Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| Os06g0673500 | OGI:06075000 | 14/16 | Nipponbare | IRGSP 1.0 | RAP-db | Chr06:27958671-27960089 | ||||||||
| Gene Symbol | S27a, Ubi1 | ||||||||||
| DNA seq | CCAGAATAAGCAGGATTGATTTTTCTGAAAAACAGGGACAAGTATCAAGAACAAGCAGGATGCTAACTAGAGTTGTTCTTAACATATATCGTGTCACGACGATGACTGAAACCCAAATGGGAACTTGAAACTAACACCATCACAAACTTCATTTGCGCAAAGCCACCGCCCACCAGGCGTAGCAAAACATCTGAACCTACCGGCCACACGGAGGCGGAGCACCAGGTGCAAGGTGGACTCCTTCTGAATGTTGTAATCAGCCAGTGTACGTCCATCCTCGAGCTGCTTGTCTGCAAAGATGAGGCGCTGCTGGTCCGGGGGAATTCCCTCCTTGTCCTGAATCTTCGCCTTCACATTGTCGATCTTGTCCGAGGACTCGACCGCAAGAGTGATGGTCTTTCCTGTCAAGGTCTTCACAAAGATCTGCATGCCTCCCCTGAGGCGAAGGACAAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAATCCGCGAGGGTGCGGCCATCCTCTAGTTGCTTGCCAGCAAAGATGAGACGTTGCTGGTCAGGTGGAATGCCCTCCTTGTCCTGAATCTTGGCCTTCACATTGTCAATTGTATCAGAGGACTCAACCTCGAGGGTGATGGTCTTGCCAGTGAGTGTCTTCACAAAGATCTGCATCTGTACATAAGAAGGCTTATGAGAAAATCAATCAAGACAGAAGCTGGAACACGGATGATCTATTTCTTGTTATAATCATGGAGTAAACAATGAAAAAACAACCAACACCAGATTCATATGAACTCCTAGATTAGAAGATTTCATGGTTTACGGAAGTAATGGGAGGACCATATACATATGAGCTCGTAGATTTCATGGTTTAAAGGAAGTAATGCAAGTTACCCAAAGATTATAGTATACAGGAGAGCTTCCAGGTAGATGTAATAGTGAATTAGGAAAATTTCTGAAGGGGTCAGATCATATATAACCTGATGAACCAGATGGATCAATGGGTACTGGAATGAATGATTTCACTTTGAAACGTACAGTATACCAACAAACCAGAGCATCCTTAGAGGAGTAATCTCCACATCGTAAAATCGAGTAGACTATATTAGCGGTCCATATTCATCATCTAAGCGAACCTGTTTCCATGATTTCATCAATCTACCAACAGTATTTTGAGAGAAATCCCCAAACATCCATACGTAGCAAACACTAGCAACTAAATCGAACTAGATGCACCCAGCGGAAACAAATTTAATTAGATGGGGATCATCGGAACAGATCTATCGCTAGTCATCTAACCGGAGCAAAATCGAACAGAAACCAAGGGTATAGGGTAATAGGGATCAAGCGGCTGATGCATACATACCTTGACGAAGATCGCGAGCGCCGAGCGGCCGCCTTGCTTCAGATCGCAACGATTTCTCGATTTATGTC
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| CDS seq | CATAAATCGAGAAATCGTTGCGATCTGAAGCAAGGCGGCCGCTCGGCGCTCGCGATCTTCGTCAAGATGCAGATCTTTGTGAAGACACTCACTGGCAAGACCATCACCCTCGAGGTTGAGTCCTCTGATACAATTGACAATGTGAAGGCCAAGATTCAGGACAAGGAGGGCATTCCACCTGACCAGCAACGTCTCATCTTTGCTGGCAAGCAACTAGAGGATGGCCGCACCCTCGCGGATTACAACATCCAGAAGGAGTCCACCCTCCACCTTGTCCTTCGCCTCAGGGGAGGCATGCAGATCTTTGTGAAGACCTTGACAGGAAAGACCATCACTCTTGCGGTCGAGTCCTCGGACAAGATCGACAATGTGAAGGCGAAGATTCAGGACAAGGAGGGAATTCCCCCGGACCAGCAGCGCCTCATCTTTGCAGACAAGCAGCTCGAGGATGGACGTACACTGGCTGATTACAACATTCAGAAGGAGTCCACCTTGCACCTGGTGCTCCGCCTCCGTGTGGCCGGTAGGTTCAGATGTTTTGCTACGCCTGGTGGGCGGTGGCTTTGCGCAAATGAAGTTTGTGATGGTGTTAGTTTCAAGTTCCCATTTGGGTTTCAGTCATCGTCGTGA
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| Protein seq | HKSRNRCDLKQGGRSALAIFVKMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLAVESSDKIDNVKAKIQDKEGIPPDQQRLIFADKQLEDGRTLADYNIQKESTLHLVLRLRVAGRFRCFATPGGRWLCANEVCDGVSFKFPFGFQSSS |
