Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsNip_11g0590700 | OGI:11065270 | 12/16 | Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | Chr11:22427768-22435407 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | CACACCAGCTAAGCAGCAAGCTCTCACTGCACTCACCGCATCGATCTCTACTCGATACACAGCAGCAGCAGCAGCCGCCTAAACCCCCATTAGCTAGCTGCATGCCTCAGCGAGCCATGGAGTCGCCTCCAATCCCCTCTTGAGACAAGCTGTGCCAAGGGCAACGAGTACAAGCCGGAGCTATTGGGCTCTCTACTTTTCAAGGTCAGCTACATCCAATTCAAGGAGACCTTTCTGCACAATATTATACTACCAGTAGAATTAAGGGTAAATTCGTAATTTACTAACATAGTTATTAGGGGTAAATTTGTTACTTACCTTTTTTTTAAGTTGTACAAAGCAAATTAAGAGCTTGCATGGGCTTTATGTGAATTTGTGATTATGAGAGTTTGCAGCAATTAAGTTGGATCGCAAAAAACTGTTGTTCTTTACATATATTGATTCAATTTAGCTAGTGTAAAAACCTGATTTAGTTTGGTACGATATATATAGCTAGCTGAAATATTTTCTAATTTTTTGTGCTTCTCATTGAACTGAAGATATAGTGATGCAACTACTGCGAATGGAGATTTGAAAGCAGTTGATGAGTTATCAATCTACGCCACATCATCATAAGAAACGTGCAGAGAGGGAAAGTGAATTATCAAATGGAGTTGGCCACTGGAGCGATAGGTGCAGTCCTCCCCAAGTTGGGCAAGCTGCTAAAGGAGGAGTATGACCTGCATAATAGTGTGAAAGAGGGGATAAAGTTCCTGAAGGCCGAGCTCGAGTACATGCAACCTGCTCTTAAGAAGGTGTCGAATGTTCCACGAGACCAGCTTGACGAACAAGTCAAGATCTGGGCTAAGGATGTTAGAGAGCTATCGTACAGCATCGAGGACATCATTGACACCTTCATGCTACAGGTGGATGCACTTGAGCCACCCAAGAATAACATCTTCACATGGTTAATCAATAAATGCCACAAGTTGTCCCAGCTAATGATCCACCACAAAATAGGCAATGACATTAAAAGTGTTGAGAACCAAGTCAAGGAGGTGACCGAAAGATACGATAGATATAGGATTGATAGTATTGATGCTAAGCCTCCAATATTTATTGACCCTCGTATCTTGGGACTGTACGAGAAGGTCACCAATCTTGTTGGTGTTGACAAGGCCAGTGAAGATCTAATCAGGATGTTGTTTGTAGGAAGTGATGCATCCAAGATGCTTAAGATTGTATCTGTTCTTGGATTAGGAGGTTTGGGCAAGACAACTCTTGCAAAATTCGTGTTTGACAATCTGAAAGTGCAATTTCAGTGTTTTGCTTTTATTTCGGTTGGTCAGAAACCTGCTGACATCAAGAACGTTCTCAAGCACATCCTGATTGGACTTGACAAACACAAGTACATGGAACTCGATACATCCCAACTAAGTGAAAGTTATTTAACTGATGAGGTCCGTGAATATCTGGATAACAAGAGGTATGTATGCCAGAACCCATCAAATTAATTAATTGATGTACATTAATTATCAGTGTTTACTGATGATTTATTGTGTCTGCTACTAGAAGATCAATTGTTTGTATTAGCAGATCGATGCTACAAGGGTACATTATCTAATATGTATTGGTGTTATATAGATATTTGTCTCTCTCTTTTTTTACATTTATTTGAAACCCCTCAATTTAACCCAAAAAAATTTAACAGTTGACAAAAAAATTAAGGGAAAATGCTAGGAATTTTGATGTGAGTTAGAGAAAAGTTCTTGACCACCTGAAATACTAGCTAGATGTATTGTGTACGTGGCTTTATCTTATCCACTGGCCAGGGACCAATTAGATTTGAAACATATACTCCCTCCGTCAAGAGTACTTTGTGGTAAACATACAATCATTTATGACCATCTCCATGTCAATTTCTTCTTATATTTTTAGGAGTACATGATTAGAAGTAGCAAGGATCAAAAATGTGTTTTTGGAGAGCATATCATGTATTACTATAAGTGACAAGTGAAAAACAACAGAGAGGGCATATATATATAGTTTAGAGAAATATCAATACAACATTTGTATGTTCCCAAATCTATTAGAACTTCTAATAAGATCTATTTGGATAAACAGATTTTTAAATACTTCAGATGAAGAAAATACTATATAAAAGTTGTAGAGAGCTTGATGAGATCAACAACTCCATAGTTGAGTAATATAAAGTGTTAAATACAAATTACAAGTTTTTGACGAATGGAGTAAAGAATAGCATGTGTTGTTGAAGTAAGAAGTGCTTTGAGGCAGTAGCGTAGCTAGGATTTAAAGTAAATGTGGTCCATCTATATGAAGTATGTCAATTAAAAGGGTGATCCGCTATACAAATTTTATTATATTAACTAGCACATATACTATAATTTCAAATTTTTAGGTGTGGTCCATGGACCACGGTGCCACCTAGCTTGCTACGCCACTGCTTTGAGGTGATATGGTAAGGAAGCTATGTGTAGAGAGATGTCAAGTTCAAATCCTATATACGACACACAGCCTAATTTCACGCCAAAAATCACACATGACTTTCTTTTCTTCACCTAAAAAAAAATTCAAAATGCAGGAATACATTTCGGCAGGTAGTTGCGTTAATTTAGTCATGGGTGGATGGGCTAAAAGCACGTGGCAATGCTGATTTATCCGCATGCAGAAAATGTTTTCATGGTAGTAATAATACAAAAGTAAATAAAATTACATAATATATATTAATACAGTTCATAGTTAGGCACATTTCTCACACGTTTAAAGAGATCTCAGCAACCTGCTCCCTGGCCGTTGGATTAAAATCTAATGGCTAGTGGGTTGTCTTCAAGCTCTAGCAACAGAGACCATGAGAGCCAAGAGAGAGTGAGGGAGGGGAAGCCCGGAAGGTGGCAGAAAGAACATACTACGATGGCGCGACGACAATATATAACTTCAGCACTAAGTTTAGAGTTTAGCATTTTGTGGTAGGTGCTGGGTGGGAGGGAGCCTAGTAGAGGAGGAATAGGTGGGTTTCCCTGGGCCTAGAGATATGGCCTTGGGCGCCCGCGACCGGTGGTGGGCGGTGGTGCTAGGTTGGATTCCCATGCACTGCTGGAGAAAGGCTCTTTAGTCCCGGTTTGCAACTCCCTTTAGTCCTGAGTTGCAAACCGGGATTAAAGATGACTATCTAACCGGGACTAAAGATGGTAACGCCACGTGGCTAACGCTTTCATCTTTAGTCTCGGTTGTTGCCAACCGGGACTAGGGTTTTCTTTTTCCCCTTTCTTTCATTTTTTTTGTTGTTCTGCATATCTCAGCCTGACATCCCAAAATTGTTACAATAACAAAATATCATCTCCCGATATCCCAAATCATCCACAACAACAAAATGATCCTCAAGTTACAGATCGAATGAACAAATTATCCTCAACAAAAAAGCATCCACAAATTAAGAGGAAAAAAAAAGGAAATAAAAAAATCCGCCCGCGCCGCGCCCAGCCAGCCGTCTGCCACCCGCCCGGCTCGCTGCGCCACCGCCGCCTGGCCGCCTCCCCTCTCAGATCCAGCGGAGGGGAGGCCGTCTGCCACCTGCCCGCTTCCTCTTGCACCGCCACCCACTATACTGCTGAGTGTCCACTAGAGGAGAGAGGAGCGCGGGGAGGAAAGAGAGATAGAGGAGAGAGGAGGAGGAGTTATTTGCGAGGACAGGAGGAGAGGATAAGGCCTAGGGATTATATAGGACGTTTTGATATTTAGTCCCGGTTGGTAACACCATCCGGGACTAAAGATAGTAGGGGCTCTGACGTTTTTTTAATTTGAACCGGGACTAAAAATGATCTTTAGTCCCGGTTGGTGTTACCAACCAGAACTAAATTAGATCATCAAGTCCCGATGAAGTTTTAAACCGGAACTAAAAACCATCTTTAGTTCCGGTTCCTATTTAAATCGGAACTAATGTGGTTTTTTGCCAACCCAGTAAAGATATTTTCTCCAACAATAATGGGCGCTCTGGTTCAATAATTTTGTTGGATGGGAGGGATAAGTGAAGAGGAAGAGATAATGATGAGTCACTGTAGTCAAAACTCTTGGCACAATCCTAGCCATTCAAAAGTGGCTGAAATTTGTGTGGGTTCCCTTAGAGAAAATGCTAGAGATCCATAAGGCATATGGAGCACGGGAATGCGCCCACTAAAAGTTCACATATTTATTTTCATAAATTCGAATGCGTCGGCAATAAGGCTGTGGCTCTATCTGGATGTGTTAGGTGCATAATCATACTGCTAGCTATATTGCATGCATATCACTACATATGTTCCCTGCTGTTTGCTAGACGCATTAAAAGAAAGTATAGAATTCCTTTTACGCACATACAGACATAGTGACATACTTGTTTTGGAGAGTCATATGTAGTTTTCCAATTTCAAAACAGAAAATGAGATTGCACAAATGCATGGCAAGTGATGAATTTAATATTTTTCATCGAGCAATCTTATGATAATTGCTTATGCCATTTCGGATCCTCCATTATGTACACTTCTTGTTTTACAGATTTACTCAATAAATGTGTCTCACTAATTCATATCTCTTCTACTCCTATCGGGATAGGTACTTGATTGTTATTGATGACGTATGGGAGATATTCACATGGAAAAGGATTAATTGTGCTTTGGTGGATAGTAATTGTGGAAGTAAAGTAATTACAACAACTCGTATTTCTGAAGTTGCTGAAGTAGTTGGTGATGTTTATAGGATGAAGCCGCTTTCCAGTGACAACTCCAAAAGGTTATTCAACAATAGAATATTTGGTATTGGTTCCAATGGACCAACTAATAATCAATCAGTTGAAGCAACTGAGAAGATCTTAAAGAAATGTAATGGCATGCCTTTGTCTATAGTTACAATGGCTAGTTTGTTGGTTAATAAACCAGTGGAGGACTGGATCGAAGTGTACGACTCTATTGGTTTTGGGCCTACAGGTCAAAATCAAGAAGTTGAGAACATGAGAAAGATATTATCTTTTAGCTACTACGAGTTGCCTTCATACCTAAAGACTTGTCTACTATACCTAAGCATATATCCAGAAGACCACCGGATCATGAAAAAACCATTGATATGGAAGTGGATAGCTGAAGGCTTTGTCCAAGAGGAACAACAAACCTGGTTATTTGAGGTTGGCGAGAGGTATTTCACCGAGCTTGTAAATAGAAGCATGATCCAACCAATTGAGATGTATGGCCGGGTGTTTGCCTGCCGCATCCATGACATGGTGCTAGATCTTATTCGCATCTTGGCAACCGAAGAGAACTTTGTAAAGATACTAGACAGGTTATATGATGTTCATAGCTCATCTTCACAAAGCAGCACTGCCCGTAGGGTAGCATGGCACAAGAGCTTGAACCAAGATAAATTCGATAACTTGACCACAGGGATGGCACAACTGAGGTCACTCAATGCCATTGAGTGTCCTATTAGTATGATTCCCCCGTTAGTGAGCTTTGAGATTCTACACGTGCTAGCACTGGAATCGTGTGGTGTCATAACAGGATATCACTTGAAGCATATTGGGAAGCTACAAAGGTTGCGTTACCTGGGACTTAGAGGCACACGAATTACCGAGCTCCCAAGTGAAATAGGGGATCTCATGCATCTGTTGGTATTGGATGTCAGGGGCACTAATGCACTGCCAGCAACTGTTGGAAAGCTAAGAAGGCTGATCCGACTATGCGTCGGAGGCACCATAGTTCCTTCTGGGGTAATTGGGAACCTGACCTCACTGCAAGATTTGCGTTTGGGCGAGATAACCGATGATGGCTGCCCAAACATTGCTGTGGATCTCTGCAAACTGACAGACCTGAGGAAGCTCACCATTGATTGGTTGCATCTAGATGAGGGCTCACTGAAGACACTGGTGGAGTCCCTATGCACCCTGCGCAAACTACAGAGCATCAAGATCAAGGGCAGTTGGAAGGTGTTGGAAGGTTGGGAAGGCTGGGAGCCCCCACGGCAGTTCCGCAAGTTCTACGTGGATGGTTCATTGCCTCGGCGGCCAACGTGGGTGGATTCCGTGCGTATTCCACACCTCTCCCATCTGAACCTTCACTTGCTGGCTGTGGAACAAAGGGACTTGGATGCCCTTGCGATGATGCCGGAGCTCCGCGTCCTCGAAGTGAACTCCGATTTGTCAATTTCATGGACAATCGCTGGTGGCGGTTTGTTCCCAAGCCTGAGATGCTTCTCCACGGACATAGAGATCATGTTTTTGCAGGGAGCAATGCCAATGCTCACGAATATTTCATTTGAGCCATCTGGTGATGATTCAGCCAATGACATTGGATTAAGGTACCTCCCTTAGCTGAATGATGTTTTTATACATCTGCTGTACTGCTCAGATCTGACGGCCAGGCAAGTGAAGGAAGCCATAGCGGTGTGGAGGCGTGTGATTAATTCTCACCCCAACCGTCCCATCACTCATGTGCAGATAGGTGACGAGGTACGATTGGTTTTTGTTAATACTCTATCCCATCATAAGGAATTTTAGCTCTATAATTGTATAGACAAAATTTCTTATATTATGCAACGTATGGAGTGGAAATAATGAAAAAATGATTGACGTTAATTCTCTTTCATGCCTCCTCTAAGTAATCATTACTTTTCTTAGGCTATGTTCTTTCTTTCTTCGTAACTTCTATAAGTAATATTTTTTTCGCGCTTGCTTCCTAGACAGATAAACGGTGTGTTTGTCAAAAAATTATATAGGAAAGTTGTTTTAAAAAATCATAATAATCTATTTTCAAGTTTCTATAGCTAATGCTTAATTAATCATACGCTAATAAGCCACTCCATTTTTTGTAAGGGGTAAAGGTTTAAACCTCTAGTATTGAACATAGCCTTGCTAATGTACTCTCCCTCAATTTCAGGCTTATAATCTGATTCCATCAGACGATAGCGATGACGAGGAGATTTCCGATCCAGGGAAAGATGACATAAATGATGAGGAGGAGGATCAAATTTCAGATCCAGAGGAAACCGACAGAAATTATGGCGAGGAGGAGATTTCAGCCACGGACCAGAAGGTGCAGCATTTGCGCACATCGTGCTAATTTAACACTGAATTCGTACAAAGTGTATATGTAACTAATTACTTCTAACTAATTACTGGTTTCTTTCCCCATCCAGCAGGACAATGGCGCAGCCGACGAGGCAAAGAGGAGGAGGCTATCTTGAACCAATTCGCTCTGCACTCTCGTTCCTTGATGCGTGCAGGTACACATTTAGGAAAGTTACAGTCATCTTCAAAGTTGTTATTGTTTTATGTAAAGTTCTCTTACCGACTGTACTGAACAGCGGCAGGAGGATAATTTCAGAGAAACTCTTTGGTGGAACCCTCCATGGCTTTATGACGAGGAAGAAGACCAGTATCCTCCGGCAGACTTGAGCGCCAGAACAGAACCGGCCGTTCGATGGATTGGCTAGTTTTTCCTAATAGTTTCCTGTGCCATTTTACTTAGCTTTTCTACATTGTTTTTATTTACAGATGGATTGTAATATATGCATCAGTGAGGCCTAATCATAGGCCCAGATAAAAACACAAACTGATGGTGTGTAATTGGTTGGAAGTGCAATGTTTGATGGAATGATCCCATCCAAGTTTTACGGTG
More
|
||||||||||
| CDS seq | ATGGAGTTGGCCACTGGAGCGATAGGTGCAGTCCTCCCCAAGTTGGGCAAGCTGCTAAAGGAGGAGTATGACCTGCATAATAGTGTGAAAGAGGGGATAAAGTTCCTGAAGGCCGAGCTCGAGTACATGCAACCTGCTCTTAAGAAGGTGTCGAATGTTCCACGAGACCAGCTTGACGAACAAGTCAAGATCTGGGCTAAGGATGTTAGAGAGCTATCGTACAGCATCGAGGACATCATTGACACCTTCATGCTACAGGTGGATGCACTTGAGCCACCCAAGAATAACATCTTCACATGGTTAATCAATAAATGCCACAAGTTGTCCCAGCTAATGATCCACCACAAAATAGGCAATGACATTAAAAGTGTTGAGAACCAAGTCAAGGAGGTGACCGAAAGATACGATAGATATAGGATTGATAGTATTGATGCTAAGCCTCCAATATTTATTGACCCTCGTATCTTGGGACTGTACGAGAAGGTCACCAATCTTGTTGGTGTTGACAAGGCCAGTGAAGATCTAATCAGGATGTTGTTTGTAGGAAGTGATGCATCCAAGATGCTTAAGATTGTATCTGTTCTTGGATTAGGAGGTTTGGGCAAGACAACTCTTGCAAAATTCGTGTTTGACAATCTGAAAGTGCAATTTCAGTGTTTTGCTTTTATTTCGGTTGGTCAGAAACCTGCTGACATCAAGAACGTTCTCAAGCACATCCTGATTGGACTTGACAAACACAAGTACATGGAACTCGATACATCCCAACTAAGTGAAAGTTATTTAACTGATGAGGTCCGTGAATATCTGGATAACAAGAGGTACTTGATTGTTATTGATGACGTATGGGAGATATTCACATGGAAAAGGATTAATTGTGCTTTGGTGGATAGTAATTGTGGAAGTAAAGTAATTACAACAACTCGTATTTCTGAAGTTGCTGAAGTAGTTGGTGATGTTTATAGGATGAAGCCGCTTTCCAGTGACAACTCCAAAAGGTTATTCAACAATAGAATATTTGGTATTGGTTCCAATGGACCAACTAATAATCAATCAGTTGAAGCAACTGAGAAGATCTTAAAGAAATGTAATGGCATGCCTTTGTCTATAGTTACAATGGCTAGTTTGTTGGTTAATAAACCAGTGGAGGACTGGATCGAAGTGTACGACTCTATTGGTTTTGGGCCTACAGGTCAAAATCAAGAAGTTGAGAACATGAGAAAGATATTATCTTTTAGCTACTACGAGTTGCCTTCATACCTAAAGACTTGTCTACTATACCTAAGCATATATCCAGAAGACCACCGGATCATGAAAAAACCATTGATATGGAAGTGGATAGCTGAAGGCTTTGTCCAAGAGGAACAACAAACCTGGTTATTTGAGGTTGGCGAGAGGTATTTCACCGAGCTTGTAAATAGAAGCATGATCCAACCAATTGAGATGTATGGCCGGGTGTTTGCCTGCCGCATCCATGACATGGTGCTAGATCTTATTCGCATCTTGGCAACCGAAGAGAACTTTGTAAAGATACTAGACAGGTTATATGATGTTCATAGCTCATCTTCACAAAGCAGCACTGCCCGTAGGGTAGCATGGCACAAGAGCTTGAACCAAGATAAATTCGATAACTTGACCACAGGGATGGCACAACTGAGGTCACTCAATGCCATTGAGTGTCCTATTAGTATGATTCCCCCGTTAGTGAGCTTTGAGATTCTACACGTGCTAGCACTGGAATCGTGTGGTGTCATAACAGGATATCACTTGAAGCATATTGGGAAGCTACAAAGGTTGCGTTACCTGGGACTTAGAGGCACACGAATTACCGAGCTCCCAAGTGAAATAGGGGATCTCATGCATCTGTTGGTATTGGATGTCAGGGGCACTAATGCACTGCCAGCAACTGTTGGAAAGCTAAGAAGGCTGATCCGACTATGCGTCGGAGGCACCATAGTTCCTTCTGGGGTAATTGGGAACCTGACCTCACTGCAAGATTTGCGTTTGGGCGAGATAACCGATGATGGCTGCCCAAACATTGCTGTGGATCTCTGCAAACTGACAGACCTGAGGAAGCTCACCATTGATTGGTTGCATCTAGATGAGGGCTCACTGAAGACACTGGTGGAGTCCCTATGCACCCTGCGCAAACTACAGAGCATCAAGATCAAGGGCAGTTGGAAGGTGTTGGAAGGTTGGGAAGGCTGGGAGCCCCCACGGCAGTTCCGCAAGTTCTACGTGGATGGTTCATTGCCTCGGCGGCCAACGTGGGTGGATTCCGTGCGTATTCCACACCTCTCCCATCTGAACCTTCACTTGCTGGCTGTGGAACAAAGGGACTTGGATGCCCTTGCGATGATGCCGGAGCTCCGCGTCCTCGAAGTGAACTCCGATTTGTCAATTTCATGGACAATCGCTGGTGGCGGTTTGTTCCCAAGCCTGAGATGCTTCTCCACGGACATAGAGATCATGTTTTTGCAGGGAGCAATGCCAATGCTCACGAATATTTCATTTGAGCCATCTGGTGATGATTCAGCCAATGACATTGGATTAAGGTACCTCCCTTAG
More
|
||||||||||
| Protein seq | MELATGAIGAVLPKLGKLLKEEYDLHNSVKEGIKFLKAELEYMQPALKKVSNVPRDQLDEQVKIWAKDVRELSYSIEDIIDTFMLQVDALEPPKNNIFTWLINKCHKLSQLMIHHKIGNDIKSVENQVKEVTERYDRYRIDSIDAKPPIFIDPRILGLYEKVTNLVGVDKASEDLIRMLFVGSDASKMLKIVSVLGLGGLGKTTLAKFVFDNLKVQFQCFAFISVGQKPADIKNVLKHILIGLDKHKYMELDTSQLSESYLTDEVREYLDNKRYLIVIDDVWEIFTWKRINCALVDSNCGSKVITTTRISEVAEVVGDVYRMKPLSSDNSKRLFNNRIFGIGSNGPTNNQSVEATEKILKKCNGMPLSIVTMASLLVNKPVEDWIEVYDSIGFGPTGQNQEVENMRKILSFSYYELPSYLKTCLLYLSIYPEDHRIMKKPLIWKWIAEGFVQEEQQTWLFEVGERYFTELVNRSMIQPIEMYGRVFACRIHDMVLDLIRILATEENFVKILDRLYDVHSSSSQSSTARRVAWHKSLNQDKFDNLTTGMAQLRSLNAIECPISMIPPLVSFEILHVLALESCGVITGYHLKHIGKLQRLRYLGLRGTRITELPSEIGDLMHLLVLDVRGTNALPATVGKLRRLIRLCVGGTIVPSGVIGNLTSLQDLRLGEITDDGCPNIAVDLCKLTDLRKLTIDWLHLDEGSLKTLVESLCTLRKLQSIKIKGSWKVLEGWEGWEPPRQFRKFYVDGSLPRRPTWVDSVRIPHLSHLNLHLLAVEQRDLDALAMMPELRVLEVNSDLSISWTIAGGGLFPSLRCFSTDIEIMFLQGAMPMLTNISFEPSGDDSANDIGLRYLP |
||||||||||
| Function | Disease resistance protein RGA5 [UniProtKB/Swiss-Prot:Q2R8L1] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNip_11g0590700 | OsNip_11t0590700-01 | Chr11 | 22427774 | 22435407 | + | RAP2018-11-26 | ||
| CDS seq | ATGGAGTTGGCCACTGGAGCGATAGGTGCAGTCCTCCCCAAGTTGGGCAAGCTGCTAAAGGAGGAGTATGACCTGCATAATAGTGTGAAAGAGGGGATAAAGTTCCTGAAGGCCGAGCTCGAGTACATGCAACCTGCTCTTAAGAAGGTGTCGAATGTTCCACGAGACCAGCTTGACGAACAAGTCAAGATCTGGGCTAAGGATGTTAGAGAGCTATCGTACAGCATCGAGGACATCATTGACACCTTCATGCTACAGGTGGATGCACTTGAGCCACCCAAGAATAACATCTTCACATGGTTAATCAATAAATGCCACAAGTTGTCCCAGCTAATGATCCACCACAAAATAGGCAATGACATTAAAAGTGTTGAGAACCAAGTCAAGGAGGTGACCGAAAGATACGATAGATATAGGATTGATAGTATTGATGCTAAGCCTCCAATATTTATTGACCCTCGTATCTTGGGACTGTACGAGAAGGTCACCAATCTTGTTGGTGTTGACAAGGCCAGTGAAGATCTAATCAGGATGTTGTTTGTAGGAAGTGATGCATCCAAGATGCTTAAGATTGTATCTGTTCTTGGATTAGGAGGTTTGGGCAAGACAACTCTTGCAAAATTCGTGTTTGACAATCTGAAAGTGCAATTTCAGTGTTTTGCTTTTATTTCGGTTGGTCAGAAACCTGCTGACATCAAGAACGTTCTCAAGCACATCCTGATTGGACTTGACAAACACAAGTACATGGAACTCGATACATCCCAACTAAGTGAAAGTTATTTAACTGATGAGGTCCGTGAATATCTGGATAACAAGAGGTACTTGATTGTTATTGATGACGTATGGGAGATATTCACATGGAAAAGGATTAATTGTGCTTTGGTGGATAGTAATTGTGGAAGTAAAGTAATTACAACAACTCGTATTTCTGAAGTTGCTGAAGTAGTTGGTGATGTTTATAGGATGAAGCCGCTTTCCAGTGACAACTCCAAAAGGTTATTCAACAATAGAATATTTGGTATTGGTTCCAATGGACCAACTAATAATCAATCAGTTGAAGCAACTGAGAAGATCTTAAAGAAATGTAATGGCATGCCTTTGTCTATAGTTACAATGGCTAGTTTGTTGGTTAATAAACCAGTGGAGGACTGGATCGAAGTGTACGACTCTATTGGTTTTGGGCCTACAGGTCAAAATCAAGAAGTTGAGAACATGAGAAAGATATTATCTTTTAGCTACTACGAGTTGCCTTCATACCTAAAGACTTGTCTACTATACCTAAGCATATATCCAGAAGACCACCGGATCATGAAAAAACCATTGATATGGAAGTGGATAGCTGAAGGCTTTGTCCAAGAGGAACAACAAACCTGGTTATTTGAGGTTGGCGAGAGGTATTTCACCGAGCTTGTAAATAGAAGCATGATCCAACCAATTGAGATGTATGGCCGGGTGTTTGCCTGCCGCATCCATGACATGGTGCTAGATCTTATTCGCATCTTGGCAACCGAAGAGAACTTTGTAAAGATACTAGACAGGTTATATGATGTTCATAGCTCATCTTCACAAAGCAGCACTGCCCGTAGGGTAGCATGGCACAAGAGCTTGAACCAAGATAAATTCGATAACTTGACCACAGGGATGGCACAACTGAGGTCACTCAATGCCATTGAGTGTCCTATTAGTATGATTCCCCCGTTAGTGAGCTTTGAGATTCTACACGTGCTAGCACTGGAATCGTGTGGTGTCATAACAGGATATCACTTGAAGCATATTGGGAAGCTACAAAGGTTGCGTTACCTGGGACTTAGAGGCACACGAATTACCGAGCTCCCAAGTGAAATAGGGGATCTCATGCATCTGTTGGTATTGGATGTCAGGGGCACTAATGCACTGCCAGCAACTGTTGGAAAGCTAAGAAGGCTGATCCGACTATGCGTCGGAGGCACCATAGTTCCTTCTGGGGTAATTGGGAACCTGACCTCACTGCAAGATTTGCGTTTGGGCGAGATAACCGATGATGGCTGCCCAAACATTGCTGTGGATCTCTGCAAACTGACAGACCTGAGGAAGCTCACCATTGATTGGTTGCATCTAGATGAGGGCTCACTGAAGACACTGGTGGAGTCCCTATGCACCCTGCGCAAACTACAGAGCATCAAGATCAAGGGCAGTTGGAAGGTGTTGGAAGGTTGGGAAGGCTGGGAGCCCCCACGGCAGTTCCGCAAGTTCTACGTGGATGGTTCATTGCCTCGGCGGCCAACGTGGGTGGATTCCGTGCGTATTCCACACCTCTCCCATCTGAACCTTCACTTGCTGGCTGTGGAACAAAGGGACTTGGATGCCCTTGCGATGATGCCGGAGCTCCGCGTCCTCGAAGTGAACTCCGATTTGTCAATTTCATGGACAATCGCTGGTGGCGGTTTGTTCCCAAGCCTGAGATGCTTCTCCACGGACATAGAGATCATGTTTTTGCAGGGAGCAATGCCAATGCTCACGAATATTTCATTTGAGCCATCTGGTGATGATTCAGCCAATGACATTGGATTAAGGTACCTCCCTTAG
More
|
|||||||
| Protein seq | MELATGAIGAVLPKLGKLLKEEYDLHNSVKEGIKFLKAELEYMQPALKKVSNVPRDQLDEQVKIWAKDVRELSYSIEDIIDTFMLQVDALEPPKNNIFTWLINKCHKLSQLMIHHKIGNDIKSVENQVKEVTERYDRYRIDSIDAKPPIFIDPRILGLYEKVTNLVGVDKASEDLIRMLFVGSDASKMLKIVSVLGLGGLGKTTLAKFVFDNLKVQFQCFAFISVGQKPADIKNVLKHILIGLDKHKYMELDTSQLSESYLTDEVREYLDNKRYLIVIDDVWEIFTWKRINCALVDSNCGSKVITTTRISEVAEVVGDVYRMKPLSSDNSKRLFNNRIFGIGSNGPTNNQSVEATEKILKKCNGMPLSIVTMASLLVNKPVEDWIEVYDSIGFGPTGQNQEVENMRKILSFSYYELPSYLKTCLLYLSIYPEDHRIMKKPLIWKWIAEGFVQEEQQTWLFEVGERYFTELVNRSMIQPIEMYGRVFACRIHDMVLDLIRILATEENFVKILDRLYDVHSSSSQSSTARRVAWHKSLNQDKFDNLTTGMAQLRSLNAIECPISMIPPLVSFEILHVLALESCGVITGYHLKHIGKLQRLRYLGLRGTRITELPSEIGDLMHLLVLDVRGTNALPATVGKLRRLIRLCVGGTIVPSGVIGNLTSLQDLRLGEITDDGCPNIAVDLCKLTDLRKLTIDWLHLDEGSLKTLVESLCTLRKLQSIKIKGSWKVLEGWEGWEPPRQFRKFYVDGSLPRRPTWVDSVRIPHLSHLNLHLLAVEQRDLDALAMMPELRVLEVNSDLSISWTIAGGGLFPSLRCFSTDIEIMFLQGAMPMLTNISFEPSGDDSANDIGLRYLP
More
|
|||||||
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNip_11g0590700 | OsNip_11t0590700-02 | Chr11 | 22427768 | 22435394 | + | IsoSeq | ||
