Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsGoSa_05g0028760 | OGI:05079670 | 16/16 | GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | Chr05:30215317-30217437 | ||||||||
| Gene Symbol | S27a, UBL40-1, UbL40-1, OsUbL40-1, UbL401, - | ||||||||||
| DNA seq | atgacgacgacggccgccggccgagccaccctgtgcgcggcgagggaggagcaggagctcctggccacccgcctgaatgtgaacggcatccggccgccgcattgcgccgcggaatccatcctcatctacctcaccgcgccggggctctccatgatgcccatgcgggtgatggcctccgactccatcgcctccgtcaagctccgcgtccagacctccaagggcttcgtcgtccgcaagcagaagctcgtcttcgatggccgggagctcgcccggaacgacagccgcatcatggactacggcgtctcccacggcaacgtcctccacctcgtcatccgcatctccgacctccgcctcatcaccgtccagaccgtccacggcaacaagttcaggttccgcgtcgagcccggccgcaccgtcggctacgtcaagcagcagatcgccaagaactccacccacgacgacgaccaccacagcctcgtcctccagggcgaggtgctcgacgacgcccacctcatccacgacgtctgcaggaccgacggcgccgtcatccacctgctcgtccaccgctccgccaagctcgccgccaggcccgtcgaccgggacttcgaggtctccatcgtcgcgcgcaaccgcaacgccgccgccgacgctgctcaaccgacgttgcacctgcagagggacttcgccatcgagccggtcatcgtcaaccccaaggccgcgcttccgccagtgatcgagaacctggtgggcgccgtgctggccgggatggagaaggggaacgccccgatcatgtcgtcggagggcaccgggggggcgtatttcatgcaggacgcgtcggggcaggagcacgtcgccgtgttcaagccggtggacgaggagcccatggcggccaacaacccacgcggcctcccaccctcgcccaccggcgaggggctcaagaaggggacacgcgtcggcgagggcgccatcagagaggtcgccgcctacatcctcgaccaccctcccggtggccgccgttcgttcgcaggacatcatggctccgccaccgtgggcttcgccggtgtcgcgccaaccgcgctggtccgttgcatgcacaggagcttcaagcaacctgcagcttccgaacaaggtcctccattgttcaaggtggggtcattgcaggcgttcgtgaagaacagcggcagctgcgaggacatgggacctcgtgcgttcccggtgcacgaagttcacaagatctgcgtgctggacatcaggctggccaacgccgacaggcacgccggcaacatcctcacctgcagagacgaacaaggccatggcctcaccctggttccgatcgaccatggatactgtcttcctgagagtgtaagcactgacaaaacacgccggccaatgatttagctaatgatcctgattccattttgtgatgatgcatgcacatcgatcagtttgaggattgcacattcgagtggctctactggccgcagtgtcgggagccattcagcgaggagacggtggagtacataaggtcactggacgcggaggaggacgtcgccattctgaggttccatgggtgggagatgccagccaagtgcgagcgcgtcctgcgcgtcaccaccatgctgctcaagaagggcgtcgactcgggcctcgccgcgttcgacatggggagcatcttgtgcagggagacgctcaccaaggagtctgtcatcgaggagatcatccgtgaggttgaagacgatgttggtgatgaagctgccttcctgcagtctgtctctcaatccatggatcgccgtctgggtgaattatccaagAaaaaaaaaagtaatgtaagtatacaagattaactggttgccctccctctactcatatcatagataaataacgtcaataaaaagggccaagctaaactaattaaaagggacagaggaaaaggttgtactagtgtacttgagttataaactttttgtgcggctgacaattgagtgtacatgtaatcagcagtggatttaaaggccttgagggcgtgtacccttttttttctttcatgtggtttaattatgtggaaaatttgactacatgcatcacctattttccacaaacatcatgatcaaacttaatata
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| CDS seq | atgacgacgacggccgccggccgagccaccctgtgcgcggcgagggaggagcaggagctcctggccacccgcctgaatgtgaacggcatccggccgccgcattgcgccgcggaatccatcctcatctacctcaccgcgccggggctctccatgatgcccatgcgggtgatggcctccgactccatcgcctccgtcaagctccgcgtccagacctccaagggcttcgtcgtccgcaagcagaagctcgtcttcgatggccgggagctcgcccggaacgacagccgcatcatggactacggcgtctcccacggcaacgtcctccacctcgtcatccgcatctccgacctccgcctcatcaccgtccagaccgtccacggcaacaagttcaggttccgcgtcgagcccggccgcaccgtcggctacgtcaagcagcagatcgccaagaactccacccacgacgacgaccaccacagcctcgtcctccagggcgaggtgctcgacgacgcccacctcatccacgacgtctgcaggaccgacggcgccgtcatccacctgctcgtccaccgctccgccaagctcgccgccaggcccgtcgaccgggacttcgaggtctccatcgtcgcgcgcaaccgcaacgccgccgccgacgctgctcaaccgacgttgcacctgcagagggacttcgccatcgagccggtcatcgtcaaccccaaggccgcgcttccgccagtgatcgagaacctggtgggcgccgtgctggccgggatggagaaggggaacgccccgatcatgtcgtcggagggcaccgggggggcgtatttcatgcaggacgcgtcggggcaggagcacgtcgccgtgttcaagccggtggacgaggagcccatggcggccaacaacccacgcggcctcccaccctcgcccaccggcgaggggctcaagaaggggacacgcgtcggcgagggcgccatcagagaggtcgccgcctacatcctcgaccaccctcccggtggccgccgttcgttcgcaggacatcatggctccgccaccgtgggcttcgccggtgtcgcgccaaccgcgctggtccgttgcatgcacaggagcttcaagcaacctgcagcttccgaacaaggtcctccattgttcaaggtggggtcattgcaggcgttcgtgaagaacagcggcagctgcgaggacatgggacctcgtgcgttcccggtgcacgaagttcacaagatctgcgtgctggacatcaggctggccaacgccgacaggcacgccggcaacatcctcacctgcagagacgaacaaggccatggcctcaccctggttccgatcgaccatggatactgtcttcctgagagttttgaggattgcacattcgagtggctctactggccgcagtgtcgggagccattcagcgaggagacggtggagtacataaggtcactggacgcggaggaggacgtcgccattctgaggttccatgggtgggagatgccagccaagtgcgagcgcgtcctgcgcgtcaccaccatgctgctcaagaagggcgtcgactcgggcctcgccgcgttcgacatggggagcatcttgtgcagggagacgctcaccaaggagtctgtcatcgaggagatcatccgtgaggttgaagacgatgttggtgatgaagctgccttcctgcagtctgtctctcaatccatggatcgccgtctgggtgaattatccaagAaaaaaaaaagtaatgtaagtatacaagattaa
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| Protein seq | MTTTAAGRATLCAAREEQELLATRLNVNGIRPPHCAAESILIYLTAPGLSMMPMRVMASDSIASVKLRVQTSKGFVVRKQKLVFDGRELARNDSRIMDYGVSHGNVLHLVIRISDLRLITVQTVHGNKFRFRVEPGRTVGYVKQQIAKNSTHDDDHHSLVLQGEVLDDAHLIHDVCRTDGAVIHLLVHRSAKLAARPVDRDFEVSIVARNRNAAADAAQPTLHLQRDFAIEPVIVNPKAALPPVIENLVGAVLAGMEKGNAPIMSSEGTGGAYFMQDASGQEHVAVFKPVDEEPMAANNPRGLPPSPTGEGLKKGTRVGEGAIREVAAYILDHPPGGRRSFAGHHGSATVGFAGVAPTALVRCMHRSFKQPAASEQGPPLFKVGSLQAFVKNSGSCEDMGPRAFPVHEVHKICVLDIRLANADRHAGNILTCRDEQGHGLTLVPIDHGYCLPESFEDCTFEWLYWPQCREPFSEETVEYIRSLDAEEDVAILRFHGWEMPAKCERVLRVTTMLLKKGVDSGLAAFDMGSILCRETLTKESVIEEIIREVEDDVGDEAAFLQSVSQSMDRRLGELSKKKKSNVSIQD |
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| Function | Phosphatidylinositol 4-kinase gamma 4 [UniProtKB/Swiss-Prot:Q9ZPY9] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsGoSa_05g0028760 | OsGoSa_05g0028760.01 | Chr05 | 30215317 | 30217437 | + | NAM | ||
| CDS seq | atgacgacgacggccgccggccgagccaccctgtgcgcggcgagggaggagcaggagctcctggccacccgcctgaatgtgaacggcatccggccgccgcattgcgccgcggaatccatcctcatctacctcaccgcgccggggctctccatgatgcccatgcgggtgatggcctccgactccatcgcctccgtcaagctccgcgtccagacctccaagggcttcgtcgtccgcaagcagaagctcgtcttcgatggccgggagctcgcccggaacgacagccgcatcatggactacggcgtctcccacggcaacgtcctccacctcgtcatccgcatctccgacctccgcctcatcaccgtccagaccgtccacggcaacaagttcaggttccgcgtcgagcccggccgcaccgtcggctacgtcaagcagcagatcgccaagaactccacccacgacgacgaccaccacagcctcgtcctccagggcgaggtgctcgacgacgcccacctcatccacgacgtctgcaggaccgacggcgccgtcatccacctgctcgtccaccgctccgccaagctcgccgccaggcccgtcgaccgggacttcgaggtctccatcgtcgcgcgcaaccgcaacgccgccgccgacgctgctcaaccgacgttgcacctgcagagggacttcgccatcgagccggtcatcgtcaaccccaaggccgcgcttccgccagtgatcgagaacctggtgggcgccgtgctggccgggatggagaaggggaacgccccgatcatgtcgtcggagggcaccgggggggcgtatttcatgcaggacgcgtcggggcaggagcacgtcgccgtgttcaagccggtggacgaggagcccatggcggccaacaacccacgcggcctcccaccctcgcccaccggcgaggggctcaagaaggggacacgcgtcggcgagggcgccatcagagaggtcgccgcctacatcctcgaccaccctcccggtggccgccgttcgttcgcaggacatcatggctccgccaccgtgggcttcgccggtgtcgcgccaaccgcgctggtccgttgcatgcacaggagcttcaagcaacctgcagcttccgaacaaggtcctccattgttcaaggtggggtcattgcaggcgttcgtgaagaacagcggcagctgcgaggacatgggacctcgtgcgttcccggtgcacgaagttcacaagatctgcgtgctggacatcaggctggccaacgccgacaggcacgccggcaacatcctcacctgcagagacgaacaaggccatggcctcaccctggttccgatcgaccatggatactgtcttcctgagagttttgaggattgcacattcgagtggctctactggccgcagtgtcgggagccattcagcgaggagacggtggagtacataaggtcactggacgcggaggaggacgtcgccattctgaggttccatgggtgggagatgccagccaagtgcgagcgcgtcctgcgcgtcaccaccatgctgctcaagaagggcgtcgactcgggcctcgccgcgttcgacatggggagcatcttgtgcagggagacgctcaccaaggagtctgtcatcgaggagatcatccgtgaggttgaagacgatgttggtgatgaagctgccttcctgcagtctgtctctcaatccatggatcgccgtctgggtgaattatccaagAaaaaaaaaagtaatgtaagtatacaagattaa
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| Protein seq | MTTTAAGRATLCAAREEQELLATRLNVNGIRPPHCAAESILIYLTAPGLSMMPMRVMASDSIASVKLRVQTSKGFVVRKQKLVFDGRELARNDSRIMDYGVSHGNVLHLVIRISDLRLITVQTVHGNKFRFRVEPGRTVGYVKQQIAKNSTHDDDHHSLVLQGEVLDDAHLIHDVCRTDGAVIHLLVHRSAKLAARPVDRDFEVSIVARNRNAAADAAQPTLHLQRDFAIEPVIVNPKAALPPVIENLVGAVLAGMEKGNAPIMSSEGTGGAYFMQDASGQEHVAVFKPVDEEPMAANNPRGLPPSPTGEGLKKGTRVGEGAIREVAAYILDHPPGGRRSFAGHHGSATVGFAGVAPTALVRCMHRSFKQPAASEQGPPLFKVGSLQAFVKNSGSCEDMGPRAFPVHEVHKICVLDIRLANADRHAGNILTCRDEQGHGLTLVPIDHGYCLPESFEDCTFEWLYWPQCREPFSEETVEYIRSLDAEEDVAILRFHGWEMPAKCERVLRVTTMLLKKGVDSGLAAFDMGSILCRETLTKESVIEEIIREVEDDVGDEAAFLQSVSQSMDRRLGELSKKKKSNVSIQD
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_05g0590100 | RBH | 0.0 | 0.108404 | 6.264117 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os05g51230 | RBH | 0.0 | 0.070789 | 1.575232 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os05g0590100 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_05g0029010 | RBH | 0.0 | 0.0 | 5.214191 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_05g0028800 | RBH | 0.0 | 0.0 | 10.639738 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_05g0028800 | RBH | 0.0 | 0.0 | 18.733360 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_05g0028860 | RBH | 0.0 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_05g0028730 | RBH | 0.0 | 0.0 | 17.060280 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_05G0460000 | RBH | 0.077246 | 0 | 0 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_05g0028440 | RBH | 0.0 | 0.0 | 4.924353 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_05G0473300 | RBH | 0.1556475 | 0 | 0.0922965 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_05g0028610 | RBH | 0.040161 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_05g0028520 | RBH | 0.000000 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_01g0041550 | RBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_05g0028740 | RBH | 0.0 | 0.0 | 1.529603 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_05g0028790 | RBH | 0.0 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_05G028310 | RBH | 0.0 | 0.0 | 3.507805 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_05g0028810 | RBH | 0.0 | 0.0 | 20.561218 |
