Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| LOC_Os09g39500 | OGI:09066260 | 3/16 | Nipponbare | IRGSP 1.0 | MSU | Chr09:22692667-22694885 | ||||||||
| Gene Symbol | Ub-CEP52-2 | ||||||||||
| DNA seq | CTCCTCCCTCGCCGGCATATAAGTAGCCGCAGCCGCCGCCTCCATTTCCCGACCTTGCTCCACACCCGCAGCAGCAGCAGCAGCAAGGAGAAGAAGAAGAGCCAAGATGCAGATCTTCGTGAAGACCCTAACGGGGAAGACCATCACGCTCGAGGTCGAGAGCAGCGACACCATCGACAATGTCAAGGCCAAGATCCAGGACAAGGAAGGTACGCTTGCTTAGCATTTAGCAATGCTTCTTCTTCTTCTTCTTGCTCGGTCTCTTTTGCCTGCTTGATTGCGAATCGATCTGCTCCGCGGGGCCTCAGGCATCCCTCCGGACCAGCAGCGCCTCATCTTCGCCGGCAAGCAGCTGGAGGATGGCCGCACCCTGGCCGACTACAACATCCAGAAGGAGTCCACGCTCCACCTCGTCCTCCGCCTCCGCGGTGGCATCATCGAGCCCTCCCTCCAGGCCCTCGCCCGCAAGTACAATCAGGACAAGATGATCTGCCGCAAGTACGCTCCTTCTAATTTCCTTCTCCTTGAATGCTCGACTTTTGATTATGCATACTCCTTTATATGTTCCTATAGTTTATTATGCTTATGATATGATGCTTGCCTTGTGAGGGTTGGATCTGTGGTTTGTAACTCTATGACGCGTGGCATTGGGTTCCCCATGGGTCCAGAGATTGACAACCCACCTATACTTTGTCTGCTGCCTAGCCTATTTCGGTAGTTGATTTTCACTGGTGGGACATGTTAAATCATTCGTTGTCATACCACATGGAACTGCGTAGAAGATTGGCAGGAATGATGAATCAATTAGATGTGCGAAGTCTCCTTGTGAGCTTAACTTTTGAGGCATACATTCTGTCTGACCTGCCAATCAGCTCATCTATGTTTCAAAGCAAGTTGCTTTTTTTTGTCATTTGTTTGTGAGCTTTACCATATGTTTTGGGAAGATAAAAACACTACTTTTCGACTTGAAATTTCAAGTGAGCTAACCTATCGAGGCACATTTTTCATTTTAACCATCTTCTAGGATGTATTATTTTATTCAATTAATATACCCTGTGTTATCTTATTGCTAGGTATGAGTGACTCACTGACTCTTAGTTTGTGAAGTTCTATCATCAAGTATTTTGTTGCTGTGTCCAGCAGTGCCATGTAGTATGTATGTGGAAATTAGCAGATTGGCTGGGATGATGAATCAATTAGATGTGTGAACTCACCTTATGATCTAAAACTTTTGAGGCATAATTACTTTCTGACCTGCCAATCTAGTAACATTCAAAACATTTTTTCACTGTGTTTGGCTCTGATGCTTGGACTGGCATGCCTTGCCAGAAAGTTAGTGTCATTTGCTAATGTTATGCCAGTAGTACCATCATGTATTATAGGCACAGTAGTGCTGCATCTGTTTTCCTGATATTGCTCCCTTTTAGGGTAGACTGAGTTCAGCATGTGAATACATTTCGACTGTTTTCTTGCAGGTGCTATGCTCGGCTGCACCCCAGGGCTGTCAACTGCCGCAAGAAGAAGTGCGGCCACAGCAACCAGGTGATTATCATTGTTCTATACAAGCAAGTGATTTAGATTTGCTGTTTACTTGGCACCAATGTTCTTTAGTAATAGGAGCAACAGCTAAGGGCACCATTAGATTTTAGAATTTGTATTGACCCTTGCAATTTAGAGCGGTGCAAGTCTGCTGCTCTAATTATGTTTGAAGTAGTGTAGTGTGTTGAGCATATTAGGTTTACATCAGCCTTAGATTTGTGATTTTTTTTAATACTGTTGTGAGAAATTGCACTTGAAATGTCAACCAAGTTTAGTATAGCTTGTTGACAAGTATTCTATATCCTCGCCGAAATGCGTCTTATCTACTGTAGCATCTAACGTGCTTTCAAATTCCTACCCTTTCAGCTGAGGCCCAAGAAGAAGATCAAGAACTAGAGTTTGAGATATCATTTCCGCGGATCATTGAAATCAACAGGAAGATCAGAGTTTAAGTTTTTTTGTAGTGTAATGCCTCATGTTGTATGCCGAACTTTCTGTTTATCCTGTTGTATGTTAACCTTGGTTACGCTGGAGAGTACTCCAGCTTATTTTGATGACATAATTGACTACAAAGTCAAGGTTATATGGCCCGGCCTTAATTTTTGTCCCCTTCGAAGTTTGCCCCTCATTGTTGTTTGTGGTTGCTACCATGCTGTGATCTGAATTCAAATTGTAAGTTT
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| CDS seq | ATGCAGATCTTCGTGAAGACCCTAACGGGGAAGACCATCACGCTCGAGGTCGAGAGCAGCGACACCATCGACAATGTCAAGGCCAAGATCCAGGACAAGGAAGGCATCCCTCCGGACCAGCAGCGCCTCATCTTCGCCGGCAAGCAGCTGGAGGATGGCCGCACCCTGGCCGACTACAACATCCAGAAGGAGTCCACGCTCCACCTCGTCCTCCGCCTCCGCGGTGGCATCATCGAGCCCTCCCTCCAGGCCCTCGCCCGCAAGTACAATCAGGACAAGATGATCTGCCGCAAGTGCTATGCTCGGCTGCACCCCAGGGCTGTCAACTGCCGCAAGAAGAAGTGCGGCCACAGCAACCAGCTGAGGCCCAAGAAGAAGATCAAGAACTAG |
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| Protein seq | MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGIIEPSLQALARKYNQDKMICRKCYARLHPRAVNCRKKKCGHSNQLRPKKKIKN |
