Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsMH63_05G0346900 | OGI:05061110 | 1/16 | Minghui 63 | MH63RS3 | HZAU | Chr05:23536530-23538581 | ||||||||
| Gene Symbol | UBL40-1, UbL40-1, OsUbL40-1, UbL401 | ||||||||||
| DNA seq | TCACATTGTAAACTTGGATATAAACTTTTTCTTCGGCATCAGCTGGGAAAAAAAAAAGAACGGATCAGATATAATAGAATGAAAGAATCATATCAGGCTATCAGCTGCCACACATCATCATATCAAAAATAATTATAACATATGCCCATAAATGATGTATAATCTGACGGTATATAATTAAACTTTATCTTTCTCTTTTTATATGTTAATTTTGAAAGCCTTAAGTTGCAACTAAAGCCAAGAACATGCATGGACATAAAGAAAAGGGGAATAGAACACTTTTGATGCATGAATTGAGATCGATGAGAAGAACTTATATATGGCTCTCTCTCACCTCATTGCTGTGGCCGCACTTCTTTTTGCGGCAGTTGGTAGCCCTGAGAGGAAGGCGTGCATAGCACCTGCATTACCAAACGCAAATTCAGGCCATGTTAATTTGAAACTTGAAAGTGCAAACGAACGCCAGTACGCCACACAATTGTATTAAGTATGCATCAATATTCGAGTCTGTATGGTGAAATCATCGGCAGATCGGTCAATTGAAGAAAGGCAATAATGGGAAACCGTGCGTACTTGCGGCAGATCATCTTCTTCTCGTTGTACTTGAGGGCTAGGTTCTGGAGTCTGGGCTCGATCATGGGGGGTAGCCGCCTCTGCCGCCGCCGCGGAGGCGGAGCACCAGGTGAAGCGTCGACTCCTTCTGGATGTTGTAGTCGGCCAGCGTGCGGCCGTCTTCCAGCTGCTTCCCCGCGAAGATGAGCCGCTGCTGATCCGGCGGGATCCCTGCAAAAATTTGAGTTCCAGACAGTGGGTTGAGATGATGATCAACTGAATTACCGAAAGAACACGATAAGAGGATCGAACGATGCTCCAATGCTCTACTGCTAGAGTTATACTTACTCCGTGATTAAAGTCAAACTGCTTCAAGTTTAACAAAGTTTATAGAAAAAATATAGTAATATTTACATTGCTAAATTAGTTTTATTAGATTAATAATTAAATATATTTTCATAATAAGTTTATTTTAGGTTGAAATATTACTATTTTTTCTATAAAATTGGTTAAATTTAAAGTCGTTTGATTTTAACCAAAGTCAAAACATCTTATAATCTGAAACGGAGGAAGTTCTATGTAACTATGTATATATTGTGGAAGGCCCTACGCGTCGGGCGCCGGATGCTTTGGGGAAAAATCGGGCGCTGACGTCATGCTAACGTCAGCGTCCGATTTACGTGTAAAAACTACTTTAAACTGATTTTTCTCTTAAATTACTTATCCAAATCATGATCCGATTGTACCATTAAATTCGTTGCAATTAAATTTTCAAAACAAGACCACACATGGATATATTCCGACGAATTTTTTTAGCCTATTATTGAATTATTTTTAAATGTTGCACGATGTTCCACCGGGTATATCGGAATTGTTTCACTAAGTAAATCGAAAATGTTTCACTTGTTTAAATCGGGTGTTGTTTCACCTTATATAAAAACAATGTTTCAGTTCACTGCAACATTTGATCTATACATAGTGAGGCATTGTAAGTACACTAGGTGAAACATTTTTCGGTGGAACAAAAAAATAAAACGAATTCCCTTAATAGGGGATTTCCAAAATATGTGGGGTTTTTTTTGCAATGGAGTATTTCAGTTCACTGCAACATTAGATTTATACATAGTGAAACATTGTGGGTACACTAAGTGAAACATTTTTTGTGGAACAAAAAATAAACCGAATTCCCTTAATAGGAGGTTTCCAAAATATGTGATTTTTTTGTTACAATAGAGTATATGGTGAAGATATATGGCAAATAGTAGGGACACATGGTGGGGTCCCAGTAGAAGCACATGGACACGTTGTGGAGGGGGGGAGAGGAGAAGCGCCCGATTTTCTCCCCTCCCCCGGGTGACCGAGCGGTAGCATTTTCGATATATTGTATGTTAGTTTACCTTCCTTGTCTTGGATCTTGGCCTTGACGTTGTCTATGGTGTCGCTGCTCTCGACCTCCAGGGTGATCGACTTCCCCGTCAGCGTCTTCACGAAGATCTGCAT
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| CDS seq | ATGCAGATCTTCGTGAAGACGCTGACGGGGAAGTCGATCACCCTGGAGGTCGAGAGCAGCGACACCATAGACAACGTCAAGGCCAAGATCCAAGACAAGGAAGGGATCCCGCCGGATCAGCAGCGGCTCATCTTCGCGGGGAAGCAGCTGGAAGACGGCCGCACGCTGGCCGACTACAACATCCAGAAGGAGTCGACGCTTCACCTGGTGCTCCGCCTCCGCGGCGGCGGCAGAGGCGCCCTCAAGTACAACGAGAAGAAGATGATCTGCCGCAAGTGCTATGCACGCCTTCCTCTCAGGGCTACCAACTGCCGCAAAAAGAAGTGCGGCCACAGCAATGAGCTGATGCCGAAGAAAAAGTTTATATCCAAGTTTACAATGTGA |
