Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLima_09g0009900 | OGI:09042810 | 16/16 | LIMA | Os127564RS1 | Gramene(+IsoSeq) | Chr09:14946967-14950921 | ||||||||
| Gene Symbol | RAD23, OsRAD23, UBL40-1, UbL40-1, OsUbL40-1, UbL401, UBL40-4, UbL40-4, OsUbL40-4, UbL404, Ub-CEP52-2 | ||||||||||
| DNA seq | ccggtgcccgaaataaaaatcggagaaaaactcacgcccccattccctcccctctcccctctccgccctagagctcgacggcggcggcaacaagggctgggggatgaagatatccgtgaagacactcaagggatccaccttccagatcgaggtggactccgcgcagaaggtatgctctggtctccgcgctctcgatctgtcggtcgcgagcgccgatttcgtttctttctttttctttttcttttgtggggggcgatctaggaggtggtgaccggattggggttaggtttgtttctacggctacgcaaggctatagctgtggatccaatctgattgtgtgattcgtgttactatatgtgattgatttctttgatggttggataactggattggttattataggtagtagtagtagtaatagtagaacagattaagttaaccagattgagtcatagttgtttcattctacgtgctatttataactgatctaatttcttaaagcaggttgctgatgtgaaaaggataatcgagactactcaaggacagcacatttacccagctgagcaacagatgctcattcatcaggggaaggtgctcaaggatgacaccacattggatgaaaacaaagttcttgaaaacagcttccttgttataatgcttagacaggtgggtacagcacctgtttgatgttatatggctattacctggcgcaaaatcatgaatatcatacttatcgtacaataatccatggaatgtcaaggtattcaactgcatgatcactatgcattttaagcatttgttcagggtatctgcagctctcagaatgtagtgagctatgttatgtattggaattgctttaaaagatgtagggcttcatcttgactctatgctaatcactactagtctgcaacaaaagaacaacttgtcagtacttctgttactcctttctggctgctgcaaagacaatccataaacctaaattttgaattgctgcagctattttgtcaatcgtttatatcatacttattgtaagaaagttctttgttgttttcacgtttttcgacttttgaactttcacagggtaagggctcatcaagttcagctcctgctacatctaaggcaccctcaaatcaggtgagatggaatttgaattattgcattgatagtggttattcaggacaattgcccttcatgttcattaaatatctctgctgtacgacgctatggtcagtactcgactattggtttatcagttattactttatcaaacaggcaaaacatagccataagtgataactagcaaaatatctaggatttcagcctgaacatctggctctcctaatatagctgcaaatgatgagcacttctatcaatctatagttaacacagatttgttcttagtcaactatggctgagcttgaagggtagcttttacaagttcagagctactagatttaactccatgtatctttgtcatctgttattgtcttgtagaatcattacttcctcttgagttaatctgaatgaggaagagctctatatgctgtatcattttaccaccatgtgaaatgctatccttttgttttcttgagtgtttattttatagtgtttcctcatggtatgtttctctactgagattatagatatctaaccatttattatttgccaggctccccctactcaaacagtgcctgcagctcctgcatctcaagcaccagttgcaccagcaactacgtgagttaactcagatttttatttttgcttcctttttaactctttaacatagcagatgcaattattatttgaagatgtattgctttatcagtttagttgtggagtgtagctattgctttgttagtttaattcacatggtagtgcacaaatacagcttagtttggaaggcttattatgttcatcttatcttctgttaacttgtgctagaaatgagtcagaacttgtttagtgttttactcagtgtcctataattgatttttgctactttgcagctaaatacctgccagctaactcatctgtcttatgtttaattgaagtgtacctgtcactgtcagtgctcctaccccaactgccacagcttccccagctcctgctgttgctgtatcgtgagttcctgatgttccatccattctataaatttgattattctcatgtgaatgtagtttctgcttgaggatgtgctgtaatttactgaacccattttgacttgatcttttcttcttgccatttgagcagctctgaagctgataactacggtcaggccacctcaaaccttgttgctggcagcaatctagaggcaacaattcaatcaattcttgaaatgggtggtggaatatgggatagagacattgtgctgcatgctctaagcgctgcattcaacaacccggagagggctgttgaatatctgtactctgtaagaacattcttttcctccctatttaggtgctaggtcttgcttgacaatgattttctctgttcccgaatttgcctgtataactgtagctattgaacataccatgtcttgcttatagtagattgtatgaggctatataattgctaaatgatatacttgtttgttttatgggattgtttgtagttcgtttatcctttttaatttgtgctgtcttttgaatcgtatgtagtattctacagaaaatgcatgttgactcaaactttagattgcagatatttttggctgcaacactaatatccttgtctgctttaatgtagggtgttcctgagcagatggacattccagttccacctccgagtatacagccagccaatcctacccaggcttcacaggcaactcaaccagcagctccatcaattctttcgtctggaccaaacgctagtcccttggacctctttcctcaagtactctcttccgcacgagtgttttgttctctttcgcacgctagttgaattttgctctgattttttattttttaagcttttcaggcccttccaaatgcttccaccgatgctgctggtctaggaaatcttgatgctttgcgcaataatgcacaattccgaaccttgctttctttagtgcaagccaatcctcaaattttacaggtttttctcatactgctttccttaaaaataaaaaaaaaataaaaaacctcactgactggccaattcatttgcagccattgcttcaagaattggggaaacaaaatccccagattttgcagctgattcaggaaaaccaagctgagttcctccacttaatcaatgaaccagctgagggtgatgatgaagagtatgtcttaatctttgcttttatcataactcttttcttctgatgcgtttgctgtattaacaatctttccctttctgaaccaggaatttgctagaccagtttccagaggcaatgccacagaccatagcagttactccagaggagaatgaagccatacttcgtgtgagtcgaaaaatcccgaattcccctatgctctgcatagttgtcatcttgcttttagaatatttgctttacacataactagcataacatcctttctttcacatcctaagcttgaagcaatgggctttgaccgcgcgcttgttctggacgtgttcttcgcttgcaacaaggacgagcagctggcggcaaactatctcctagatcacatgaacgagttcgacgacgaggggccaccataagacgcggatggaatacttgtcaagctcaaacctggtatcattggagcaaagggtttgtgacccgtagtccgtagagcagaaggcttagtaaaacctttttattttattttatttttttgtggattcgtccccttctgttccttcttttctttcattagtctgtaattcttttcagtttggcttttactttcttgcgtacatactctagattacctttttttacagacttgataacggaggtataaaaaggttcagagcccgtctgcattcaacc
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| CDS seq | atgaagatatccgtgaagacactcaagggatccaccttccagatcgaggtggactccgcgcagaaggttgctgatgtgaaaaggataatcgagactactcaaggacagcacatttacccagctgagcaacagatgctcattcatcaggggaaggtgctcaaggatgacaccacattggatgaaaacaaagttcttgaaaacagcttccttgttataatgcttagacagggtaagggctcatcaagttcagctcctgctacatctaaggcaccctcaaatcaggctccccctactcaaacagtgcctgcagctcctgcatctcaagcaccagttgcaccagcaactactgtacctgtcactgtcagtgctcctaccccaactgccacagcttccccagctcctgctgttgctgtatcctctgaagctgataactacggtcaggccacctcaaaccttgttgctggcagcaatctagaggcaacaattcaatcaattcttgaaatgggtggtggaatatgggatagagacattgtgctgcatgctctaagcgctgcattcaacaacccggagagggctgttgaatatctgtactctggtgttcctgagcagatggacattccagttccacctccgagtatacagccagccaatcctacccaggcttcacaggcaactcaaccagcagctccatcaattctttcgtctggaccaaacgctagtcccttggacctctttcctcaagcccttccaaatgcttccaccgatgctgctggtctaggaaatcttgatgctttgcgcaataatgcacaattccgaaccttgctttctttagtgcaagccaatcctcaaattttacagccattgcttcaagaattggggaaacaaaatccccagattttgcagctgattcaggaaaaccaagctgagttcctccacttaatcaatgaaccagctgagggtgatgatgaagagaatttgctagaccagtttccagaggcaatgccacagaccatagcagttactccagaggagaatgaagccatacttcgtcttgaagcaatgggctttgaccgcgcgcttgttctggacgtgttcttcgcttgcaacaaggacgagcagctggcggcaaactatctcctagatcacatgaacgagttcgacgacgaggggccaccataa
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| Protein seq | MKISVKTLKGSTFQIEVDSAQKVADVKRIIETTQGQHIYPAEQQMLIHQGKVLKDDTTLDENKVLENSFLVIMLRQGKGSSSSAPATSKAPSNQAPPTQTVPAAPASQAPVAPATTVPVTVSAPTPTATASPAPAVAVSSEADNYGQATSNLVAGSNLEATIQSILEMGGGIWDRDIVLHALSAAFNNPERAVEYLYSGVPEQMDIPVPPPSIQPANPTQASQATQPAAPSILSSGPNASPLDLFPQALPNASTDAAGLGNLDALRNNAQFRTLLSLVQANPQILQPLLQELGKQNPQILQLIQENQAEFLHLINEPAEGDDEENLLDQFPEAMPQTIAVTPEENEAILRLEAMGFDRALVLDVFFACNKDEQLAANYLLDHMNEFDDEGPP |
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| Function | Probable ubiquitin receptor RAD23 [UniProtKB/Swiss-Prot:Q40742] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLima_09g0009900 | OsLima_09g0009900.01 | Chr09 | 14946967 | 14950921 | + | NAM | ||
