Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsMH63_01G0231600 | OGI:01042190 | 6/16 | Minghui 63 | MH63RS3 | HZAU | Chr01:14263123-14264874 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | TAGCAGCCCACCATATCACGATCAACCAGCAGTGGTCCTTCAATGAAAATGGTTAGCAACCCACCATATCACGATCAACCCGGCCCCTCTCCACCCCCCACCTCTTACAACACCAAAAAGAATCCCCTGAGCTCGAGCGAACGCTCTGCACTTAGCCTCCATCTGAATTCCCAAGACCTCGATCAGGATTCCGGATCAATCTCAAAATAAGGCTGGTGAAGGTATGTAATATGTTCTTCTCTTTGTTATGCACGCCGCTGCCAAGCTAACTAGCTAGCTAAACTATTTGCTGAGTAATATGTTTGTCTGCATGGTGAATATTAGCTTTTGGGTGTATTTCGTGTTGATTTCTTCTATGTTTATGTGCCAGGCGTCCGTCTTGCTTAATATGGTTGCAACCACGTCCCCGTATTCACCGCTTCTGCAAATCATACCAGCCGCCGGCTGCTTTCTGAATTTACTAGCGGCCGATAAGGAGTACAGGGACCGTCCCGACATCGTCAAAATAATTCCATTCGTTATCTTGCTTCTGCACATTCTCTCCTATGTCGGTTTTGTTCTGGTCCAGAACCACAAGTATTCCAACATCAGGGTGTACATCGACACCGCCATCGTGGTGGTGGCATCTTACTTGTCCCTACTCATGGTGAACGCGGGGTACATCGTGCTCGCGATCTTCCCATTCATCGCGCTCGGCTTCATCGTCGTGTTGTGCAGAGCTCTGGTCGGCCGTGGCAATGGCGCCGCCGATGCTGACCAAGCAGGCAGTAGTACAGGTACCGGCGGCGAGGCCATAAATATTGACATAGGCAAGAAGGCAATGCGAGAAGCCGAGCAGCTGAAGGCTATTTCCATAGGGCCCTACTTGCTGCTTGGAGTGATGGGGCGATTAAGTCCGGAGAACTTGGCTGTCTCCCGGTTCCTCCTCTTCCTAAGCACCACCCTAGGTACGCTGATGCTGATGATGATTAGGCTGCCCGCCGGCGTGGTCGCGCCCGGTGTCAAACAGGCGTCCGATCTGCTCCGTAAGACCTCGCTCGTGGTGCTGCTTGTCACCGTGCACACGATGGCAGCAGAGTTGCTTGGCGAGAACGTCGTGTTGTTCCTCATGCCGGAGCTTGTCCCCGCGCTCCTCTGGTTCAGCCTTAACATCGACCGTGGCAGCCCGGTTATCACGGTGGACACGATCAAATCGTGCAAAAATGGACTCATCTTCCTCGGCACACCAGCGGCGATCTGTCTCGTCGCGTACTTGGCAAAATCCATGGATGAGTCTGGAGTCTCCGGGTGTGTGATGACTTCGGTGTCATGTGGAGTTTCAGGCCTTCTAGTGTACTATGTTGTGTTCATGCTGCGTCAGTGGCCAGCGGCACAGAGCACGGCCACGGGCACCAGTGGTGTCTATTCTTTGGGGGAGTTTTGGGCAATCTTTCTGCTGGTAGCAGCCGCTGCGTTACTGCTATCAGCATCGGTGGCTGCTGTCCGGCTAGGTCTGCATGAACAAGCGGTTCCTGCTCTGCTCAAATTTCTGAAAGAATACTACGTCTAATGCTGACACATATCGGTTGTTAATTGTTTTCTTATTAGAAATTGAAATTATTATTACTATAGTTGATTTAGCTTTGTGTTGTAAACTTGTGTTGTAGCTTTTCATAGATAACGGAATTTTTTTACATCAGTGACGGTAACTTGTGATGTGCTCAAACTTGTGACGATTTACCATTTTACAGAGTGACGGAACATATTAATTCC
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| CDS seq | ATGGTTGCAACCACGTCCCCGTATTCACCGCTTCTGCAAATCATACCAGCCGCCGGCTGCTTTCTGAATTTACTAGCGGCCGATAAGGAGTACAGGGACCGTCCCGACATCGTCAAAATAATTCCATTCGTTATCTTGCTTCTGCACATTCTCTCCTATGTCGGTTTTGTTCTGGTCCAGAACCACAAGTATTCCAACATCAGGGTGTACATCGACACCGCCATCGTGGTGGTGGCATCTTACTTGTCCCTACTCATGGTGAACGCGGGGTACATCGTGCTCGCGATCTTCCCATTCATCGCGCTCGGCTTCATCGTCGTGTTGTGCAGAGCTCTGGTCGGCCGTGGCAATGGCGCCGCCGATGCTGACCAAGCAGGCAGTAGTACAGGTACCGGCGGCGAGGCCATAAATATTGACATAGGCAAGAAGGCAATGCGAGAAGCCGAGCAGCTGAAGGCTATTTCCATAGGGCCCTACTTGCTGCTTGGAGTGATGGGGCGATTAAGTCCGGAGAACTTGGCTGTCTCCCGGTTCCTCCTCTTCCTAAGCACCACCCTAGGTACGCTGATGCTGATGATGATTAGGCTGCCCGCCGGCGTGGTCGCGCCCGGTGTCAAACAGGCGTCCGATCTGCTCCGTAAGACCTCGCTCGTGGTGCTGCTTGTCACCGTGCACACGATGGCAGCAGAGTTGCTTGGCGAGAACGTCGTGTTGTTCCTCATGCCGGAGCTTGTCCCCGCGCTCCTCTGGTTCAGCCTTAACATCGACCGTGGCAGCCCGGTTATCACGGTGGACACGATCAAATCGTGCAAAAATGGACTCATCTTCCTCGGCACACCAGCGGCGATCTGTCTCGTCGCGTACTTGGCAAAATCCATGGATGAGTCTGGAGTCTCCGGGTGTGTGATGACTTCGGTGTCATGTGGAGTTTCAGGCCTTCTAGTGTACTATGTTGTGTTCATGCTGCGTCAGTGGCCAGCGGCACAGAGCACGGCCACGGGCACCAGTGGTGTCTATTCTTTGGGGGAGTTTTGGGCAATCTTTCTGCTGGTAGCAGCCGCTGCGTTACTGCTATCAGCATCGGTGGCTGCTGTCCGGCTAGGTCTGCATGAACAAGCGGTTCCTGCTCTGCTCAAATTTCTGAAAGAATACTACGTCTAA
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| Protein seq | MVATTSPYSPLLQIIPAAGCFLNLLAADKEYRDRPDIVKIIPFVILLLHILSYVGFVLVQNHKYSNIRVYIDTAIVVVASYLSLLMVNAGYIVLAIFPFIALGFIVVLCRALVGRGNGAADADQAGSSTGTGGEAINIDIGKKAMREAEQLKAISIGPYLLLGVMGRLSPENLAVSRFLLFLSTTLGTLMLMMIRLPAGVVAPGVKQASDLLRKTSLVVLLVTVHTMAAELLGENVVLFLMPELVPALLWFSLNIDRGSPVITVDTIKSCKNGLIFLGTPAAICLVAYLAKSMDESGVSGCVMTSVSCGVSGLLVYYVVFMLRQWPAAQSTATGTSGVYSLGEFWAIFLLVAAAALLLSASVAAVRLGLHEQAVPALLKFLKEYYV |
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| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsMH63_01G0231600 | OsMH63_01T0231600.1 | Chr01 | 14263123 | 14264874 | + | maker | ||
| CDS seq | ATGGTTGCAACCACGTCCCCGTATTCACCGCTTCTGCAAATCATACCAGCCGCCGGCTGCTTTCTGAATTTACTAGCGGCCGATAAGGAGTACAGGGACCGTCCCGACATCGTCAAAATAATTCCATTCGTTATCTTGCTTCTGCACATTCTCTCCTATGTCGGTTTTGTTCTGGTCCAGAACCACAAGTATTCCAACATCAGGGTGTACATCGACACCGCCATCGTGGTGGTGGCATCTTACTTGTCCCTACTCATGGTGAACGCGGGGTACATCGTGCTCGCGATCTTCCCATTCATCGCGCTCGGCTTCATCGTCGTGTTGTGCAGAGCTCTGGTCGGCCGTGGCAATGGCGCCGCCGATGCTGACCAAGCAGGCAGTAGTACAGGTACCGGCGGCGAGGCCATAAATATTGACATAGGCAAGAAGGCAATGCGAGAAGCCGAGCAGCTGAAGGCTATTTCCATAGGGCCCTACTTGCTGCTTGGAGTGATGGGGCGATTAAGTCCGGAGAACTTGGCTGTCTCCCGGTTCCTCCTCTTCCTAAGCACCACCCTAGGTACGCTGATGCTGATGATGATTAGGCTGCCCGCCGGCGTGGTCGCGCCCGGTGTCAAACAGGCGTCCGATCTGCTCCGTAAGACCTCGCTCGTGGTGCTGCTTGTCACCGTGCACACGATGGCAGCAGAGTTGCTTGGCGAGAACGTCGTGTTGTTCCTCATGCCGGAGCTTGTCCCCGCGCTCCTCTGGTTCAGCCTTAACATCGACCGTGGCAGCCCGGTTATCACGGTGGACACGATCAAATCGTGCAAAAATGGACTCATCTTCCTCGGCACACCAGCGGCGATCTGTCTCGTCGCGTACTTGGCAAAATCCATGGATGAGTCTGGAGTCTCCGGGTGTGTGATGACTTCGGTGTCATGTGGAGTTTCAGGCCTTCTAGTGTACTATGTTGTGTTCATGCTGCGTCAGTGGCCAGCGGCACAGAGCACGGCCACGGGCACCAGTGGTGTCTATTCTTTGGGGGAGTTTTGGGCAATCTTTCTGCTGGTAGCAGCCGCTGCGTTACTGCTATCAGCATCGGTGGCTGCTGTCCGGCTAGGTCTGCATGAACAAGCGGTTCCTGCTCTGCTCAAATTTCTGAAAGAATACTACGTCTAA
