Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| LOC_Os01g24430 | OGI:01040890 | 16/16 | Nipponbare | IRGSP 1.0 | MSU | Chr01:13775186-13776654 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | GCGAACTATCAATGATTTGGTAAAGTAAGGCCTACTGATAGTCTGATATCGATGCATATAAACCGTATCATCTCTGATGTACCTATACATAGTCAGATCCAATTAATACTGTCGAAATTTTCAGAAAATTTCAGGTAAAGATCAGGAGAGGAGAAATTCGCCATGGAGTTAGAGCTGGTGTATCTGTATCCGGTGACCTTGGTGCCGGCAGTCGTCGGCCGGTTCAGCATCCTTGCCTCGCCGTTGCTGAAGGAATTCGAGGAACACAACCTGCAATTCACCAGCATAATCCCGCTCTTCTTCTTCTACTCCTACATCAGCAAGTTCCTCTCCGACCTGCAGGGTCAGCCACTGCCTCTAGTCAAGCTCTATGCCCGGGCGCTGCACCGGTTTACCAGCTGCAGCAGCAGCAAAAGCCGTGCTAGCTTGAGGATCTACATGGACACTGCCGTCGTCGTGGTGCTGTCCTACCTGTCTCTGCTCAAGATCAACCTGAGCTACATCTGGCTCGCCGTCTTCCCCACCCTCACGCTCGCCTTCATCGCCGCTCTGTTCAACGAGGAGCTCCGCGGTGACAGGAGAGCCGCCGTTGCTGAGGAAGACGATGCAGGAGGAGGAAAGATCACTCGCTCGAGCTCAAGGCGATGGTGGTTGTGCCCTACTGGGTGCTATGCGCGATGGGGCAGTTTCATGGAGGTGACAGCTTTGCGGTGTCCCAGTTTCTTCTCTTCCTCGGCTCCACGCTGGGGGCGCTGGCGCTAATGGCGGCGCGGCTGTCGCAGCTCGCCGGAGCAGCACCGGGCTTAGCGCCGGCGTCGGAACTTCTCCGCAGGGCCACGCTCGTGGTGATGCTGGTGACGGCGCACGCTGCGGCCGCCGAGCTGCTGGGCGAGGCCACGATAGCGCTGCTCTGCCTGCCGGAGCTCGCGCCGGCGCTCTTCTGGTTCACCCTTCACCTCGACGGTGAAAGCTCGCCGGCCGCCACCATCGACGGCATCAAATCGCACAGGAATGTGCTGTCCGTTCTCGCTGCCGCAGCCGTCGCCAGTGTTGCGTACCTCGCGGCCGCCATGGGTGAGCGTGGCCTGTCCGTGAGCACCATCACGATGGTGTCTTGCGGCGTCTCAGGGCTTCTGGTCCGCTGCGCTGTGGTCGTGCTCGGTCAGTGGCCGGGGCAAGCTGAGACGGCCGGTAGTACTGCTGCCTCTTTGATGGAAGTTGTCCTAGTGCTCAAGTTTTGGGGGAACACTTTGCTGGCAGTGGCAGCTATGCTGCTGCTGCTTGCGTTGCTGACTGCTTTCCGGTTATGCCTTCAAGAACCAATGTTCGCGACAGTTGCTAAATGTTTCAGCGACTACATTGACAAGGTCCCCCAAATGATAGTTTAGCTGAAGGGGCACGTTCATGTATTTCCTGTGTTGACATATCTGTGACTTCTCAAGACAAACAAAACCGCATGTTCATAACAC
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| CDS seq | ATGGTGGTTGTGCCCTACTGGGTGCTATGCGCGATGGGGCAGTTTCATGGAGGTGACAGCTTTGCGGTGTCCCAGTTTCTTCTCTTCCTCGGCTCCACGCTGGGGGCGCTGGCGCTAATGGCGGCGCGGCTGTCGCAGCTCGCCGGAGCAGCACCGGGCTTAGCGCCGGCGTCGGAACTTCTCCGCAGGGCCACGCTCGTGGTGATGCTGGTGACGGCGCACGCTGCGGCCGCCGAGCTGCTGGGCGAGGCCACGATAGCGCTGCTCTGCCTGCCGGAGCTCGCGCCGGCGCTCTTCTGGTTCACCCTTCACCTCGACGGTGAAAGCTCGCCGGCCGCCACCATCGACGGCATCAAATCGCACAGGAATGTGCTGTCCGTTCTCGCTGCCGCAGCCGTCGCCAGTGTTGCGTACCTCGCGGCCGCCATGGGTGAGCGTGGCCTGTCCGTGAGCACCATCACGATGGTGTCTTGCGGCGTCTCAGGGCTTCTGGTCCGCTGCGCTGTGGTCGTGCTCGGTCAGTGGCCGGGGCAAGCTGAGACGGCCGGTAGTACTGCTGCCTCTTTGATGGAAGTTGTCCTAGTGCTCAAGTTTTGGGGGAACACTTTGCTGGCAGTGGCAGCTATGCTGCTGCTGCTTGCGTTGCTGACTGCTTTCCGGTTATGCCTTCAAGAACCAATGTTCGCGACAGTTGCTAAATGTTTCAGCGACTACATTGACAAGGTCCCCCAAATGATAGTTTAG
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| Protein seq | MVVVPYWVLCAMGQFHGGDSFAVSQFLLFLGSTLGALALMAARLSQLAGAAPGLAPASELLRRATLVVMLVTAHAAAAELLGEATIALLCLPELAPALFWFTLHLDGESSPAATIDGIKSHRNVLSVLAAAAVASVAYLAAAMGERGLSVSTITMVSCGVSGLLVRCAVVVLGQWPGQAETAGSTAASLMEVVLVLKFWGNTLLAVAAMLLLLALLTAFRLCLQEPMFATVAKCFSDYIDKVPQMIV |
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| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| LOC_Os01g24430 | LOC_Os01g24430.1 | Chr01 | 13775186 | 13776654 | + | MSU_osa1r7 | ||
