Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsKeNa_10g0015830 | OGI:06075000 | 14/16 | KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | Chr10:21461715-21463821 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | ctagtgtcgtcgttgccaccggtggactgaatcagccgccagcgccatacgtgcgtgggctcggaagacattcgcacggatcgggcgcacggtggcctctagcgccagctggatctcctccatccgccgccccttctccccgccggtcaccatccttctccctgccgccattggtcgttgcgcctggagagaggagatttgaaatgtgtgatgattttatgattttggtgagattggtgtgaaatcaatatgcaaagaataatgAaaaaaaaaaaggataggaaccagagacgtggcgctagcctcaccaaccgggaccaaagattttcctctttactcccggttggtgttactaaccgaggatctttaatcccaggtatttgaaccGggactaaagatagcgatctttagtcttggattcttagtactggttggttaccaaccgggagtaaaagacatttccccaccagtagaacacagccatattgatagagtagagctaatggttgggcctcagaaaaaatatgtataggacatgatcaaatagagccaatgtcggcaaaagaaagctccagaaaaatcactctcccaaaggttgcaaccccgcgaggtcttgggttcctgcccttcgccacgatacatcgtcttcgattatctagatgattattattggcatcgactaataaacatttaaacaacatatggtaagtggtaagacatagaacactctgattacacactgttctttggaagaatttctgcagagtactactactactaaacaagcaaaacatcaccagaattcaaggccagtacaagatcaggacacggccggaaccataataccagaaataacgagcaactaattaattgatcgactcgaacaatgaaagaaattaagcgctaactaagagcacccacaatagttatctatggctctctatgagagattcatgtcggtatatttttctacttagaagagattaaataaAGagagagagtaaagctatctactaaactgaagatagtctatagagaaaaacgaggcaatggattagagagctatagatacccatgtagacatactattgatcaggtggtttactgttaatctagtctattgctgagatgtacatgttttataaagaataccttactttaccattgcaattactgcgtgattgatgggtgagctatctggtgcctttaattttgtatccatgacttgagatatctgcagctacagatacaactttcgagacgtacgcaaaggtacaacgtcgactcctcctcgatgccgtaggaggccagcgtgcggtcgtccgcaagctccataccggagaaaaccagccgttgcttgcacggcatggtcttcttcttcttcctgtagtacagcttcaccttcacgcttcccaccgtgtccgacggctgcaccttcagcgccgtcgccttcttccccccgagcactctcacgaagatctgcatctcatccgtagcagcaggtcgagtcgttagggtttgatgatgctcttggatcagtttctgcgcctccatgtgcgtgcggatgcagtcgcagctggcgaggcggccgcagaggttcaggtacgagtgcttgcggatgccgcaggaggccaccgtgtcgccgtcgtcgagctgcctcccctcgaagatcagccgctgctggcacggcggcagcccgtccttctcctggagctgtagcttgacgctctccaccgtgtccgacggctccacccacagcgtccaggtgttccccctgagcccgctcactaagatctgcatctccgtagcggggtcgcggatgccgtagtcggccagcgtgcgatgaccgtcggcctcatccatctgctttccgtcgtacgccaacccgaagtcctcagtgatccccgacatggccttgatcttcgccttcacgctctccaccgtgtccgacggctccacttccagcgtcaacgtggcccccgtgatcaggtccacggggatctgcatcctcttCcccctggaattaatcgtcgccgccggccaccacagtttcgtccaggtcacgatcgagctggtgttgctctggttgttgcgcggctgcgtgact
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| CDS seq | atgcagatccccgtggacctgatcacgggggccacgttgacgctggaagtggagccgtcggacacggtggagagcgtgaaggcgaagatcaaggccatgtcggggatcactgaggacttcgggttggcctgcgactgcatccgcacgcacatggaggcgcagaaactgatccaagagcatcatcaaaccctaacgactcgacctgctgctacggatgagatgcagatcttcgtgagagtgctcggggggaagaaggcgacggcgctgaaggtgcagccgtcggacacggtgggaagcgtgaaggtgaagctgtactacaggaagaagaagaagaccatgccgtgcaagcaacggctggttttctccggtatggagcttgcggacgaccgcacgctggcctcctacggcatcgaggaggagtcgacgttgtacctttgcctggcgctagaggccaccgtgcgcccgatccgtgcgaatgtcttccgagcccacgcacgtatggcgctggcggctgattcagtccaccggtggcaacgacgacactag
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| Protein seq | MQIPVDLITGATLTLEVEPSDTVESVKAKIKAMSGITEDFGLACDCIRTHMEAQKLIQEHHQTLTTRPAATDEMQIFVRVLGGKKATALKVQPSDTVGSVKVKLYYRKKKKTMPCKQRLVFSGMELADDRTLASYGIEEESTLYLCLALEATVRPIRANVFRAHARMALAADSVHRWQRRH |
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| Function | Polyubiquitin-B [UniProtKB/Swiss-Prot:P0CG54] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsKeNa_10g0015830 | OsKeNa_10g0015830.01 | Chr10 | 21461715 | 21463821 | - | NAM | ||
| CDS seq | atgcagatccccgtggacctgatcacgggggccacgttgacgctggaagtggagccgtcggacacggtggagagcgtgaaggcgaagatcaaggccatgtcggggatcactgaggacttcgggttggcctgcgactgcatccgcacgcacatggaggcgcagaaactgatccaagagcatcatcaaaccctaacgactcgacctgctgctacggatgagatgcagatcttcgtgagagtgctcggggggaagaaggcgacggcgctgaaggtgcagccgtcggacacggtgggaagcgtgaaggtgaagctgtactacaggaagaagaagaagaccatgccgtgcaagcaacggctggttttctccggtatggagcttgcggacgaccgcacgctggcctcctacggcatcgaggaggagtcgacgttgtacctttgcctggcgctagaggccaccgtgcgcccgatccgtgcgaatgtcttccgagcccacgcacgtatggcgctggcggctgattcagtccaccggtggcaacgacgacactag
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| Protein seq | MQIPVDLITGATLTLEVEPSDTVESVKAKIKAMSGITEDFGLACDCIRTHMEAQKLIQEHHQTLTTRPAATDEMQIFVRVLGGKKATALKVQPSDTVGSVKVKLYYRKKKKTMPCKQRLVFSGMELADDRTLASYGIEEESTLYLCLALEATVRPIRANVFRAHARMALAADSVHRWQRRH |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | 0.0 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_10g0491801 | SBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os10g34960 | RBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os10g0491801 | SBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_10g0015590 | RBH | 0.0 | 0.0 | 0.0 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_10g0015510 | RBH | 0.0 | 0.0 | 0.0 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_10G0308600 | RBH | 0.0177405 | 0.0122795 | 0 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_10g0015460 | RBH | 0.0 | 0.0 | 0.0 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_10G0331200 | RBH | 0 | 0 | 0 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_10g0015220 | RBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_10g0015120 | RBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_10g0015520 | RBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_10g0015230 | RBH | 0.0 | 0.0 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_10g0015750 | RBH | 0.0 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_10G015390 | RBH | 0.0 | 0.0 | 0.0 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_10g0015460 | RBH | 0.0 | 0.0 | 0.0 |
