Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsIR64_11g0019280 | OGI:11067340 | 13/16 | IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | Chr11:24601290-24601782 | ||||||||
| Gene Symbol | XA39, Xa39, RYMV3, OsRYMV3 | ||||||||||
| DNA seq | ATGGATAGGTATTTGATAATTGTCGATGACATATGGCAGAAATCAATATGGGAACGGATTAAATGTGCTTTGGTTGATAGTAATTGTGGAAGTAGAGTGATCACGACAACTCGTATTCATAATGTTGCCAAAGAAGTTGGTGATGTTTACCCCATGGAGAAACTTTCTGATGAAAACTCAAAGAGACTATTCGACAAAAGAGTGCTTGGTACTGAATACAGAAGTGTGTCCAGTAATCAATCGGAGGAGGTGACTAAAAAAATACTAAAGAAATGTGATGGTGTACCATTGTCAATAATTACAATAGCTAGTGTGTTGGTTCATAAAGATGACTGGTCCGAGGTCTATGATTCAGTTGGTTTCGGGCCTGAAGATGGGAATGAAGTTGTTCACAACACAAAGAAGATACTTTCATTTAGCTACTATGATCTACCTTCGTACCTACAACGTTGTCTATTGTACCTAAGCATCTATCCAGAAGATGATTCAATAG
More
|
||||||||||
| CDS seq | ATGGATAGGTATTTGATAATTGTCGATGACATATGGCAGAAATCAATATGGGAACGGATTAAATGTGCTTTGGTTGATAGTAATTGTGGAAGTAGAGTGATCACGACAACTCGTATTCATAATGTTGCCAAAGAAGTTGGTGATGTTTACCCCATGGAGAAACTTTCTGATGAAAACTCAAAGAGACTATTCGACAAAAGAGTGCTTGGTACTGAATACAGAAGTGTGTCCAGTAATCAATCGGAGGAGGTGACTAAAAAAATACTAAAGAAATGTGATGGTGTACCATTGTCAATAATTACAATAGCTAGTGTGTTGGTTCATAAAGATGACTGGTCCGAGGTCTATGATTCAGTTGGTTTCGGGCCTGAAGATGGGAATGAAGTTGTTCACAACACAAAGAAGATACTTTCATTTAGCTACTATGATCTACCTTCGTACCTACAACCATCTATCCAGAAGATGATTCAATAG
More
|
||||||||||
| Protein seq | MDRYLIIVDDIWQKSIWERIKCALVDSNCGSRVITTTRIHNVAKEVGDVYPMEKLSDENSKRLFDKRVLGTEYRSVSSNQSEEVTKKILKKCDGVPLSIITIASVLVHKDDWSEVYDSVGFGPEDGNEVVHNTKKILSFSYYDLPSYLQPSIQKMIQ |
||||||||||
| Function | ToMV resistance protein Tm-2(2) [UniProtKB/Swiss-Prot:Q71BG9] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsIR64_11g0019280 | OsIR64_11g0019280.01 | Chr11 | 24601290 | 24601782 | + | NAM | ||
| CDS seq | ATGGATAGGTATTTGATAATTGTCGATGACATATGGCAGAAATCAATATGGGAACGGATTAAATGTGCTTTGGTTGATAGTAATTGTGGAAGTAGAGTGATCACGACAACTCGTATTCATAATGTTGCCAAAGAAGTTGGTGATGTTTACCCCATGGAGAAACTTTCTGATGAAAACTCAAAGAGACTATTCGACAAAAGAGTGCTTGGTACTGAATACAGAAGTGTGTCCAGTAATCAATCGGAGGAGGTGACTAAAAAAATACTAAAGAAATGTGATGGTGTACCATTGTCAATAATTACAATAGCTAGTGTGTTGGTTCATAAAGATGACTGGTCCGAGGTCTATGATTCAGTTGGTTTCGGGCCTGAAGATGGGAATGAAGTTGTTCACAACACAAAGAAGATACTTTCATTTAGCTACTATGATCTACCTTCGTACCTACAACCATCTATCCAGAAGATGATTCAATAG
More
|
|||||||
| Protein seq | MDRYLIIVDDIWQKSIWERIKCALVDSNCGSRVITTTRIHNVAKEVGDVYPMEKLSDENSKRLFDKRVLGTEYRSVSSNQSEEVTKKILKKCDGVPLSIITIASVLVHKDDWSEVYDSVGFGPEDGNEVVHNTKKILSFSYYDLPSYLQPSIQKMIQ |
|||||||
| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | 0.0 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_11g0590700 | SBH | 0.000000 | 0.133840 | 0.418338 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os11g37880 | SBH | 0.000000 | 0.000000 | 0.0 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os11g0590700 | SBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_11g0018860 | SBH | 0.033359 | 2.025336 | 0.335204 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_11g0018930 | SBH | 0.0 | 0.895418 | 0.0 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_11g0018700 | SBH | 0.0 | 0.784291 | 0.236042 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_11g0018500 | SBH | 0.0 | 0.064210 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_11g0018740 | SBH | 0.000000 | 0.000000 | 0.0 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_11G0344600 | SBH | 0.028829 | 0.8824205 | 0.0846545 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_07g0003690 | SBH | 0.0 | 0.000000 | 0.0 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_11G0357400 | SBH | 0.014978 | 13.5441255 | 0.0063985 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_11g0019150 | SBH | 0.0 | 0.037771 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_11g0019300 | SBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_11g0018740 | RBH | 0.0 | 4.139428 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_11g0018450 | SBH | 0.0 | 0.0 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_11g0018600 | SBH | 0.0 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_11G018760 | SBH | 0.0 | 0.0 | 0.0 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_11g0019000 | RBH | 0.085491 | 1.135887 | 0.549001 |
