Basic Info

Gene ID OGI # | Score   Accession | Assembly | Annotation Location Links
OsIR64_01g0015480 OGI:01042190 | 6/16 IR 64 | OsIR64RS1 | Gramene(+IsoSeq) Chr01:13899568-13901169
Gene Symbol -
DNA seq

CCCTCTCCACCCCCCACCTCTTACAACACCAAAAAGAATCCCCTGAGCTCGAGCGAACGCTCTGCACTTACCCTCCATCTGAATTCCCAAGACCTCGATCAGGATTGAGGATCAATCTCAAAATAAGGCTGGTGAAGGTATGTAATATGTTCTTCTCTTTGTTATGCACGCCGCTGCCAAGCTAACTAGCTAGCTAAACTATTTGCTGAGTAATATGTTTGTCTGCATAGTGAATATTAGCTTTTGGGTGTATTTCGTGTTGATTTCTTCTACGTTTATTTGCCAGGCGTCCGTCTTGCTTAATATGGTTGCAACCACGTCCCCGTATTCACCGCTTCTGCAAATCATACCAGCCGCCGGCTGCTTTCTGAATTTACTAGCGGCCGATAAGGAGTACAGGGACCGTCCCGACATCGTCAAAATAATTCCATTCGTTATCTTGCTTCTGCACATTCTCTCCTATGTCGGTTTTGTTCTTGTCCAGAACCACAAGTATTCCAACATCAGGGTGTACATCGACACCGCCATCGTGGTGGTGGCATCTTACTTGTCCCTACTCATGGTGAACGCGGGGTACATCGTGCTCGCGATCTTCCCATTCATCGCGCTCGGCTTCATCGTCGTGTTGTGCAGAGCTCTGGTCGGCCGTGGCAATGGCGCCGCCGATGCTGACCAAGCAGGCAGTAGTACAGGTACCGGCGGCGAGGCCATAAATATTGACATAGGCAAGAAGGCAATGCGAGAAGCCGAGCAGCTGAAGGCTATTTCCATAGGGCCCTACTTGCTGCTTGGCGTGATGGGGCGATTAAGTCCGGAGAACTTGGCTGTCTCCCGGTTCCTCCTCTTCCTAAGCACCACCCTAGGTACGCTGATGCTGATGATGATTAGGCTGCCCGCCGGCGTGGTCGCGCCCGGTGTCAAACAGGCGTCCGATCTGCTCCGTAAGACCTCGCTCGTGGTGCTGCTTGTCACCGTGCACACGATGGCAGCAGAGTTGCTTGGCGAGAACGTCGTGTTGTTCCTCATGCCGGAGCTTGTCCCCGCGCTCCTCTGGTTCAGCCTTAACATCGACCGTGGCAGCCCGGTTATCACGGTGGACACGATCAAATCGTGCAAAAATGGACTCATCTTCCTCGGCACACCAGCGGCGATCTGTCTCGTCGCGTACTTGGCAAAATCCATGGATGAGTCTGGAGTCTCCGGGTGTGTGATGACTTCGGTGTCATGTGGAGTTTCAGGCCTTCTAGTGTACTATGTTGTGTTCATGCTGCGTCAGTGGCCAGCGGCACAGAGCACGGCCACGGGCACCAGTGGTGTCTATTCTTTGGGGGAGTTTTGGGCAATCTTTCTGCTGGTAGCAGCCGCTGCGTTACTGCTATCAGCATCGGTGGCTGCTGTCCGGCTAGGTCTGCATGAACAAGCGGTTCCTGCTCTGCTCAAATTTCTGAAAGAATACTACGTCTAATGCTGACACATATCGGTTGTTAATTGTTTTCTTATTAGAAATTGAAATTATTATTACTATAGTTGATTTAGCTTTGTGTTGTAAACTTGTGTTGTAGCTTTTCATAGATAACGGAATTTTTTTACATCAGTGACGGT

