Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLima_11g0024520 | OGI:11082190 | 8/16 | LIMA | Os127564RS1 | Gramene(+IsoSeq) | Chr11:30518120-30522067 | ||||||||
| Gene Symbol | RYMV3, OsRYMV3, - | ||||||||||
| DNA seq | atggagagagagaggatagatgtcgcgacaggggcgttggggagcctcctgcccaagctggagctgctgctcgaagatggattcaagcataatctgccgaagagcgcaaggcatgacatccacttactcttgatggaactaaagatgatctgcacagtcctccgCcgcgacttcgcggaggagcagaaGgggcagatgatgaagctgtgggcactggatgtccaggagctctcgtacgacgtggaggatgcagtcgacaacatcctggtacgcctcaagggccttgagtccaccgaagcaagcagcacgagatcgaggctcagggcggcaacaacccataagctctttgacgagatcaaagacatcaagtcacgcgtcagggaggtatgcgaaatgcgtgatcagtacatgatcaggatagatgacagtctacataagcctcaagtttctactatctacaaccctccaagcctacctgatcgtctgtacgtcgaccagcacagcctagttgggattgatcaggcagcggacgagctaatagggatgttggcattggagggtgatgcgttcgagcggcgattgaaatgggaggactaggcaagacaactcttgccaaactagtctaccacaggcttaaggatcagtttcaatttggagcccttgtttctgtgagtcagtgtcctgacatgaagaaagttttccaggacatgctctatcaactgcatgagggagattatgaccatgtagataagggtgaagagcaactcatccatgcaagccgagactcccTtcagaacaagaggtacatatataccacatccaccattgccacacgctttatgagtattcttggttttcaaCcgattaattggcggttgctttttagactttagtccacaccgtacccgtacgtgctagtacaaattaatcgtcaaaagttggaattgcggttttgtagggtcacatctcaatgcatggctataacatgcatcatagcatatgcttcatgattgatggctcccattttcagatttggttgtcatatatatctgctctttttattggtgcgccagctagactatataaacactaactgtccacacactaacaaaagtcccaactaatAaaaaaaaATAGTGAACAAATGTGGTTATCCAACTAAATATAATTGAGTTAATTATAATGGTCAAAATATTAAAACAGTACTATATAATAAAAATATAGTGAAGAAATGTGGTTATCCAACTAAATTATTTATGAATTTTATAATTATTAAATTAGGAAAATTAAATTGAGACTCCAAGAAAACAACTTATTAATCCGAATTTTGAAACTATCAAGCCATGAAAAATACTATTAATGAGACAAAACCAAGCCCCACATCTTAATTATTAATTCTGAATATTGTAAATATTTAACCATGGATAACTAACTAAGACTCCGCAaaaaaaaaaacttgtgtttattaattctattgtttaataaaattaaattgtttttcggagtattttaaccagtttacatataacatttattaaatattaggtgcaaagtgcatagtacaagtatcccatgcgaatgcacatgttaccgattagttttactaattcgtatccctttgacatgaatataggtactttattattgttgatgacatctggtctatggaagcatggaacatgatcagattagctttgttggaaaataacaacgggagtagagtaatcacaacaacccgtatatttaaagttgcatcaagtgctgatgatgtttatacaatgcggcccctctctcctgagaactccaaaagattactctacaaaagaatattatttagtggtgaatacaattatgttgtggccgaggttggtgacaaattattggagaaatatgatggcttgccattagctgtccttacaatagctggtacattggctggcaaaccaattgaacaatggtataaggtatacaattctattgcttttgggcatgtaaatggcagagttatggatgatatgctacatatattgtctttgagctatgatgatctaccgtcacatttaaagacttgcttgttgtatctaagcatatttccagaagattaTttaatcaagaaagactttttaatttggaggtggatagctgaaggttttattgaatggcaacatatcctatgcacacaggcccacacgtgtacacacgtgcacaccaactaaaaaatatcaccaaaaaatctagaaaaaatcatacagatactttcaattgtattacacctagggttaaaatcttaacgtcaaattcattatattttagccgtaacAaaaaaaacaaaaaatatgacaggtttaaggttgcaattttgtcagaattttatcttttttattattctctatgtagaatgaatttgaagatgcgattttgcacgtagatgtaatactattgaaagtacatgtatgaatttttctagaattttttgtgataatttttagttggtgtacacggtgtgtacacgcgagggcctgtgtgcataggatacgctcccttattgaatatgatgacggtagaaacttatttgaaatcggagagaattacttcaaggagctaataaacaggagcatgatccagccagtagaggtcggtgacaaagactcggtggatggttgccgtgttcatggtgcggtgcttcatctcctccgttacctcgcaagagaagaaaactttgttattctcctgacagacaacgagcaaaacatatccttaggaaggggtaagccgcgcaggttagccctccagaaaggaaataatgaagaccacactctgcagaatgacattagcttggcgaaagtgaggtcatttgatgcaagtatgtgttctgctaatatgatgccgctactgtcagggtttaaggttttgcgtgttttagctttagaacactgtccatccatcaaaagttaccatcttaagtacgttggaaagttatttcTgttgaggtacttaggactagtggggacacctatcagtgagctcccagatggaataggagaactagagtttctacagacactggacttgagggaaactggcatacaagaactgccacggaccatctgtcgcctaagaaaactgatgtgcctttgtgttgacagcactgcaaaattgcccagtgggattcggaacctcgtagccctggaggacctgcggttatacccagtgatgactcttcactttgttaaagaagagttgggacagctgacgacaaaactgaggtttcttgaaatccgctttaaagaactggatgagcaaatggaggatgctttcttgcggtctctgagcaacctgcaaaacctggaaactctcgtcgttgatgttcttggtggatcattcaactttgatcgcatggcggcaccgcttcctcgtctttggagattcaaagcagtgaccatgaccagaaccgcgttgcccgcgtggacagggagtcttttagcactctcctacttatccatcgaggccacggagctgcgccagggggacctgaagatccttggagggttgccggttcttcgttccctgtggatatcatcaagatcaaatcaaaggccgctggtgatcaccgtcgaggacggattccgtgaactgagagtgtttactctatggaacggtgccttcggaccaatatttgaagaaggagccatgccaagtgttgagagagttaagttcagtttcagcccgcgcgatgctcattttggcttcaatttgaagaacctgcgctcacttaagcatgtcaccgtctatctccccgtttattatggaaattccgaggtgcattcagatgtggaagccgcactgaggcacgaaacctacatctacatgcaccccagacgtCccacaattacagtgatatgggacggcgaagaatcaacaggttcttacggccttactctcatttag
More
|
||||||||||
| CDS seq | atggagagagagaggatagatgtcgcgacaggggcgttggggagcctcctgcccaagctggagctgctgctcgaagatggattcaagcataatctgccgaagagcgcaaggcatgacatccacttactcttgatggaactaaagatgatctgcacagtcctccgCcgcgacttcgcggaggagcagaaGgggcagatgatgaagctgtgggcactggatgtccaggagctctcgtacgacgtggaggatgcagtcgacaacatcctggtacgcctcaagggccttgagtccaccgaagcaagcagcacgagatcgaggctcagggcggcaacaacccataagctctttgacgagatcaaagacatcaagtcacgcgtcagggaggtatgcgaaatgcgtgatcagtacatgatcaggatagatgacagtctacataagcctcaagtttctactatctacaaccctccaagcctacctgatcgtctgtacgtcgaccagcacagcctagttgggattgatcaggcagcggacgagctaatagggatgttggcattggagggactaggcaagacaactcttgccaaactagtctaccacaggcttaaggatcagtttcaatttggagcccttgtttctgtgagtcagtgtcctgacatgaagaaagttttccaggacatgctctatcaactgcatgagggagattatgaccatgtagataagggtgaagagcaactcatccatgcaagccgagactcccTtcagaacaagaggtactttattattgttgatgacatctggtctatggaagcatggaacatgatcagattagctttgttggaaaataacaacgggagtagagtaatcacaacaacccgtatatttaaagttgcatcaagtgctgatgatgtttatacaatgcggcccctctctcctgagaactccaaaagattactctacaaaagaatattatttagtggtgaatacaattatgttgtggccgaggttggtgacaaattattggagaaatatgatggcttgccattagctgtccttacaatagctggtacattggctggcaaaccaattgaacaatggtataaggagctaataaacaggagcatgatccagccagtagaggtcggtgacaaagactcggtggatggttgccgtgttcatggtgcggtgcttcatctcctccgttacctcgcaagagaagaaaactttgttattctcctgacagacaacgagcaaaacatatccttaggaaggggtaagccgcgcaggttagccctccagaaaggaaataatgaagaccacactctgcagaatgacattagcttggcgaaagtgaggtcatttgatgcaaggtttaaggttttgcgtgttttagctttagaacactgtccatccatcaaaagttaccatcttaagtacgttggaaagttatttcTgttgaggtacttaggactagtggggacacctatcagtgagctcccagatggaataggagaactagagtttctacagacactggacttgagggaaactggcatacaagaactgccacggaccatctgtcgcctaagaaaactgatgtgcctttgtgttgacagcactgcaaaattgcccagtgggattcggaacctcgtagccctggaggacctgcggttatacccagtgatgactcttcactttgttaaagaagagttgggacagctgacgacaaaactgaggtttcttgaaatccgctttaaagaactggatgagcaaatggaggatgctttcttgcggtctctgagcaacctgcaaaacctggaaactctcgtcgttgatgttcttggtggatcattcaactttgatcgcatggcggcaccgcttcctcgtctttggagattcaaagcagtgaccatgaccagaaccgcgttgcccgcgtggacagggagtcttttagcactctcctacttatccatcgaggccacggagctgcgccagggggacctgaagatccttggagggttgccggttcttcgttccctgtggatatcatcaagatcaaatcaaaggccgctggtgatcaccgtcgaggacggattccgtgaactgagagtgtttactctatggaacggtgccttcggaccaatatttgaagaaggagccatgccaagtgttgagagagttaagttcagtttcagcccgcgcgatgctcattttggcttcaatttgaagaacctgcgctcacttaagcatgtcaccgtctatctccccgtttattatggaaattccgaggtgcattcagatgtggaagccgcactgaggcacgaaacctacatctacatgcaccccagacgtCccacaattacagtgatatgggacggcgaagaatcaacaggttcttacggccttactctcatttag
More
|
||||||||||
| Protein seq | MERERIDVATGALGSLLPKLELLLEDGFKHNLPKSARHDIHLLLMELKMICTVLRRDFAEEQKGQMMKLWALDVQELSYDVEDAVDNILVRLKGLESTEASSTRSRLRAATTHKLFDEIKDIKSRVREVCEMRDQYMIRIDDSLHKPQVSTIYNPPSLPDRLYVDQHSLVGIDQAADELIGMLALEGLGKTTLAKLVYHRLKDQFQFGALVSVSQCPDMKKVFQDMLYQLHEGDYDHVDKGEEQLIHASRDSLQNKRYFIIVDDIWSMEAWNMIRLALLENNNGSRVITTTRIFKVASSADDVYTMRPLSPENSKRLLYKRILFSGEYNYVVAEVGDKLLEKYDGLPLAVLTIAGTLAGKPIEQWYKELINRSMIQPVEVGDKDSVDGCRVHGAVLHLLRYLAREENFVILLTDNEQNISLGRGKPRRLALQKGNNEDHTLQNDISLAKVRSFDARFKVLRVLALEHCPSIKSYHLKYVGKLFLLRYLGLVGTPISELPDGIGELEFLQTLDLRETGIQELPRTICRLRKLMCLCVDSTAKLPSGIRNLVALEDLRLYPVMTLHFVKEELGQLTTKLRFLEIRFKELDEQMEDAFLRSLSNLQNLETLVVDVLGGSFNFDRMAAPLPRLWRFKAVTMTRTALPAWTGSLLALSYLSIEATELRQGDLKILGGLPVLRSLWISSRSNQRPLVITVEDGFRELRVFTLWNGAFGPIFEEGAMPSVERVKFSFSPRDAHFGFNLKNLRSLKHVTVYLPVYYGNSEVHSDVEAALRHETYIYMHPRRPTITVIWDGEESTGSYGLTLI |
||||||||||