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| Protein seq | MVATTSPYSPLLQIIPAAGCFLNLLAADKEYRDRPDIVKIIPFVILLLHILSYVGFVLVQNHKYSNIRVYIDTAIVVVASYLSLLMVNAGYIVLAIFPFIALGFIVVLCRALVGRGNGAADADQAGSSTGTGGEAINIDIGKKAMREAEQLKAISIGPYLLLGVMGRLSPENLAVSRFLLFLSTTLGTLMLMMIRLPAGVVAPGVKQASDLLRKTSLVVLLVTVHTMAAELLGENVVLFLMPELVPALLWFSLNIDRGSPVITVDTIKSCKNGLIFLGTPAAICLVAYLAKSMDESGVSGCVMTSVSCGVSGLLVYYVVFMLRQWPAAQSTATGTSGVYSLGEFWAIFLLVAAAALLLSASVAAVRLGLHEQAVPALLKFLKEYYV
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 7.908259 | 11.408142 | 0.0090835 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_01g0343400 | SBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os01g24430 | SBH | 0.037960 | 0.381483 | 0.0 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os01g0343400 | SBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_01g0016060 | SBH | 0.137664 | 1.901550 | 0.459572 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_01g0015620 | SBH | 0.0 | 0.0 | 0.0 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_01g0015860 | SBH | 0.0 | 0.0 | 0.000000 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_01g0015320 | SBH | 0.0 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_01g0015480 | SBH | 0.0 | 0.0 | 0.0 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_01G0231300 | RBH | 0.056822 | 0.1099575 | 0.0099865 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_01g0015480 | RBH | 0.397777 | 0.0 | 0.169642 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_01G0226800 | RBH | 0.1286275 | 0.127195 | 0 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_01g0015390 | RBH | 0.028803 | 0.046254 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_01g0015360 | RBH | 1.802931 | 11.800835 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_01g0015570 | RBH | 12.598705 | 6.374400 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_01g0015470 | SBH | 0.605144 | 0.081447 | 0.738291 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_01g0015270 | SBH | 0.156796 | 1.373509 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_01G015740 | SBH | 0.154889 | 0.0 | 0.936880 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_01g0015510 | SBH | 0.0 | 3.245520 | 1.677222 |