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CDS seq

ATGGTTGCAACCACGTCCCCGTATTCACCGCTTCTGCAAATCATACCAGCCGCCGGCTGCTTTCTGAATTTACTAGCGGCCGATAAGGAGTACAGGGACCGTCCCGACATCGTCAAAATAATTCCATTCGTTATCTTGCTTCTGCACATTCTCTCCTATGTCGGTTTTGTTCTTGTCCAGAACCACAAGTATTCCAACATCAGGGTGTACATCGACACCGCCATCGTGGTGGTGGCATCTTACTTGTCCCTACTCATGGTGAACGCGGGGTACATCGTGCTCGCGATCTTCCCATTCATCGCGCTCGGCTTCATCGTCGTGTTGTGCAGAGCTCTGGTCGGCCGTGGCAATGGCGCCGCCGATGCTGACCAAGCAGGCAGTAGTACAGGTACCGGCGGCGAGGCCATAAATATTGACATAGGCAAGAAGGCAATGCGAGAAGCCGAGCAGCTGAAGGCTATTTCCATAGGGCCCTACTTGCTGCTTGGCGTGATGGGGCGATTAAGTCCGGAGAACTTGGCTGTCTCCCGGTTCCTCCTCTTCCTAAGCACCACCCTAGGTACGCTGATGCTGATGATGATTAGGCTGCCCGCCGGCGTGGTCGCGCCCGGTGTCAAACAGGCGTCCGATCTGCTCCGTAAGACCTCGCTCGTGGTGCTGCTTGTCACCGTGCACACGATGGCAGCAGAGTTGCTTGGCGAGAACGTCGTGTTGTTCCTCATGCCGGAGCTTGTCCCCGCGCTCCTCTGGTTCAGCCTTAACATCGACCGTGGCAGCCCGGTTATCACGGTGGACACGATCAAATCGTGCAAAAATGGACTCATCTTCCTCGGCACACCAGCGGCGATCTGTCTCGTCGCGTACTTGGCAAAATCCATGGATGAGTCTGGAGTCTCCGGGTGTGTGATGACTTCGGTGTCATGTGGAGTTTCAGGCCTTCTAGTGTACTATGTTGTGTTCATGCTGCGTCAGTGGCCAGCGGCACAGAGCACGGCCACGGGCACCAGTGGTGTCTATTCTTTGGGGGAGTTTTGGGCAATCTTTCTGCTGGTAGCAGCCGCTGCGTTACTGCTATCAGCATCGGTGGCTGCTGTCCGGCTAGGTCTGCATGAACAAGCGGTTCCTGCTCTGCTCAAATTTCTGAAAGAATACTACGTCTAA

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Protein seq

MVATTSPYSPLLQIIPAAGCFLNLLAADKEYRDRPDIVKIIPFVILLLHILSYVGFVLVQNHKYSNIRVYIDTAIVVVASYLSLLMVNAGYIVLAIFPFIALGFIVVLCRALVGRGNGAADADQAGSSTGTGGEAINIDIGKKAMREAEQLKAISIGPYLLLGVMGRLSPENLAVSRFLLFLSTTLGTLMLMMIRLPAGVVAPGVKQASDLLRKTSLVVLLVTVHTMAAELLGENVVLFLMPELVPALLWFSLNIDRGSPVITVDTIKSCKNGLIFLGTPAAICLVAYLAKSMDESGVSGCVMTSVSCGVSGLLVYYVVFMLRQWPAAQSTATGTSGVYSLGEFWAIFLLVAAAALLLSASVAAVRLGLHEQAVPALLKFLKEYYV

Function -

Transcripts

Gene Transcript Chromosome Start End Strand Source
OsIR64_01g0015480 OsIR64_01g0015480.01 Chr01 13899568 13901169 + NAM
CDS seq

ATGGTTGCAACCACGTCCCCGTATTCACCGCTTCTGCAAATCATACCAGCCGCCGGCTGCTTTCTGAATTTACTAGCGGCCGATAAGGAGTACAGGGACCGTCCCGACATCGTCAAAATAATTCCATTCGTTATCTTGCTTCTGCACATTCTCTCCTATGTCGGTTTTGTTCTTGTCCAGAACCACAAGTATTCCAACATCAGGGTGTACATCGACACCGCCATCGTGGTGGTGGCATCTTACTTGTCCCTACTCATGGTGAACGCGGGGTACATCGTGCTCGCGATCTTCCCATTCATCGCGCTCGGCTTCATCGTCGTGTTGTGCAGAGCTCTGGTCGGCCGTGGCAATGGCGCCGCCGATGCTGACCAAGCAGGCAGTAGTACAGGTACCGGCGGCGAGGCCATAAATATTGACATAGGCAAGAAGGCAATGCGAGAAGCCGAGCAGCTGAAGGCTATTTCCATAGGGCCCTACTTGCTGCTTGGCGTGATGGGGCGATTAAGTCCGGAGAACTTGGCTGTCTCCCGGTTCCTCCTCTTCCTAAGCACCACCCTAGGTACGCTGATGCTGATGATGATTAGGCTGCCCGCCGGCGTGGTCGCGCCCGGTGTCAAACAGGCGTCCGATCTGCTCCGTAAGACCTCGCTCGTGGTGCTGCTTGTCACCGTGCACACGATGGCAGCAGAGTTGCTTGGCGAGAACGTCGTGTTGTTCCTCATGCCGGAGCTTGTCCCCGCGCTCCTCTGGTTCAGCCTTAACATCGACCGTGGCAGCCCGGTTATCACGGTGGACACGATCAAATCGTGCAAAAATGGACTCATCTTCCTCGGCACACCAGCGGCGATCTGTCTCGTCGCGTACTTGGCAAAATCCATGGATGAGTCTGGAGTCTCCGGGTGTGTGATGACTTCGGTGTCATGTGGAGTTTCAGGCCTTCTAGTGTACTATGTTGTGTTCATGCTGCGTCAGTGGCCAGCGGCACAGAGCACGGCCACGGGCACCAGTGGTGTCTATTCTTTGGGGGAGTTTTGGGCAATCTTTCTGCTGGTAGCAGCCGCTGCGTTACTGCTATCAGCATCGGTGGCTGCTGTCCGGCTAGGTCTGCATGAACAAGCGGTTCCTGCTCTGCTCAAATTTCTGAAAGAATACTACGTCTAA

