Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| Os09g0568400 | OGI:09066260 | 3/16 | Nipponbare | IRGSP 1.0 | RAP-db | Chr09:22693865-22694815 | ||||||||
| Gene Symbol | Ub-CEP52-2 | ||||||||||
| DNA seq | AGATGTGTGAACTCACCTTATGATCTAAAACTTTTGAGGCATAATTACTTTCTGACCTGCCAATCTAGTAACATTCAAAACATTTTTTCACTGTGTTTGGCTCTGATGCTTGGACTGGCATGCCTTGCCAGAAAGTTAGTGTCATTTGCTAATGTTATGCCAGTAGTACCATCATGTATTATAGGCACAGTAGTGCTGCATCTGTTTTCCTGATATTGCTCCCTTTTAGGGTAGACTGAGTTCAGCATGTGAATACATTTCGACTGTTTTCTTGCAGGTGCTATGCTCGGCTGCACCCCAGGGCTGTCAACTGCCGCAAGAAGAAGTGCGGCCACAGCAACCAGGTGATTATCATTGTTCTATACAAGCAAGTGATTTAGATTTGCTGTTTACTTGGCACCAATGTTCTTTAGTAATAGGAGCAACAGCTAAGGGCACCATTAGATTTTAGAATTTGTATTGACCCTTGCAATTTAGAGCGGTGCAAGTCTGCTGCTCTAATTATGTTTGAAGTAGTGTAGTGTGTTGAGCATATTAGGTTTACATCAGCCTTAGATTTGTGATTTTTTTTAATACTGTTGTGAGAAATTGCACTTGAAATGTCAACCAAGTTTAGTATAGCTTGTTGACAAGTATTCTATATCCTCGCCGAAATGCGTCTTATCTACTGTAGCATCTAACGTGCTTTCAAATTCCTACCCTTTCAGCTGAGGCCCAAGAAGAAGATCAAGAACTAGAGTTTGAGATATCATTTCCGCGGATCATTGAAATCAACAGGAAGATCAGAGTTTAAGTTTTTTTGTAGTGTAATGCCTCATGTTGTATGCCGAACTTTCTGTTTATCCTGTTGTATGTTAACCTTGGTTACGCTGGAGAGTACTCCAGCTTATTTTGATGACATAATTGACTACAAAGTCAAGGTTATATGGCCCGGCCTTAATTTTTGTCCCC
More
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| CDS seq | GTTCAGCATGTGAATACATTTCGACTGTTTTCTTGCAGGTGCTATGCTCGGCTGCACCCCAGGGCTGTCAACTGCCGCAAGAAGAAGTGCGGCCACAGCAACCAGCTGAGGCCCAAGAAGAAGATCAAGAACTAG |
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| Protein seq | VQHVNTFRLFSCRCYARLHPRAVNCRKKKCGHSNQLRPKKKIKN |
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| Function | Ubiquitin-60S ribosomal protein L40-2 [UniProtKB/Swiss-Prot:P0CH35] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| Os09g0568400 | Os09t0568400-01 | Chr09 | 22693865 | 22694814 | + | irgsp1_rep | ||
| CDS seq | GTTCAGCATGTGAATACATTTCGACTGTTTTCTTGCAGGTGCTATGCTCGGCTGCACCCCAGGGCTGTCAACTGCCGCAAGAAGAAGTGCGGCCACAGCAACCAGCTGAGGCCCAAGAAGAAGATCAAGAACTAG |
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| Protein seq | VQHVNTFRLFSCRCYARLHPRAVNCRKKKCGHSNQLRPKKKIKN |
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| Os09g0568400 | Os09t0568400-02 | Chr09 | 22694142 | 22694815 | + | irgsp1_rep | ||
| CDS seq | TGCTATGCTCGGCTGCACCCCAGGGCTGTCAACTGCCGCAAGAAGAAGTGCGGCCACAGCAACCAGCTGAGGCCCAAGAAGAAGATCAAGAACTAG |
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| Protein seq | CYARLHPRAVNCRKKKCGHSNQLRPKKKIKN |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | None | None | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_09g0452700 | SBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os09g39500 | SBH | 7.842901 | 6.270913 | 6.391160 |
| Nipponbare | IRGSP 1.0 | RAP-db | NA | NA | NA | NA | NA |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_09G0383900 | RBH | 59.5420265 | 50.3326055 | 31.6361915 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_09G0373400 | RBH | 57.248768 | 21.3651595 | 143.476364 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