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| Function | Ubiquitin-60S ribosomal protein L40-2 [UniProtKB/Swiss-Prot:P0CH35] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| LOC_Os09g39500 | LOC_Os09g39500.1 | Chr09 | 22692667 | 22694885 | + | MSU_osa1r7 | ||
| CDS seq | ATGCAGATCTTCGTGAAGACCCTAACGGGGAAGACCATCACGCTCGAGGTCGAGAGCAGCGACACCATCGACAATGTCAAGGCCAAGATCCAGGACAAGGAAGGCATCCCTCCGGACCAGCAGCGCCTCATCTTCGCCGGCAAGCAGCTGGAGGATGGCCGCACCCTGGCCGACTACAACATCCAGAAGGAGTCCACGCTCCACCTCGTCCTCCGCCTCCGCGGTGGCATCATCGAGCCCTCCCTCCAGGCCCTCGCCCGCAAGTACAATCAGGACAAGATGATCTGCCGCAAGTGCTATGCTCGGCTGCACCCCAGGGCTGTCAACTGCCGCAAGAAGAAGTGCGGCCACAGCAACCAGCTGAGGCCCAAGAAGAAGATCAAGAACTAG
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| Protein seq | MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGIIEPSLQALARKYNQDKMICRKCYARLHPRAVNCRKKKCGHSNQLRPKKKIKN |
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| LOC_Os09g39500 | LOC_Os09g39500.2 | Chr09 | 22693865 | 22694885 | + | MSU_osa1r7 | ||
| CDS seq | ATGCCTCATGTTGTATGCCGAACTTTCTGTTTATCCTGTTGTATGTTAACCTTGGTTACGCTGGAGAGTACTCCAGCTTATTTTGATGACATAATTGACTACAAAGTCAAGGTTATATGGCCCGGCCTTAATTTTTGTCCCCTTCGAAGTTTGCCCCTCATTGTTGTTTGTGGTTGCTACCATGCTGTGATCTGA |
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| Protein seq | MPHVVCRTFCLSCCMLTLVTLESTPAYFDDIIDYKVKVIWPGLNFCPLRSLPLIVVCGCYHAVI |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 7.842901 | 6.270913 | 6.391160 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_09g0452700 | SBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os02g06640 | SBH | 7.120409 | 33.603981 | 5.857125 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os09g0452700 | SBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_09g0009820 | SBH | 0.189925 | 15.252475 | 6.870955 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_09g0009770 | SBH | 0.000000 | 4.837818 | 3.919382 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_09g0014830 | SBH | 1.652618 | 5.987529 | 5.752805 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_09g0009780 | SBH | 0.226729 | 0.650856 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_09g0009940 | SBH | 4.248049 | 31.980186 | 23.003189 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_09G0383900 | RBH | 59.5420265 | 50.3326055 | 31.6361915 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_09g0009900 | SBH | 0.470691 | 1.711796 | 2.579843 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_09G0373400 | RBH | 57.248768 | 21.3651595 | 143.476364 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_09g0009900 | SBH | 0.285249 | 0.369912 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_09g0009680 | SBH | 0.780682 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_09g0009810 | SBH | 6.020234 | 32.396938 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_09g0014360 | SBH | 0.719010 | 0.0 | 1.064243 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_09g0009690 | SBH | 0.680269 | 7.204558 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_09G010160 | SBH | 0.408715 | 11.749269 | 4.134317 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_09g0009950 | SBH | 0.000000 | 23.764811 | 7.378790 |