| CDS seq | atgaagatatccgtgaagacactcaagggatccaccttccagatcgaggtggactccgcgcagaaggttgctgatgtgaaaaggataatcgagactactcaaggacagcacatttacccagctgagcaacagatgctcattcatcaggggaaggtgctcaaggatgacaccacattggatgaaaacaaagttcttgaaaacagcttccttgttataatgcttagacagggtaagggctcatcaagttcagctcctgctacatctaaggcaccctcaaatcaggctccccctactcaaacagtgcctgcagctcctgcatctcaagcaccagttgcaccagcaactactgtacctgtcactgtcagtgctcctaccccaactgccacagcttccccagctcctgctgttgctgtatcctctgaagctgataactacggtcaggccacctcaaaccttgttgctggcagcaatctagaggcaacaattcaatcaattcttgaaatgggtggtggaatatgggatagagacattgtgctgcatgctctaagcgctgcattcaacaacccggagagggctgttgaatatctgtactctggtgttcctgagcagatggacattccagttccacctccgagtatacagccagccaatcctacccaggcttcacaggcaactcaaccagcagctccatcaattctttcgtctggaccaaacgctagtcccttggacctctttcctcaagcccttccaaatgcttccaccgatgctgctggtctaggaaatcttgatgctttgcgcaataatgcacaattccgaaccttgctttctttagtgcaagccaatcctcaaattttacagccattgcttcaagaattggggaaacaaaatccccagattttgcagctgattcaggaaaaccaagctgagttcctccacttaatcaatgaaccagctgagggtgatgatgaagagaatttgctagaccagtttccagaggcaatgccacagaccatagcagttactccagaggagaatgaagccatacttcgtcttgaagcaatgggctttgaccgcgcgcttgttctggacgtgttcttcgcttgcaacaaggacgagcagctggcggcaaactatctcctagatcacatgaacgagttcgacgacgaggggccaccataa
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| Protein seq | MKISVKTLKGSTFQIEVDSAQKVADVKRIIETTQGQHIYPAEQQMLIHQGKVLKDDTTLDENKVLENSFLVIMLRQGKGSSSSAPATSKAPSNQAPPTQTVPAAPASQAPVAPATTVPVTVSAPTPTATASPAPAVAVSSEADNYGQATSNLVAGSNLEATIQSILEMGGGIWDRDIVLHALSAAFNNPERAVEYLYSGVPEQMDIPVPPPSIQPANPTQASQATQPAAPSILSSGPNASPLDLFPQALPNASTDAAGLGNLDALRNNAQFRTLLSLVQANPQILQPLLQELGKQNPQILQLIQENQAEFLHLINEPAEGDDEENLLDQFPEAMPQTIAVTPEENEAILRLEAMGFDRALVLDVFFACNKDEQLAANYLLDHMNEFDDEGPP
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.285249 | 0.369912 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_09g0407200 | RBH | 3.109571 | 2.464833 | 7.027431 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os09g24200 | RBH | 1.910816 | 1.227898 | 1.344047 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os09g0407200 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_09g0009820 | RBH | 0.189925 | 15.252475 | 6.870955 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_09g0009770 | RBH | 0.000000 | 4.837818 | 3.919382 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_09g0010040 | RBH | 1.902021 | 20.072477 | 15.573882 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_09g0009780 | RBH | 0.226729 | 0.650856 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_09g0009940 | RBH | 4.248049 | 31.980186 | 23.003189 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_09G0243100 | RBH | 5.730009 | 20.068568 | 9.654407 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_09g0009900 | RBH | 0.470691 | 1.711796 | 2.579843 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_09G0229000 | RBH | 6.0501295 | 22.3969615 | 13.4697715 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_08g0016140 | RBH | 0.685382 | 0.110396 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_09g0009680 | RBH | 0.780682 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_09g0009810 | RBH | 6.020234 | 32.396938 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_09g0009630 | RBH | 0.000000 | 0.0 | 0.000000 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_09g0009690 | RBH | 0.680269 | 7.204558 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_09G010160 | RBH | 0.408715 | 11.749269 | 4.134317 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_09g0009950 | RBH | 0.000000 | 23.764811 | 7.378790 |
