Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLaMu_10g0018920 | OGI:10064460 | 16/16 | LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | Chr10:23213007-23213252 | ||||||||
| Gene Symbol | RUBQ2, rubq2, rub1, Ubq1, Rubq1, UBQ10, Ubiqutin2, RUBI3, rubi3, UBQ3, UBQ5, RUB2, OsRUB2, NEDD8, Ubi1, - | ||||||||||
| DNA seq | atgagcatgataacggtgaaggtgaagacgctgacggggaaggaggtggaggtgagcatcgaggcgacggagacggtggcgaggatcaaggagcaggtggaggcggcggaggggatcccgccgccgcagcagacgctgatctacggcggcaggcagctcgccgacgacatgaccgccgagatgtgcgacctcaggcatggctccgagctgcacctcgttcttgctctcaggggtggactactttga |
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| CDS seq | atgagcatgataacggtgaaggtgaagacgctgacggggaaggaggtggaggtgagcatcgaggcgacggagacggtggcgaggatcaaggagcaggtggaggcggcggaggggatcccgccgccgcagcagacgctgatctacggcggcaggcagctcgccgacgacatgaccgccgagatgtgcgacctcaggcatggctccgagctgcacctcgttcttgctctcaggggtggactactttga |
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| Protein seq | MSMITVKVKTLTGKEVEVSIEATETVARIKEQVEAAEGIPPPQQTLIYGGRQLADDMTAEMCDLRHGSELHLVLALRGGLL |
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| Function | Ubiquitin-NEDD8-like protein RUB2 [UniProtKB/Swiss-Prot:Q8RUC6] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLaMu_10g0018920 | OsLaMu_10g0018920.01 | Chr10 | 23213007 | 23213252 | + | NAM | ||
| CDS seq | atgagcatgataacggtgaaggtgaagacgctgacggggaaggaggtggaggtgagcatcgaggcgacggagacggtggcgaggatcaaggagcaggtggaggcggcggaggggatcccgccgccgcagcagacgctgatctacggcggcaggcagctcgccgacgacatgaccgccgagatgtgcgacctcaggcatggctccgagctgcacctcgttcttgctctcaggggtggactactttga
More
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| Protein seq | MSMITVKVKTLTGKEVEVSIEATETVARIKEQVEAAEGIPPPQQTLIYGGRQLADDMTAEMCDLRHGSELHLVLALRGGLL |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.578617 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_10g0491801 | SBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os10g39590 | RBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os10g0491801 | SBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_10g0018680 | RBH | 0.0 | 17.272406 | 0.0 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_10g0019050 | RBH | 0.0 | 0.0 | 0.0 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_10g0018460 | RBH | 0.0 | 14.174821 | 0.0 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_10g0019010 | RBH | 0.0 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_10g0018750 | RBH | 0.0 | 6.646650 | 0.0 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_10G0349000 | RBH | 0.055529 | 0.94455 | 0 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_10g0018610 | RBH | 0.0 | 0.0 | 0.0 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_10G0374300 | RBH | 0.134549 | 0.662441 | 0 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_10g0018360 | RBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_10g0018300 | RBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_10g0018820 | RBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_10g0018410 | RBH | 0.0 | 0.0 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_10G018690 | RBH | 0.0 | 0.0 | 0.0 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_10g0018760 | RBH | 0.0 | 0.0 | 0.0 |
