Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsNip_11g0700100 | OGI:11083160 | 16/16 | Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | Chr11:28652206-28655917 | ||||||||
| Gene Symbol | RYMV3, OsRYMV3 | ||||||||||
| DNA seq | TATTCACGCTAGCTGCTTGTTGCACTCAACATATTTCCTCCAATGTTCCTGCCTGTGGCTCACTGTACTGAGAGTCCCTGCTGCGAAATAATGTCACCATATTGAGCGGCCGAGCTGAGTAGATCTGTTGGAGACCTTCATGTTGAGGTACACTGTGCCCTTTAATTTCTTTAATTCATCTTTTGTTAAGAAATTTGGTTCTATGAGAATTTCTTACCTCCCCTAAAATGAACAATTGTTGATCTTTCTTGTTTGCGATTCATTTGCCCCAGGAACAGGATCTTTTGCACAGGAATTAAGAACAACTGTATGTAGGTAGGTAGCAGTAGTACTAAAAAAATTGATGTCAAAAGGCAAGCTGAGTGTTTAGCTCGGGTGACAGGCTCAATGAAAGCCTCTTAAGAGACGAGTCGATCGATGATCATTAGTACACATAGAAATTGTGCACCTCACTAGCTAGGAGCCCAGACAGTGAGAGAGCATCATATGATCTATATTACATACCAATTGACCGATTGAAAATGGAGATCGCCAGAGGGGCAATGGGCAGTTTGCTCTCCAAGCTGGGAGAGTTGCTCAAGGAGGAGTACAACCTGCAAAGGAGCGTGAAGAAAGACATCAGATTCCTGTCAAGAGAGCGGCCGATGATGCACGCTGCTCTACGCATGGTAGGCGAGGTGCCACTCGATCAGCTAGACGATCTGGTCAAGATATGGGCACGTGAGGTCCGGGAGCTGTCCTATGACATGGAGGACATCGCCGACACCTTCAAGGTGCACATCGAGCAGGGCTCTCAGCAAGCTGACCTGGGGTGCACCCAAGGGTTCGCGAGGAAGATGGTGAACTTGTTCAAGAAGGGCAGGTCCCATCGCCAAATTGTCAATGAGATCAAAAACATTAAGGATCGTGTCAAGGAGGTGGCAGAACGGCGTGATAGGTACAAGGTCGAAAGCATTTCTGCTAGTTATGCACAAGCCACAGCCACTATCGACCCTCGTCTAACAGCTCTATTCAAGAAGGTCACCGAGCTCGTTGGCATAAATGGGGCAAGGGACATGCTAATCAGGAGGCTTTCCAAAGGTGCGGGTGCATTCGACGAGAAACTCAAGGTTGTCTCTGTCATTGGAGTTGGAGGATTGGGCAACACAACTCTTGCCAAAGCTGTTTATGACATACTAGTACATGGGGGGCAATTTGATTGTTGTGCTTTTGCTTCTGTGGGTCAAAACCCTGACATGAAAAGATTTTTCAAGGACATTCTTCTTCAACTTGACAAGCATAAATATATGCACATCACTGCTGTGACATTAATGGATGACAGGCAGCTCATCAATGAGCTACTAGAATTCCTTGATAAAAAGAGGTATGCCTTCTCATCCTCAAGTATATATGTAGATTTGTATATTTGGCAAGCATATTTATTATTGAGCATTAGGTTGTACAGTGCAAAATATGCAATTTTACTAATATATTCCTGAGCCCTGCATTCTCATTTTGATGATAGGTACTTTTTTTTTTCCTGATGATAGGTACTTGATTGTTATTGATGATATATGGGAGACATCAACATGGGATTTGATTAAAAATGCTTTGCCAGATAGTAATTGTGAAAGTAGAATAATCACAACTACTCGTATTTCCAAAGTTGCTGAACAGGTTGGTGACATTTACAACATACAACCGCTTTTTGATGACAATGCTGAAAAATTATTCTACACCAGAATATTTGGTTTTGATGGAAAATATCCAAGTAATCAGTTGACTGAGGTATCAAAGAAGATTTTGAAGAAATGTGGTGGTATAAACCCAACAATGAATGGTCCAAGGTTTATGACTCTATTGGGTTTGGACAAGAAGACAGCAAGGATGTTCGGAACACAAGAAAGATATTGCCTTTTAGCTATTACGATCTACCCATTCAATTAAGGACTTGCTTATTGTATCTATCCATATTTCCAGAAGATTATTGGATTGAGAAATACCAATTGATTTGGAGATGGATAGCTGAAGGTTTTGTCCACGAGGAAAAGGGGCTAGTGTTATTTGAGCAGGGGGAGAGATTCCTCGACGAGCTGATAAATAGAAGCTTAATCCAGCCATCAGATCGTTATCATAGTGGTATTGTAAATGGCTGTCGTGTTCATGACATGGTGCTTGATCTCATTCGTTCCTTGTCGAGTGAAGAGAATTTTTGTGCTATGCTGCATAAGGAACAAACCATGCTTTCACAGAACAACATTGTCCGCAGGTTAGCCATCCACAAAAGAATTCTAGAGCATAACCCTAAGATGAATGTGCGCATGGCACAAGTGAGGTCATTCAATGCCTACATGTGCGGTCATATGGATTGTATGCCCCCGCTATGGAGCTTTAAAGTTGTGCGCGTGTTAGTCTTAGATTTATGTAATTTTACGGGAAGTCCTCATCTTGAGCCTATTGGGAAATTGCTTCACCTCAAGTACCTAGGACTAGTGAACACGGCCATTGCTGAGCTCCCCAAGGAGGTTGGGAACCTCACATTGTTGCAGACGTTAGACATATGGCGCACTAGTATAGAAGAACTTCCATCAACTGTTGGTAAGCTGAAGCGGCTGATCTGCCTGCGAGCTGACAGCAACACGAGAGTGCCAGCGGGGGTGATAGGGAGCTTAACATCCCTACAGCAACTGCGCCTTCACTCTGCTGACAAGTCCCCGAGCGCCGTTGTAGAGCTAGGTAAGCTGGTGGAGCTAAGAGTGCTTGAAATCCAGTTCTGCAAGATGGATCAGAACTCACGGAGATCTCTAGTGGAATCCGTGTGCAACCTTTGCAACATACAAGTTCTCGAAGTTCACTATGATCACTCTGGACCTACAGAGTGGGCGTACCTAGGTAGCAGCTGGGAAGGCTGGGTGCCCCATCCACGGCTCCGCCAGTTCTTGCTGAGAGCCATCTCTCTGCCATGACTACCGCTGTGGATCAACTCCTCGCACGTCGCACACCTTTCCTACCTTCAACTAGGAGTGGGCTTTATAGATGTCCAGGATCTACACACTCTTGGGAGGTTGCCAGCGCTTCGTTGCCTCTACATATCTAGCGGTATTCTGCTATCCTACGTCGTCGCCGGTGGAGATGGATTGTTTCAAAATCTAAGGCATTGCACGACCAACTTAGAGTTCATGTTTCAACAGGGAGCAATGCCGATGCTTGCGCACCTCGAGTTCAGGGTCAGTGTGCTGGGCCTGGGCAGGAGGGAGGACCCTGCAGGCTTGGGGTTGGGGCACCTTCCTTTCCTTGAACTTGTTACGCTGTACTTGCAATGCTCTGGTGCCAGCATTGTGGAGGTTGCGGAAGTGAAGGTAATGCTGAGGCATGAGGTCCATGTTCATCCCAACCATCCTACCCTTAATTTGGAAGAATACCATTGCCAAAGCCAACAGGTTTGTACATACATACAGATGATTGTCAATGTGCAAACTCTGTTTATTTTCTCTCTGTTTTGGCCTTAACTTTTATCTCTTGATTTCTTTCTTAATTATTTCTAGCCCGAAGATGATGACAGCGGTGGATCCGTATAAAAATATTTACTAGTCAATGGACTGGGCGAGACCAGTGACCAGTACTGTACATAGCCTGCATTTGTTCAGGTTTGTTTAGCTGTAACAGAATTTTCATTGAACATGGTTCCAAAATTCAGAAGTTGGTAATTCTACAACCAACTGGTATATGCTTG
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| CDS seq | ATGGATGACAGGCAGCTCATCAATGAGCTACTAGAATTCCTTGATAAAAAGAGGTACTTGATTGTTATTGATGATATATGGGAGACATCAACATGGGATTTGATTAAAAATGCTTTGCCAGATAGTAATTGTGAAAGTAGAATAATCACAACTACTCGTATTTCCAAAGTTGCTGAACAGGTTGGTGACATTTACAACATACAACCGCTTTTTGATGACAATGCTGAAAAATTATTCTACACCAGAATATTTGGTTTTGATGGAAAATATCCAAGTAATCAGTTGACTGAGGTATCAAAGAAGATTTTGAAGAAATGTGGTGGTATAAACCCAACAATGAATGGTCCAAGGTTTATGACTCTATTGGGTTTGGACAAGAAGACAGCAAGGATGTTCGGAACACAAGAAAGATATTGCCTTTTAGCTATTACGATCTACCCATTCAATTAA
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| Protein seq | MDDRQLINELLEFLDKKRYLIVIDDIWETSTWDLIKNALPDSNCESRIITTTRISKVAEQVGDIYNIQPLFDDNAEKLFYTRIFGFDGKYPSNQLTEVSKKILKKCGGINPTMNGPRFMTLLGLDKKTARMFGTQERYCLLAITIYPFN |
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| Function | Disease resistance protein RGA5 [UniProtKB/Swiss-Prot:Q2R8L1] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNip_11g0700100 | OsNip_11t0700100-01 | Chr11 | 28653511 | 28655917 | + | RAP2018-11-26 | ||