| Function | Disease resistance protein RGA5 [UniProtKB/Swiss-Prot:Q2R8L1] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLima_11g0024520 | OsLima_11g0024520.01 | Chr11 | 30518120 | 30522067 | + | NAM | ||
| CDS seq | atggagagagagaggatagatgtcgcgacaggggcgttggggagcctcctgcccaagctggagctgctgctcgaagatggattcaagcataatctgccgaagagcgcaaggcatgacatccacttactcttgatggaactaaagatgatctgcacagtcctccgCcgcgacttcgcggaggagcagaaGgggcagatgatgaagctgtgggcactggatgtccaggagctctcgtacgacgtggaggatgcagtcgacaacatcctggtacgcctcaagggccttgagtccaccgaagcaagcagcacgagatcgaggctcagggcggcaacaacccataagctctttgacgagatcaaagacatcaagtcacgcgtcagggaggtatgcgaaatgcgtgatcagtacatgatcaggatagatgacagtctacataagcctcaagtttctactatctacaaccctccaagcctacctgatcgtctgtacgtcgaccagcacagcctagttgggattgatcaggcagcggacgagctaatagggatgttggcattggagggactaggcaagacaactcttgccaaactagtctaccacaggcttaaggatcagtttcaatttggagcccttgtttctgtgagtcagtgtcctgacatgaagaaagttttccaggacatgctctatcaactgcatgagggagattatgaccatgtagataagggtgaagagcaactcatccatgcaagccgagactcccTtcagaacaagaggtactttattattgttgatgacatctggtctatggaagcatggaacatgatcagattagctttgttggaaaataacaacgggagtagagtaatcacaacaacccgtatatttaaagttgcatcaagtgctgatgatgtttatacaatgcggcccctctctcctgagaactccaaaagattactctacaaaagaatattatttagtggtgaatacaattatgttgtggccgaggttggtgacaaattattggagaaatatgatggcttgccattagctgtccttacaatagctggtacattggctggcaaaccaattgaacaatggtataaggagctaataaacaggagcatgatccagccagtagaggtcggtgacaaagactcggtggatggttgccgtgttcatggtgcggtgcttcatctcctccgttacctcgcaagagaagaaaactttgttattctcctgacagacaacgagcaaaacatatccttaggaaggggtaagccgcgcaggttagccctccagaaaggaaataatgaagaccacactctgcagaatgacattagcttggcgaaagtgaggtcatttgatgcaaggtttaaggttttgcgtgttttagctttagaacactgtccatccatcaaaagttaccatcttaagtacgttggaaagttatttcTgttgaggtacttaggactagtggggacacctatcagtgagctcccagatggaataggagaactagagtttctacagacactggacttgagggaaactggcatacaagaactgccacggaccatctgtcgcctaagaaaactgatgtgcctttgtgttgacagcactgcaaaattgcccagtgggattcggaacctcgtagccctggaggacctgcggttatacccagtgatgactcttcactttgttaaagaagagttgggacagctgacgacaaaactgaggtttcttgaaatccgctttaaagaactggatgagcaaatggaggatgctttcttgcggtctctgagcaacctgcaaaacctggaaactctcgtcgttgatgttcttggtggatcattcaactttgatcgcatggcggcaccgcttcctcgtctttggagattcaaagcagtgaccatgaccagaaccgcgttgcccgcgtggacagggagtcttttagcactctcctacttatccatcgaggccacggagctgcgccagggggacctgaagatccttggagggttgccggttcttcgttccctgtggatatcatcaagatcaaatcaaaggccgctggtgatcaccgtcgaggacggattccgtgaactgagagtgtttactctatggaacggtgccttcggaccaatatttgaagaaggagccatgccaagtgttgagagagttaagttcagtttcagcccgcgcgatgctcattttggcttcaatttgaagaacctgcgctcacttaagcatgtcaccgtctatctccccgtttattatggaaattccgaggtgcattcagatgtggaagccgcactgaggcacgaaacctacatctacatgcaccccagacgtCccacaattacagtgatatgggacggcgaagaatcaacaggttcttacggccttactctcatttag
