Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsNip_10g0491801 | OGI:06075000 | 14/16 | Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | Chr10:18666474-18667000 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | CATCAGGTAAGTCCACACTTGCCGCAGGTGAGTCAGTCGTGGTGCTTCGCCATAAGTGCGCCAACGTCTTTGCACTCTGGGTTAGGACACATCAGTCGTAGCCTCTCCACCTTCCCCATCACGTCATCGACACGATAGTGACGGAGCACCGCAAGCTCTTCCTTGCGGTGCTCATGCTTTCCCTTCTTAGGTGTCGCGTACGCCTTCTTCTTTCGCTTCTTGTTGCCGCCGCCGCCACCACAGATGCGACCGAGGAGGTGCAGCGTCGACTCCTCCTGAATACCATAGTAGATTAGCGTGTGGCCGTCGTCCAGCTGATGCCCCTGGAAGATGAGCGGCTGCTGGTCTGGCGGAAGCCCCTCCTTGTCCACGAGCTTCACCTTCACGCTCTCCACCGTATCCGACGGCTCCATCCTCAGAGCCGTCGTCTTCCCTGTCAGCCCTTTCACAAATATCTGCGTCATCACCGTCGACATCGCCGGCCGCCGGGGTTCCGCGAGATCGTGTGGCGTGTGCCCTAGGTTGTG
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| CDS seq | ATGTCGACGGTGATGACGCAGATATTTGTGAAAGGGCTGACAGGGAAGACGACGGCTCTGAGGATGGAGCCGTCGGATACGGTGGAGAGCGTGAAGGTGAAGCTCGTGGACAAGGAGGGGCTTCCGCCAGACCAGCAGCCGCTCATCTTCCAGGGGCATCAGCTGGACGACGGCCACACGCTAATCTACTATGGTATTCAGGAGGAGTCGACGCTGCACCTCCTCGGTCGCATCTGTGGTGGCGGCGGCGGCAACAAGAAGCGAAAGAAGAAGGCGTACGCGACACCTAAGAAGGGAAAGCATGAGCACCGCAAGGAAGAGCTTGCGGTGCTCCGTCACTATCGTGTCGATGACGTGATGGGGAAGGTGGAGAGGCTACGACTGATGTGTCCTAACCCAGAGTGCAAAGACGTTGGCGCACTTATGGCGAAGCACCACGACTGA
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| Protein seq | MSTVMTQIFVKGLTGKTTALRMEPSDTVESVKVKLVDKEGLPPDQQPLIFQGHQLDDGHTLIYYGIQEESTLHLLGRICGGGGGNKKRKKKAYATPKKGKHEHRKEELAVLRHYRVDDVMGKVERLRLMCPNPECKDVGALMAKHHD |
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| Function | Ubiquitin-40S ribosomal protein S27a [UniProtKB/Swiss-Prot:P79781] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNip_10g0491801 | OsNip_10t0491801-00 | Chr10 | 18666474 | 18667000 | - | RAP2018-11-26 | ||
| CDS seq | ATGTCGACGGTGATGACGCAGATATTTGTGAAAGGGCTGACAGGGAAGACGACGGCTCTGAGGATGGAGCCGTCGGATACGGTGGAGAGCGTGAAGGTGAAGCTCGTGGACAAGGAGGGGCTTCCGCCAGACCAGCAGCCGCTCATCTTCCAGGGGCATCAGCTGGACGACGGCCACACGCTAATCTACTATGGTATTCAGGAGGAGTCGACGCTGCACCTCCTCGGTCGCATCTGTGGTGGCGGCGGCGGCAACAAGAAGCGAAAGAAGAAGGCGTACGCGACACCTAAGAAGGGAAAGCATGAGCACCGCAAGGAAGAGCTTGCGGTGCTCCGTCACTATCGTGTCGATGACGTGATGGGGAAGGTGGAGAGGCTACGACTGATGTGTCCTAACCCAGAGTGCAAAGACGTTGGCGCACTTATGGCGAAGCACCACGACTGA
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| Protein seq | MSTVMTQIFVKGLTGKTTALRMEPSDTVESVKVKLVDKEGLPPDQQPLIFQGHQLDDGHTLIYYGIQEESTLHLLGRICGGGGGNKKRKKKAYATPKKGKHEHRKEELAVLRHYRVDDVMGKVERLRLMCPNPECKDVGALMAKHHD |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | 0.0 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_06g0681400 | SBH | 128.911606 | 119.807053 | 172.056442 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os10g34990 | RBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os10g0491801 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_10g0015590 | RBH | 0.0 | 0.0 | 0.0 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_10g0019050 | RBH | 0.0 | 0.0 | 0.0 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_10g0018460 | RBH | 0.0 | 14.174821 | 0.0 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_10g0019010 | RBH | 0.0 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_10g0015510 | RBH | 0.0 | 0.0 | 0.0 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_10G0309000 | RBH | 0 | 0 | 0.1255115 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_10g0015460 | RBH | 0.0 | 0.0 | 0.0 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_10G0331600 | RBH | 0 | 0 | 0 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_10g0015220 | RBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_10g0015120 | RBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_10g0015520 | RBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_10g0018410 | RBH | 0.0 | 0.0 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_10g0015750 | RBH | 0.0 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_10G018690 | RBH | 0.0 | 0.0 | 0.0 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_10g0018760 | RBH | 0.0 | 0.0 | 0.0 |
