Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLima_10g0015220 | OGI:06075000 | 14/16 | LIMA | Os127564RS1 | Gramene(+IsoSeq) | Chr10:20819650-20823200 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | TCATGTTATCTGAAAAAAAAAACTATATGGAGCTTTTATGTAATACAGACAGATGATAGAATAATAAAACAATATTGGTACCGTAAGTAAAATAAAAAAAAATGTTGCATCGATCTCGGTGGATCTCCGTGTTATAACAGACAACATATATAAAACAAATTTTGGAACAAAGTGTGTTGAGGAATTTAGAATTCGGATGTGAGGGAAAATGGTAACAGGGAGCATCAGAAGCCGTCCAAAGCTGATCCAAGTGTGCACTGATCTACATGCAGCAGCACAACGGTAAAACAACGGTGTGTGCTGTGTTAAATTTAATCAACATTGGCTTTTTAATAAAGCGTACGGTCAGTCCTTAACTTATGGTCGTGTCATATACGTTCTGGAACTCTCAAAATCAGAACTTGGTACTTAAATTATATAATTCCGATTTTAAATTACCAAGATATCTCCGGGATCATATATATCATTGATGTGACATGTCACACGGATGATGATGTGGCATCATCACTAATCCTACACCGACTTACATGTGACTCTTGTAGTCGCCGTCCTAGAGTGGTCCAAATGAAGAAGAGAAAAAAATAAAAGAAGAAAAGGAAAATACTTTTTAAGTGGACTTCATTTATCACTCTGTGTATGTAGCGTATCTAAATTTATAGCTAGAATCTTTTTTATTAAGGGTATTTGTAAACATGTTTAGATTTATAGCTAAAATTATTTTTCTGAACATGTATGTACCCAGATATGCAAATGTTAGTTGTAGTGATATTTTCATTCGATATACTACTGTGCCAAAACACATTGATTTTTTTTATAAAGGAAAGGCAAGAGGTTTTGGCTTATATAGGCTGATTTATTTTGCTAACTTTCTCAACTCATCTTCCTCGTGTTCCACGCGCACGCTTTTCAAACTGCTAAACGGTATATTTTTTAAAAAAGTTTATATACGGAAGTTGCTTAAAAAATCATATTAATCCATTTTTTTAAAAAAATAGGTAATACTTAATTAATCATGCGCTAATGAACCGCTCCATTTTCCGTGCGCAGCAAATGGGTTACAAACGAACACTACTGGAGAAACCATCTTTGGTCAGTTGCCCAAAATTCACAACAGTCCCGATTCACTAAAAGACCGGGACTAAAAAGCATATTTAGTCCCGGTTTATAAGTGTAAGGGGACTATGTGATCTTTAGTCACCAATCAGGACTCTTTAGTCCCGGTTCACCTCGTGTCAAAGGTTGTTGTTCTCAACCGGGACTTAAAAAATCAATATAACGTATATAATCCCTTACTCTTATCCTCAAAAATTTATATCTCCTATTCCTCATCCTCTCTCCCTCACTCTTATCCTCTCCTTACCTTCCTATTCCTCCTCCTCTCTCCCTCACTCTCAGTCTTATCCTCTCGGTGAGAAGCGGCAGGACCTGAGCGGACGGGGCGAGGCGACGGGAGAAGCAGCGGCCGAGGCGGCGGCAGGCGGCAGCAGCTCACGGCATGAGGCGGCGACAGCCGGATTTCATTTTTTTCTTTTTTTTAATAATTTGTGTTTCATTGGATCTGTGTTATTTGATCAGTGATGTATTTGTGATCTATGATGAATTTGTGATGTAATTTTTTTTAGAATCTGTGATGTTTTTTATTTTGACAATATGTGACGTGAATAATATGATTTGTGATGCTGTTACTTTGATTTAGGGATGTAGGGAGCCTCTCGATTTGAAATGTGTGATGATTTTGTGATTTTGGTGAGATTGGTGTGAAATCAATATGCAAAGAATAATGAAAAAAAAAAGAAGGATAGGAACCAGAGACGTGGCGCTAGCCTCACCAACCGGGACCAAAGATTCTCCTCTTTACTCCCGGTTGGTGTTATTAACCGGGGGTCTTTAATCCCAGGTATTTGAACCGGGACTAAAGATAGCGATCTTTAGTCCTGGATTCTTAGTACTGGTTGGAAAACCAGTACTATAGGGGTTACCAACCGGGAGTAAAAGACATTTCCCCACCAGTGGAACACAGCCATATTGATAGAGTAGAGCTAAGGGTTGGGCCTCAGAAAAAATATGTATAGGACATGATCAAATAGAGCCAATGTCGGCAAAAGAAAGCTCCAGAAAAATCACTCTCCCAAAGGTTGCAACCCCGCGAGGTCTTGGGTTCCTGCCCTTCGCCACGATACATCGTCTTCGATTATCTAGATGATTATTATTGGCATCGACTAATAAACATTTAAACAACATATGGTAAGTGGTAAGACATAGAACACTCTGATTACACACTGTTCTTTGGAAGAATTTCTGCAGAGTACTACTACTACTAAACAAGCAAAACATCACCAGAATTCAAGGACAGTACAAGATCAGGACAGGGCCGGAACCATAATACCAGAAATAACGAGCAACTAATTAATTGATCGACTCGAACAATGAAAGAAATTAAACGCTAACTAAGGACACCCACAATGGTTATCTATAGCTCTCTACAAGAGATTCATGTTAGTATATTTTTCTACTTGGAAGAGATTAAATGAAGAGAGAGCAAAGCTATCTACTAGCCTAAAGATAGTCTATAGAGAAAAACGAGGCAATGGATTAGAGAGCTATAGATACTCATGTAGACATACTATTGATAAGGTGGTTTACTGTTAATCTAGTCTATTGCTGAGATATATATGTTTTATAGAGAGCACCTTACTTTACTATTGCGGATGCTCTAATTACTGCTTGATTGATGGGTGAGCTATCTGATGCCTTTAATTTTGTATCTATGACTTGAGATATCTGCAGCTACATATACAACTTTCGAGACGTACGCAAAGGTACAACGTCGACTCCTCGATGCCGTAGGAGGCCAGCGTGCGGTCGTCCGCAAGCTCCATACCGGAGAAAACCAGCCGTTGCTTGCACGGCATGGTCTTCTTCTTCTTCCTGTAGTACAGCTTCACCTTCACGCTTCCCACCGTGTCCGACGGCTGCACCTTCAGCGCCGTCGCCTTCTTCCCCCCGAGCACTCTCACGAAGATCTGCATCTCATCCGTAGCAGCAGGTTGAGTCGTTAGGGTTTGATGATGCTCTTGGATCAGTTTCTGCGCCTCCATGTGCGTGCGGATGCAGTCGCAGCTGGCGAGGCGGCCGCAGAGGTTCAGGTACGAGTGCTTGCGGATGCCGCAGGAGGCCACCGTGTCGCCGTCGTCGAGCTGCCTCCCCTCGAAGATCAGCCGCTGCTGGCACGGCGGCAGCCCGTCCTTCTCCTGGAGCTGTAGCTTGACGCTCTCCACTGTGTCCGACGGCTCCACCCACAGCGTCCAGGTGTTCCCCCTGAGCCCGCTCACTAAGATCTGCATCTCCGTAGCGGGGTCGCGGATGCCGTAGTCGGCCAGCGTGCGATGACCGTCGGCCTCATCCATCTGCTTTCCGTCGTACGCCAACCCGAAGTCCTCGGTGATCCCCGACATGGCCTTGATCTTCGCCTTCACGCTCTCCACCGTGTCCGACGGCTCCACTTCCAGCGTCAACGTGGCCCCCGTGATCAGGTCCACGGGGATCTGCAT
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| CDS seq | ATGCAGATCTTCGTGAGAGTGCTCGGGGGGAAGAAGGCGACGGCGCTGAAGGTGCAGCCGTCGGACACGGTGGGAAGCGTGAAGGTGAAGCTGTACTACAGGAAGAAGAAGAAGACCATGCCGTGCAAGCAACGGCTGGTTTTCTCCGGTATGGAGCTTGCGGACGACCGCACGCTGGCCTCCTACGGCATCGAGGAGTCGACGTTGTACCTTTGCATAACATGA |
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| Protein seq | MQIFVRVLGGKKATALKVQPSDTVGSVKVKLYYRKKKKTMPCKQRLVFSGMELADDRTLASYGIEESTLYLCIT |
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| Function | Ubiquitin [UniProtKB/Swiss-Prot:P62975] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLima_10g0015220 | OsLima_10g0015220.01 | Chr10 | 20819650 | 20823200 | - | NAM | ||
| CDS seq | ATGCAGATCTTCGTGAGAGTGCTCGGGGGGAAGAAGGCGACGGCGCTGAAGGTGCAGCCGTCGGACACGGTGGGAAGCGTGAAGGTGAAGCTGTACTACAGGAAGAAGAAGAAGACCATGCCGTGCAAGCAACGGCTGGTTTTCTCCGGTATGGAGCTTGCGGACGACCGCACGCTGGCCTCCTACGGCATCGAGGAGTCGACGTTGTACCTTTGCATAACATGA
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| Protein seq | MQIFVRVLGGKKATALKVQPSDTVGSVKVKLYYRKKKKTMPCKQRLVFSGMELADDRTLASYGIEESTLYLCIT |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_10g0491801 | RBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os10g34960 | RBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os10g0491801 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_10g0015590 | RBH | 0.0 | 0.0 | 0.0 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_10g0015830 | RBH | 0.0 | 0.0 | 0.0 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_10g0015510 | RBH | 0.0 | 0.0 | 0.0 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_10G0309000 | RBH | 0 | 0 | 0.1255115 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_10g0015460 | RBH | 0.0 | 0.0 | 0.0 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_10G0331200 | RBH | 0 | 0 | 0 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_06g0026451 | SBH | 17.024366 | 6.984823 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_10g0015120 | RBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_10g0015520 | RBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_10g0015750 | RBH | 0.0 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_10G015390 | RBH | 0.0 | 0.0 | 0.0 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