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Protein seq

MVATTSPYSPLLQIIPAAGCFLNLLAADKEYRDRPDIVKIIPFVILLLHILSYVGFVLVQNHKYSNIRVYIDTAIVVVASYLSLLMVNAGYIVLAIFPFIALGFIVVLCRALVGRGNGAADADQAGSSTGTGGEAINIDIGKKAMREAEQLKAISIGPYLLLGVMGRLSPENLAVSRFLLFLSTTLGTLMLMMIRLPAGVVAPGVKQASDLLRKTSLVVLLVTVHTMAAELLGENVVLFLMPELVPALLWFSLNIDRGSPVITVDTIKSCKNGLIFLGTPAAICLVAYLAKSMDESGVSGCVMTSVSCGVSGLLVYYVVFMLRQWPAAQSTATGTSGVYSLGEFWAIFLLVAAAALLLSASVAAVRLGLHEQAVPALLKFLKEYYV

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Event Type Chromosome Start End Strand Alternative mRNAs Total mRNAs Source

Expression

Leaf Root Panicle
FPKM 0.397777 0.0 0.169642

Homologues

Genome & Annotation Homologs Type Expression(FPKM)
Leaf Root Panicle
Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) OsNip_01g0343400 SBH 0.0 0.0 0.0
Nipponbare | IRGSP 1.0 | MSU LOC_Os01g24430 SBH 0.037960 0.381483 0.0
Nipponbare | IRGSP 1.0 | RAP-db Os01g0343400 SBH None None None
Azucena | AzucenaRS1 | Gramene(+IsoSeq) OsAzu_01g0016060 SBH 0.137664 1.901550 0.459572
KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) OsKeNa_01g0015620 SBH 0.0 0.0 0.0
CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) OsCMeo_01g0015860 SBH 0.0 0.0 0.000000
ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) OsARC_01g0015320 SBH 0.0 0.0 None
PR 106 | Os127742RS1 | Gramene(+IsoSeq) OsPr106_01g0015480 SBH 0.0 0.0 0.0
Minghui 63 | MH63RS3 | HZAU OsMH63_01G0231600 RBH 7.908259 11.408142 0.0090835
IR 64 | OsIR64RS1 | Gramene(+IsoSeq) OsIR64_01g0015460 RBH 0.082485 0.0 0.0
Zhenshan 97 | ZS97RS3 | HZAU OsZS97_01G0226800 RBH 0.1286275 0.127195 0
LIMA | Os127564RS1 | Gramene(+IsoSeq) OsLima_01g0015390 RBH 0.028803 0.046254 None
KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) OsKYG_01g0015360 RBH 1.802931 11.800835 None
GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) OsGoSa_01g0015570 RBH 12.598705 6.374400 None
LIU XU | Os125827RS1 | Gramene(+IsoSeq) OsLiXu_01g0015320 RBH 0.0 0.0 0.0
LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) OsLaMu_01g0015070 SBH 0.228918 0.0 None
N22 | OsN22RS2 | Gramene(+IsoSeq) OsN22_01G015740 SBH 0.154889 0.0 0.936880
NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) OsNaBo_01g0015510 SBH 0.0 3.245520 1.677222
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National Key Laboratory of Crop Genetic Improvement

Huazhong Agricultural University

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