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| Function | Polyubiquitin (Fragment) [UniProtKB/Swiss-Prot:P0CG83] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| Os06g0673500 | Os06t0673500-01 | Chr06 | 27958671 | 27960089 | - | irgsp1_rep | ||
| CDS seq | CATAAATCGAGAAATCGTTGCGATCTGAAGCAAGGCGGCCGCTCGGCGCTCGCGATCTTCGTCAAGATGCAGATCTTTGTGAAGACACTCACTGGCAAGACCATCACCCTCGAGGTTGAGTCCTCTGATACAATTGACAATGTGAAGGCCAAGATTCAGGACAAGGAGGGCATTCCACCTGACCAGCAACGTCTCATCTTTGCTGGCAAGCAACTAGAGGATGGCCGCACCCTCGCGGATTACAACATCCAGAAGGAGTCCACCCTCCACCTTGTCCTTCGCCTCAGGGGAGGCATGCAGATCTTTGTGAAGACCTTGACAGGAAAGACCATCACTCTTGCGGTCGAGTCCTCGGACAAGATCGACAATGTGAAGGCGAAGATTCAGGACAAGGAGGGAATTCCCCCGGACCAGCAGCGCCTCATCTTTGCAGACAAGCAGCTCGAGGATGGACGTACACTGGCTGATTACAACATTCAGAAGGAGTCCACCTTGCACCTGGTGCTCCGCCTCCGTGTGGCCGGTAGGTTCAGATGTTTTGCTACGCCTGGTGGGCGGTGGCTTTGCGCAAATGAAGTTTGTGATGGTGTTAGTTTCAAGTTCCCATTTGGGTTTCAGTCATCGTCGTGA
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| Protein seq | HKSRNRCDLKQGGRSALAIFVKMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLAVESSDKIDNVKAKIQDKEGIPPDQQRLIFADKQLEDGRTLADYNIQKESTLHLVLRLRVAGRFRCFATPGGRWLCANEVCDGVSFKFPFGFQSSS
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | None | None | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_06g0681400 | RBH | 128.911606 | 119.807053 | 172.056442 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os06g46770 | SBH | 83.202942 | 76.968407 | 42.352703 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os02g0161900 | SBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_02g0004771 | SBH | 23.611549 | 747.267395 | 279.629150 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_06g0026321 | RBH | 19.307150 | 171.160156 | 135.050400 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_02g0004741 | SBH | 152.594208 | 376.591431 | 476.852570 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_06G0445500 | RBH | 301.8122715 | 233.660339 | 88.659298 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_06g0026001 | RBH | 8.491142 | 14.054948 | 25.362541 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_06G0427500 | SBH | 427.0364075 | 285.330887 | 263.5328065 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_06g0026451 | SBH | 17.024366 | 6.984823 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_02G004751 | SBH | 9.700830 | 34.566254 | 65.454994 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