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| Protein seq | MQIFVKTLTGKSITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGGRGALKYNEKKMICRKCYARLPLRATNCRKKKCGHSNELMPKKKFISKFTM |
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| Function | Ubiquitin-60S ribosomal protein L40-2 [UniProtKB/Swiss-Prot:P0CH35] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsMH63_05G0346900 | OsMH63_05T0346900.1 | Chr05 | 23536530 | 23538581 | - | maker | ||
| CDS seq | ATGCAGATCTTCGTGAAGACGCTGACGGGGAAGTCGATCACCCTGGAGGTCGAGAGCAGCGACACCATAGACAACGTCAAGGCCAAGATCCAAGACAAGGAAGGGATCCCGCCGGATCAGCAGCGGCTCATCTTCGCGGGGAAGCAGCTGGAAGACGGCCGCACGCTGGCCGACTACAACATCCAGAAGGAGTCGACGCTTCACCTGGTGCTCCGCCTCCGCGGCGGCGGCAGAGGCGCCCTCAAGTACAACGAGAAGAAGATGATCTGCCGCAAGTGCTATGCACGCCTTCCTCTCAGGGCTACCAACTGCCGCAAAAAGAAGTGCGGCCACAGCAATGAGCTGATGCCGAAGAAAAAGTTTATATCCAAGTTTACAATGTGA
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| Protein seq | MQIFVKTLTGKSITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGGRGALKYNEKKMICRKCYARLPLRATNCRKKKCGHSNELMPKKKFISKFTM |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0 | 0 | 0.090729 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_06g0673500 | SBH | 0.0 | 0.690691 | 0.525994 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os05g42424 | SBH | 5.507017 | 5.206296 | 8.310571 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os06g0673500 | SBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_05g0029010 | SBH | 0.0 | 0.0 | 5.214191 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_05g0028800 | SBH | 0.0 | 0.0 | 10.639738 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_05g0028800 | SBH | 0.0 | 0.0 | 18.733360 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_05g0028860 | SBH | 0.0 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_05g0028730 | SBH | 0.0 | 0.0 | 17.060280 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_06G0445500 | SBH | 301.8122715 | 233.660339 | 88.659298 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_05g0028440 | SBH | 0.0 | 0.0 | 4.924353 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_05G0357400 | SBH | 0 | 0 | 0.0790205 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_05g0028610 | SBH | 0.040161 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_05g0028520 | SBH | 0.000000 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_05g0028760 | SBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_05g0028740 | SBH | 0.0 | 0.0 | 1.529603 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_05g0028790 | SBH | 0.0 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_05G028310 | SBH | 0.0 | 0.0 | 3.507805 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_05g0028810 | SBH | 0.0 | 0.0 | 20.561218 |