| CDS seq | ATGGATGACAGGCAGCTCATCAATGAGCTACTAGAATTCCTTGATAAAAAGAGGTACTTGATTGTTATTGATGATATATGGGAGACATCAACATGGGATTTGATTAAAAATGCTTTGCCAGATAGTAATTGTGAAAGTAGAATAATCACAACTACTCGTATTTCCAAAGTTGCTGAACAGGTTGGTGACATTTACAACATACAACCGCTTTTTGATGACAATGCTGAAAAATTATTCTACACCAGAATATTTGGTTTTGATGGAAAATATCCAAGTAATCAGTTGACTGAGGTATCAAAGAAGATTTTGAAGAAATGTGGTGGTATAAACCCAACAATGAATGGTCCAAGGTTTATGACTCTATTGGGTTTGGACAAGAAGACAGCAAGGATGTTCGGAACACAAGAAAGATATTGCCTTTTAGCTATTACGATCTACCCATTCAATTAA
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| Protein seq | MDDRQLINELLEFLDKKRYLIVIDDIWETSTWDLIKNALPDSNCESRIITTTRISKVAEQVGDIYNIQPLFDDNAEKLFYTRIFGFDGKYPSNQLTEVSKKILKKCGGINPTMNGPRFMTLLGLDKKTARMFGTQERYCLLAITIYPFN |
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNip_11g0700100 | OsNip_11t0700100-02 | Chr11 | 28652206 | 28654384 | + | IsoSeq | ||
| CDS seq | ATGAGATCAAAAACATTAAGGATCGTGTCAAGGAGGTGGCAGAACGGCGTGATAGGTACAAGGTCGAAAGCATTTCTGCTAGTTATGCACAAGCCACAGCCACTATCGACCCTC |
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| Protein seq | MRSKTLRIVSRRWQNGVIGTRSKAFLLVMHKPQPLSTL |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | 0.474086 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os11g43700 | SBH | 0.338432 | 0.094341 | 0.064541 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os11g0700100 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_11g0024710 | RBH | 0.0 | 0.0 | 0.0 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_11g0024700 | RBH | 0.0 | 0.809368 | 0.0 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_11g0024140 | RBH | 0.0 | 1.744805 | 0.0 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_11g0024230 | RBH | 0.0 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_11g0024530 | RBH | 0.000000 | 0.000000 | 1.543944 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_11G0447200 | RBH | 0.191858 | 1.176201 | 0.076532 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_11g0025020 | RBH | 0.0 | 0.0 | 0.0 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_11G0439600 | RBH | 0 | 0 | 0.0033165 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_11g0024820 | RBH | 0.0 | 0.000000 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_11g0024940 | RBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_11g0024300 | RBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_11g0024040 | RBH | 0.0 | 0.0 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_11g0024440 | RBH | 0.0 | 0.537527 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_11G024420 | RBH | 0.0 | 0.0 | 0.0 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_11g0024640 | RBH | 0.0 | 0.0 | 0.0 |