| CDS seq | ATGGTGGTTGTGCCCTACTGGGTGCTATGCGCGATGGGGCAGTTTCATGGAGGTGACAGCTTTGCGGTGTCCCAGTTTCTTCTCTTCCTCGGCTCCACGCTGGGGGCGCTGGCGCTAATGGCGGCGCGGCTGTCGCAGCTCGCCGGAGCAGCACCGGGCTTAGCGCCGGCGTCGGAACTTCTCCGCAGGGCCACGCTCGTGGTGATGCTGGTGACGGCGCACGCTGCGGCCGCCGAGCTGCTGGGCGAGGCCACGATAGCGCTGCTCTGCCTGCCGGAGCTCGCGCCGGCGCTCTTCTGGTTCACCCTTCACCTCGACGGTGAAAGCTCGCCGGCCGCCACCATCGACGGCATCAAATCGCACAGGAATGTGCTGTCCGTTCTCGCTGCCGCAGCCGTCGCCAGTGTTGCGTACCTCGCGGCCGCCATGGGTGAGCGTGGCCTGTCCGTGAGCACCATCACGATGGTGTCTTGCGGCGTCTCAGGGCTTCTGGTCCGCTGCGCTGTGGTCGTGCTCGGTCAGTGGCCGGGGCAAGCTGAGACGGCCGGTAGTACTGCTGCCTCTTTGATGGAAGTTGTCCTAGTGCTCAAGTTTTGGGGGAACACTTTGCTGGCAGTGGCAGCTATGCTGCTGCTGCTTGCGTTGCTGACTGCTTTCCGGTTATGCCTTCAAGAACCAATGTTCGCGACAGTTGCTAAATGTTTCAGCGACTACATTGACAAGGTCCCCCAAATGATAGTTTAG
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| Protein seq | MVVVPYWVLCAMGQFHGGDSFAVSQFLLFLGSTLGALALMAARLSQLAGAAPGLAPASELLRRATLVVMLVTAHAAAAELLGEATIALLCLPELAPALFWFTLHLDGESSPAATIDGIKSHRNVLSVLAAAAVASVAYLAAAMGERGLSVSTITMVSCGVSGLLVRCAVVVLGQWPGQAETAGSTAASLMEVVLVLKFWGNTLLAVAAMLLLLALLTAFRLCLQEPMFATVAKCFSDYIDKVPQMIV
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.037960 | 0.381483 | 0.0 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_01g0347200 | SBH | 0.118631 | 0.243319 | 3.853573 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os01g24340 | SBH | 0.0 | 0.0 | 0.254067 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os01g0347200 | SBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_01g0016060 | RBH | 0.137664 | 1.901550 | 0.459572 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_01g0015680 | RBH | 0.0 | 0.0 | 0.214266 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_01g0015920 | RBH | 0.0 | 0.0 | 0.542686 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_01g0015380 | RBH | 0.000000 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_01g0015480 | RBH | 0.0 | 0.0 | 0.0 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_01G0232100 | RBH | 3.471048 | 9.4935205 | 0.324061 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_01g0015460 | RBH | 0.082485 | 0.0 | 0.0 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_01G0229200 | RBH | 1.4762585 | 4.314178 | 0.285945 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_01g0015420 | RBH | 0.000000 | 0.108019 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_01g0015390 | RBH | 0.118589 | 6.675484 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_01g0015600 | RBH | 5.968603 | 9.657390 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_01g0015470 | RBH | 0.605144 | 0.081447 | 0.738291 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_01g0015270 | RBH | 0.156796 | 1.373509 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_01G015740 | RBH | 0.154889 | 0.0 | 0.936880 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_01g0015510 | RBH | 0.0 | 3.245520 | 1.677222 |