| CDS seq | ATGCACCCTGCGCAAACTACAGAGCATCAAGATCAAGGGCAGTTGGAAGGTGTTGGAAGGTTGGGAAGGCTGGGAGCCCCCACGGCAGTTCCGCAAGTTCTACGTGGATGGTTCATTGCCTCGGCGGCCAACGTGGGTGGATTCCGTGCGTATTCCACACCTCTCCCATCTGAACCTTCACTTGCTGGCTGTGGAACAAAGGGACTTGGATGCCCTTGCGATGATGCCGGAGCTCCGCGTCCTCGAAGTGAACTCCGATTTGTCAATTTCATGGACAATCGCTGGTGGCGGTTTGTTCCCAAGCCTGAGATGCTTCTCCACGGACATAGAGATCATGTTTTTGCAGGGAGCAATGCCAATGCTCACGAATATTTC
More
|
|||||||
| Protein seq | MHPAQTTEHQDQGQLEGVGRLGRLGAPTAVPQVLRGWFIASAANVGGFRAYSTPLPSEPSLAGCGTKGLGCPCDDAGAPRPRSELRFVNFMDNRWWRFVPKPEMLLHGHRDHVFAGSNANAHEYF |
|||||||
| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
| A3 | Chr11 | 22434822 | 22434929 | + | OsNip_11t0590700-01 | OsNip_11t0590700-01,OsNip_11t0590700-02 | All |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.000000 | 0.133840 | 0.418338 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os11g37860 | RBH | 0.000000 | 0.089641 | 0.107237 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os11g0590700 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_11g0018850 | RBH | 0.0 | 0.0 | 0.0 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_11g0018940 | RBH | 0.0 | 2.536103 | 0.116736 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_11g0018730 | RBH | 0.0 | 3.846479 | 1.008017 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_11g0018480 | RBH | 0.0 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_11g0018770 | RBH | 0.0 | 0.0 | 0.0 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_11G0344600 | RBH | 0.028829 | 0.8824205 | 0.0846545 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_11g0019340 | RBH | 0.0 | 0.0 | 0.055300 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_11G0357600 | RBH | 0.057693 | 8.078449 | 0.017472 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_11g0019120 | RBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_11g0019280 | RBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_11g0018750 | RBH | 0.0 | 4.188165 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_11g0018470 | SBH | 0.619366 | 0.0 | 0.136617 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_11g0018620 | RBH | 0.0 | 0.535392 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_11G018780 | RBH | 0.0 | 0.0 | 0.0 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_11g0019000 | SBH | 0.085491 | 1.135887 | 0.549001 |