More
|
|||||||
| Protein seq | MERERIDVATGALGSLLPKLELLLEDGFKHNLPKSARHDIHLLLMELKMICTVLRRDFAEEQKGQMMKLWALDVQELSYDVEDAVDNILVRLKGLESTEASSTRSRLRAATTHKLFDEIKDIKSRVREVCEMRDQYMIRIDDSLHKPQVSTIYNPPSLPDRLYVDQHSLVGIDQAADELIGMLALEGLGKTTLAKLVYHRLKDQFQFGALVSVSQCPDMKKVFQDMLYQLHEGDYDHVDKGEEQLIHASRDSLQNKRYFIIVDDIWSMEAWNMIRLALLENNNGSRVITTTRIFKVASSADDVYTMRPLSPENSKRLLYKRILFSGEYNYVVAEVGDKLLEKYDGLPLAVLTIAGTLAGKPIEQWYKELINRSMIQPVEVGDKDSVDGCRVHGAVLHLLRYLAREENFVILLTDNEQNISLGRGKPRRLALQKGNNEDHTLQNDISLAKVRSFDARFKVLRVLALEHCPSIKSYHLKYVGKLFLLRYLGLVGTPISELPDGIGELEFLQTLDLRETGIQELPRTICRLRKLMCLCVDSTAKLPSGIRNLVALEDLRLYPVMTLHFVKEELGQLTTKLRFLEIRFKELDEQMEDAFLRSLSNLQNLETLVVDVLGGSFNFDRMAAPLPRLWRFKAVTMTRTALPAWTGSLLALSYLSIEATELRQGDLKILGGLPVLRSLWISSRSNQRPLVITVEDGFRELRVFTLWNGAFGPIFEEGAMPSVERVKFSFSPRDAHFGFNLKNLRSLKHVTVYLPVYYGNSEVHSDVEAALRHETYIYMHPRRPTITVIWDGEESTGSYGLTLI
More
|
|||||||
| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.050314 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_11g0700100 | SBH | 0.0 | 0.0 | 0.474086 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os11g46130 | RBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os11g0700100 | SBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_11g0024470 | RBH | 0.0 | 0.0 | 0.0 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_11g0024330 | RBH | 0.0 | 1.243308 | 0.0 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_11g0024140 | SBH | 0.0 | 1.744805 | 0.0 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_11g0023810 | SBH | 0.0 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_11g0024530 | SBH | 0.000000 | 0.000000 | 1.543944 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_11G0442100 | RBH | 0.0366395 | 3.949619 | 0.2105595 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_11g0019280 | SBH | 0.0 | 0.0 | 0.0 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_11G0439600 | SBH | 0 | 0 | 0.0033165 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_11g0024810 | SBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_11g0024560 | RBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_11g0018750 | SBH | 0.0 | 4.188165 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_11g0024040 | SBH | 0.0 | 0.0 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_11g0024440 | SBH | 0.0 | 0.537527 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_11G018790 | SBH | 0.000000 | 0.000000 | 0.0 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_11g0019010 | SBH | 0.0 | 0.0 | 0.000000 |
