Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| LOC_Os05g42424 | OGI:05067510 | 1/16 | Nipponbare | IRGSP 1.0 | MSU | Chr05:24862409-24865027 | ||||||||
| Gene Symbol | UBL40-1, UbL40-1, OsUbL40-1, UbL401 | ||||||||||
| DNA seq | CCCCACGCACACCCCGCTGCTTCCGATCAAATCGATCCCCAAATTCCCCGATCCCCGCAGCCGCTCCTGCGACTCGTAGGTCTCGTCAAGTCGGCGGCGACGACTTTGATCTCTATTCAAGGTATGTATATACGGTGCCGCCGCCTCCTCCTGTTCTGGTTTTGATCTGTATATAGGCGATTGATTGGTTTGGTGGTTGGGAAGGTGAAATCGATCTCGGGCTAGATCTGATCGATTGTGTAGCTGGATGGTTGATCGGATCGTTTGTTTTGGTCCTGGATGCTCGATCGGATAGTTCCGTGGTAATTTTTGTGTAGATCTGTTTGTTAAATCATGATTTATTTGGCTTGCCCGGTTGTCCCGTGCAAATCGTGCGCTAATTTTACCTGTGAGTATAAGTTGTGGCTCTGTGTGTATTTGTTCCTGATGCTCGTGTGGTCTTGATAAAAGCTTGGGCATATCTGCTGATCCATGATGTACTCTTAATTTTTGCCCTAGCAAACTTGATGCTGTTCGTGTATTCATTGAATTCCTGATGCTCGTGTCCTGTGGCCTCCGTAACCTTTCACTTGTCTGCTGATCCATTATGTACTGACTTAAGCCCTACAGCCCTAGCATACTTGATACTTTTATAGGTGCGCATTGTTTGAGTTCACAAGATTCAATTTAGTCAAGTTGCAGTAACATGATTGGAATTAGAATTCTTCATGATCCTGTGAAGCACCCAATCTAGCTTTGTCAGATTTGCATGTGGCACTTCCCTGAGTTAGATCAAAGATATGCTCTGCTGTATATCTTTTTTATGCTTTGTAATCTAATATAGAGAAGTACAGAACAACCATTGCTACGTTTGACATTAACTACAACCTTCTGTTATCTGTTAATTTTTTGTAGTTTGGTGCTTAGAAGAATCTTTTTTTTTGTTAACATTTGTTTGCTTGATCCTGGTTCCCTTATAATCTTGTATATACTGGAGACTTACCATGGTTGATATACATTCTTGCAGATGCAGATCTTTGTGAAGACTCTCACTGGCAAGACCATAACCCTTGAGGTTGAGTCCTCGGATACCATTGACAATGTAAAGGCCAAGATCCAGGACAAGGAGGGAATCCCACCGGACCAGCAGCGTCTCATCTTCGCTGGCAAGCAGCTTGAAGATGGGCGCACGCTTGCTGACTACAACATCCAGAAGGAATCCACCCTCCACCTTGTCCTCCGCCTCCGGGGAGGCATGCAAATCTTTGTCAAGACCTTGACTGGCAAGACTATCACCCTTGAGGTTGAGTCTTCTGATACTATTGACAACGTTAAGGCAAAGATCCAGGACAAGGAAGGGATTCCCCCGGACCAGCAGCGTCTGATCTTTGCTGGCAAGCAGCTCGAGGATGGTAGGACCCTTGCTGACTACAACATCCAGAAGGAGTCCACCCTTCACCTTGTTCTCCGCCTAAGGGGAGGAATGCAGATCTTCGTGAAGACCCTTACTGGCAAGACCATTACGCTTGAGGTTGAGTCATCAGACACGATCGACAACGTGAAGGCGAAGATCCAGGACAAGGAGGGCATTCCCCCAGATCAGCAGCGTCTTATTTTTGCCGGCAAGCAGCTGGAGGATGGCAGGACCCTCGCTGACTACAACATCCAGAAGGAGTCCACCCTTCACCTTGTTCTGCGCCTAAGGGGTGGAATGCAGATTTTCGTCAAGACTCTCACTGGCAAGACTATTACCCTGGAGGTTGAGAGCTCAGACACCATTGACAACGTGAAGGCGAAGATCCAGGATAAGGAGGGCATCCCCCCGGACCAGCAGAGACTCATCTTCGCTGGTAAGCAGCTGGAGGATGGCCGCACCCTTGCCGACTACAACATTCAGAAGGAGTCTACCCTACACTTGGTGCTCCGCCTCAGGGGTGGTATGCAGATCTTCGTCAAGACTCTTACTGGCAAGACCATTACTCTGGAGGTTGAGAGCTCCGATACCATCGACAATGTGAAGGCTAAGATCCAGGACAAGGAAGGTATTCCCCCAGACCAGCAGCGCCTGATCTTCGCCGGCAAGCAGCTGGAAGATGGCCGTACCCTCGCCGACTACAACATTCAGAAGGAGTCTACCCTCCACCTGGTGCTCCGCCTCAGGGGTGGTCAGTAATCATTGATTGATGGAATTGCTGCTGTACTGTTATCCTGTGTCTGCATTATCCTCGTGAAAACTTTATTTGTGCTGTTAGTGGACCATCGAGTCCGTTTAAATGTGCTGTACTGCTGTCCGAACATTTGCTGGGTCATAGCAGTTTAAACTAATTAATAAGTAAACTATTAATCTGCGTTGCTAAATTTGCTTATAGTTCTGCACCCATTACAACTCTTCATTCAAATTTGCCTACATTTCAGATTAAAGTGCCTGCGTGCTGCTACATCTATTTCTTGATTTATTTTATTGACTAGTAGATCAGAGTGATATAAGTCCTATTGGGTACACTGGAGTGAAACAATGGCAGATTCTTATCATGCTAATCACCAAATGGATCGTTTGGACTTTGTAGCCCTCAAATTATTAGGGCGTTTTCTGGATGATATCATGAGGGTGTTTTCTGGGGGATGGTGCTGCAAAGCAAA
More
|
||||||||||
| CDS seq | ATGCAGATCTTTGTGAAGACTCTCACTGGCAAGACCATAACCCTTGAGGTTGAGTCCTCGGATACCATTGACAATGTAAAGGCCAAGATCCAGGACAAGGAGGGAATCCCACCGGACCAGCAGCGTCTCATCTTCGCTGGCAAGCAGCTTGAAGATGGGCGCACGCTTGCTGACTACAACATCCAGAAGGAATCCACCCTCCACCTTGTCCTCCGCCTCCGGGGAGGCATGCAAATCTTTGTCAAGACCTTGACTGGCAAGACTATCACCCTTGAGGTTGAGTCTTCTGATACTATTGACAACGTTAAGGCAAAGATCCAGGACAAGGAAGGGATTCCCCCGGACCAGCAGCGTCTGATCTTTGCTGGCAAGCAGCTCGAGGATGGTAGGACCCTTGCTGACTACAACATCCAGAAGGAGTCCACCCTTCACCTTGTTCTCCGCCTAAGGGGAGGAATGCAGATCTTCGTGAAGACCCTTACTGGCAAGACCATTACGCTTGAGGTTGAGTCATCAGACACGATCGACAACGTGAAGGCGAAGATCCAGGACAAGGAGGGCATTCCCCCAGATCAGCAGCGTCTTATTTTTGCCGGCAAGCAGCTGGAGGATGGCAGGACCCTCGCTGACTACAACATCCAGAAGGAGTCCACCCTTCACCTTGTTCTGCGCCTAAGGGGTGGAATGCAGATTTTCGTCAAGACTCTCACTGGCAAGACTATTACCCTGGAGGTTGAGAGCTCAGACACCATTGACAACGTGAAGGCGAAGATCCAGGATAAGGAGGGCATCCCCCCGGACCAGCAGAGACTCATCTTCGCTGGTAAGCAGCTGGAGGATGGCCGCACCCTTGCCGACTACAACATTCAGAAGGAGTCTACCCTACACTTGGTGCTCCGCCTCAGGGGTGGTATGCAGATCTTCGTCAAGACTCTTACTGGCAAGACCATTACTCTGGAGGTTGAGAGCTCCGATACCATCGACAATGTGAAGGCTAAGATCCAGGACAAGGAAGGTATTCCCCCAGACCAGCAGCGCCTGATCTTCGCCGGCAAGCAGCTGGAAGATGGCCGTACCCTCGCCGACTACAACATTCAGAAGGAGTCTACCCTCCACCTGGTGCTCCGCCTCAGGGGTGGTCAGTAA
More
|
||||||||||
| Protein seq | MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGQ |
||||||||||
| Function | Polyubiquitin 4 [UniProtKB/Swiss-Prot:P0CH32] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| LOC_Os05g42424 | LOC_Os05g42424.1 | Chr05 | 24862409 | 24865027 | + | MSU_osa1r7 | ||
| CDS seq | ATGCAGATCTTTGTGAAGACTCTCACTGGCAAGACCATAACCCTTGAGGTTGAGTCCTCGGATACCATTGACAATGTAAAGGCCAAGATCCAGGACAAGGAGGGAATCCCACCGGACCAGCAGCGTCTCATCTTCGCTGGCAAGCAGCTTGAAGATGGGCGCACGCTTGCTGACTACAACATCCAGAAGGAATCCACCCTCCACCTTGTCCTCCGCCTCCGGGGAGGCATGCAAATCTTTGTCAAGACCTTGACTGGCAAGACTATCACCCTTGAGGTTGAGTCTTCTGATACTATTGACAACGTTAAGGCAAAGATCCAGGACAAGGAAGGGATTCCCCCGGACCAGCAGCGTCTGATCTTTGCTGGCAAGCAGCTCGAGGATGGTAGGACCCTTGCTGACTACAACATCCAGAAGGAGTCCACCCTTCACCTTGTTCTCCGCCTAAGGGGAGGAATGCAGATCTTCGTGAAGACCCTTACTGGCAAGACCATTACGCTTGAGGTTGAGTCATCAGACACGATCGACAACGTGAAGGCGAAGATCCAGGACAAGGAGGGCATTCCCCCAGATCAGCAGCGTCTTATTTTTGCCGGCAAGCAGCTGGAGGATGGCAGGACCCTCGCTGACTACAACATCCAGAAGGAGTCCACCCTTCACCTTGTTCTGCGCCTAAGGGGTGGAATGCAGATTTTCGTCAAGACTCTCACTGGCAAGACTATTACCCTGGAGGTTGAGAGCTCAGACACCATTGACAACGTGAAGGCGAAGATCCAGGATAAGGAGGGCATCCCCCCGGACCAGCAGAGACTCATCTTCGCTGGTAAGCAGCTGGAGGATGGCCGCACCCTTGCCGACTACAACATTCAGAAGGAGTCTACCCTACACTTGGTGCTCCGCCTCAGGGGTGGTATGCAGATCTTCGTCAAGACTCTTACTGGCAAGACCATTACTCTGGAGGTTGAGAGCTCCGATACCATCGACAATGTGAAGGCTAAGATCCAGGACAAGGAAGGTATTCCCCCAGACCAGCAGCGCCTGATCTTCGCCGGCAAGCAGCTGGAAGATGGCCGTACCCTCGCCGACTACAACATTCAGAAGGAGTCTACCCTCCACCTGGTGCTCCGCCTCAGGGGTGGTCAGTAA
More
|
|||||||
| Protein seq | MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGQ
More
|
|||||||
| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 5.507017 | 5.206296 | 8.310571 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_06g0673500 | SBH | 0.0 | 0.690691 | 0.525994 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os07g30640 | RBH | 0.0 | 0.0 | 2.784428 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os09g0452700 | SBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_05g0029010 | SBH | 0.0 | 0.0 | 5.214191 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_05g0028800 | SBH | 0.0 | 0.0 | 10.639738 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_05g0028800 | SBH | 0.0 | 0.0 | 18.733360 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_05g0028860 | SBH | 0.0 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_05g0028730 | SBH | 0.0 | 0.0 | 17.060280 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_05G0346900 | SBH | 0 | 0 | 0.090729 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_05g0028440 | SBH | 0.0 | 0.0 | 4.924353 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_05G0357400 | SBH | 0 | 0 | 0.0790205 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_05g0028610 | SBH | 0.040161 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_05g0028520 | SBH | 0.000000 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_05g0028760 | SBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_05g0028740 | SBH | 0.0 | 0.0 | 1.529603 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_05g0028790 | SBH | 0.0 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_05G028310 | SBH | 0.0 | 0.0 | 3.507805 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_05g0028810 | SBH | 0.0 | 0.0 | 20.561218 |
