 8.0350205 | 44.6755295 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_06g0026451 | RBH | 17.024366 | 6.984823 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_06g0016360 | SBH | 6.131448 | 86.787209 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_06g0016040 | SBH | 40.531155 | 107.599434 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_10g0018410 | SBH | 0.0 | 0.0 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_10g0018920 | SBH | 0.0 | 0.578617 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_02G004751 | RBH | 9.700830 | 34.566254 | 65.454994 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_10g0018760 | SBH | 0.0 | 0.0 | 0.0 |
