Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsGoSa_11g0018750 | OGI:11065320 | 16/16 | GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | Chr11:25162447-25164156 | ||||||||
| Gene Symbol | XA39, Xa39 | ||||||||||
| DNA seq | atggagttcgccactggggcaataggcactctcctccccaagctaggcaaactacttagtgaggagtataacttgcagaaaaatgtgaaggagggaatcaagttcctcaagattgagctcgagagcatgcaacttgcccttaagaagatctcaaatgtgccactagaccagcttgatgagcaagtcaagatctgggctagggacgttagggagttgtcctacagcatcgaggacatcattgataccttcatgctacgggcagatgaccttgatcaatccaagaaaaacatattcacatggttaatcaataagtgccacaaattgtctgaagtaaagatccagcataaaatagccaaggacatcaaggatgtcaagatccaagtcaaggcagtgatggaacgacgggataggtataggcttgatggtgttgttgctaatcctccaacgattgtcgatcctcgcatattggcactttacgagaatgttacaaatcttgttggcattgacaagacaagtgatgatctaatcaagaggttgtttgagggggacgatgagtccaagaagaagcttaagttaatatccatagttggaattggaggattgggtaaaacaacccttgcaaaggcagtgtttgagagtcttaaaatgcaatttgagtgtgctgctttgattcccgtgggtcagaaacctgacatcaagaaagttttcaaggacatccttattgaacttaacaagtacaactatatgaaattcgatacaatggcactaagtgaaagatatctaattgatgagctccgagaatatcttcacaagaggaggtatgtactcaatgcccaccaaattgatcgattgttaattaaccataataagtgttttttgaatgattttttccattagaatgatttcaatattagctattggttgtgatagttgagattaagtaaatctgcattaggtatgtatatcattaatgtttcatgtgaaactaaaccccacaatcaactcgccatcacagtcatgcctcgctactatgggtctaaatctctttgccacggagattaaattattgtatcaataatgatgggtttaacccctttgtcaagtaacacgttgatgattttcttatgcctcttggatctctaatgtttgtaggcttcttgattatgcattgattgttttactaatgaatatccgttgtattccaatgcacataggtatttgattgttattgatgacatatgggagacatcaacatggaaaatgattaaatgtgctttagttgatagtaattgtggaagtagagtaatcacaacaactcgtatttctcaagttgctgaagaagttggtaatatttacctaatggaaccactttctgctgacaactcaaaaaagttattctacaatagaatgtttggtgctcaatgcaaaggtcgagagggtaatcaacaagccgaggcaactaaaatgattttacaaaaatgtggtggtgtaccattgtctataattacaatagcttgtttgttagttaataaaccagtggaagactggtccaaagtatacaactctatcggttttgggcttgaagatcgaaatgaagcagtccaaaacacaaggaagatattgtcttatagctactatgaattgccttcacatctgaagacttgtctgttgcacctaagcatatttccagaagattgttggattgaataa
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| CDS seq | atggagttcgccactggggcaataggcactctcctccccaagctaggcaaactacttagtgaggagtataacttgcagaaaaatgtgaaggagggaatcaagttcctcaagattgagctcgagagcatgcaacttgcccttaagaagatctcaaatgtgccactagaccagcttgatgagcaagtcaagatctgggctagggacgttagggagttgtcctacagcatcgaggacatcattgataccttcatgctacgggcagatgaccttgatcaatccaagaaaaacatattcacatggttaatcaataagtgccacaaattgtctgaagtaaagatccagcataaaatagccaaggacatcaaggatgtcaagatccaagtcaaggcagtgatggaacgacgggataggtataggcttgatggtgttgttgctaatcctccaacgattgtcgatcctcgcatattggcactttacgagaatgttacaaatcttgttggcattgacaagacaagtgatgatctaatcaagaggttgtttgagggggacgatgagtccaagaagaagcttaagttaatatccatagttggaattggaggattgggtaaaacaacccttgcaaaggcagtgtttgagagtcttaaaatgcaatttgagtgtgctgctttgattcccgtgggtcagaaacctgacatcaagaaagttttcaaggacatccttattgaacttaacaagtacaactatatgaaattcgatacaatggcactaagtgaaagatatctaattgatgagctccgagaatatcttcacaagaggaggtatttgattgttattgatgacatatgggagacatcaacatggaaaatgattaaatgtgctttagttgatagtaattgtggaagtagagtaatcacaacaactcgtatttctcaagttgctgaagaagttggtaatatttacctaatggaaccactttctgctgacaactcaaaaaagttattctacaatagaatgtttggtgctcaatgcaaaggtcgagagggtaatcaacaagccgaggcaactaaaatgattttacaaaaatgtggtggtgtaccattgtctataattacaatagcttgtttgttagttaataaaccagtggaagactggtccaaagtatacaactctatcggttttgggcttgaagatcgaaatgaagcagtccaaaacacaaggaagatattgtcttatagctactatgaattgccttcacatctgaagacttgtctgttgcacctaagcatatttccagaagattgttggattgaataa
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| Protein seq | MEFATGAIGTLLPKLGKLLSEEYNLQKNVKEGIKFLKIELESMQLALKKISNVPLDQLDEQVKIWARDVRELSYSIEDIIDTFMLRADDLDQSKKNIFTWLINKCHKLSEVKIQHKIAKDIKDVKIQVKAVMERRDRYRLDGVVANPPTIVDPRILALYENVTNLVGIDKTSDDLIKRLFEGDDESKKKLKLISIVGIGGLGKTTLAKAVFESLKMQFECAALIPVGQKPDIKKVFKDILIELNKYNYMKFDTMALSERYLIDELREYLHKRRYLIVIDDIWETSTWKMIKCALVDSNCGSRVITTTRISQVAEEVGNIYLMEPLSADNSKKLFYNRMFGAQCKGREGNQQAEATKMILQKCGGVPLSIITIACLLVNKPVEDWSKVYNSIGFGLEDRNEAVQNTRKILSYSYYELPSHLKTCLLHLSIFPEDCWIE |
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| Function | Disease resistance protein RGA5 [UniProtKB/Swiss-Prot:F7J0N2] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsGoSa_11g0018750 | OsGoSa_11g0018750.01 | Chr11 | 25162447 | 25164156 | + | NAM | ||
| CDS seq | atggagttcgccactggggcaataggcactctcctccccaagctaggcaaactacttagtgaggagtataacttgcagaaaaatgtgaaggagggaatcaagttcctcaagattgagctcgagagcatgcaacttgcccttaagaagatctcaaatgtgccactagaccagcttgatgagcaagtcaagatctgggctagggacgttagggagttgtcctacagcatcgaggacatcattgataccttcatgctacgggcagatgaccttgatcaatccaagaaaaacatattcacatggttaatcaataagtgccacaaattgtctgaagtaaagatccagcataaaatagccaaggacatcaaggatgtcaagatccaagtcaaggcagtgatggaacgacgggataggtataggcttgatggtgttgttgctaatcctccaacgattgtcgatcctcgcatattggcactttacgagaatgttacaaatcttgttggcattgacaagacaagtgatgatctaatcaagaggttgtttgagggggacgatgagtccaagaagaagcttaagttaatatccatagttggaattggaggattgggtaaaacaacccttgcaaaggcagtgtttgagagtcttaaaatgcaatttgagtgtgctgctttgattcccgtgggtcagaaacctgacatcaagaaagttttcaaggacatccttattgaacttaacaagtacaactatatgaaattcgatacaatggcactaagtgaaagatatctaattgatgagctccgagaatatcttcacaagaggaggtatttgattgttattgatgacatatgggagacatcaacatggaaaatgattaaatgtgctttagttgatagtaattgtggaagtagagtaatcacaacaactcgtatttctcaagttgctgaagaagttggtaatatttacctaatggaaccactttctgctgacaactcaaaaaagttattctacaatagaatgtttggtgctcaatgcaaaggtcgagagggtaatcaacaagccgaggcaactaaaatgattttacaaaaatgtggtggtgtaccattgtctataattacaatagcttgtttgttagttaataaaccagtggaagactggtccaaagtatacaactctatcggttttgggcttgaagatcgaaatgaagcagtccaaaacacaaggaagatattgtcttatagctactatgaattgccttcacatctgaagacttgtctgttgcacctaagcatatttccagaagattgttggattgaataa
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| Protein seq | MEFATGAIGTLLPKLGKLLSEEYNLQKNVKEGIKFLKIELESMQLALKKISNVPLDQLDEQVKIWARDVRELSYSIEDIIDTFMLRADDLDQSKKNIFTWLINKCHKLSEVKIQHKIAKDIKDVKIQVKAVMERRDRYRLDGVVANPPTIVDPRILALYENVTNLVGIDKTSDDLIKRLFEGDDESKKKLKLISIVGIGGLGKTTLAKAVFESLKMQFECAALIPVGQKPDIKKVFKDILIELNKYNYMKFDTMALSERYLIDELREYLHKRRYLIVIDDIWETSTWKMIKCALVDSNCGSRVITTTRISQVAEEVGNIYLMEPLSADNSKKLFYNRMFGAQCKGREGNQQAEATKMILQKCGGVPLSIITIACLLVNKPVEDWSKVYNSIGFGLEDRNEAVQNTRKILSYSYYELPSHLKTCLLHLSIFPEDCWIE
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 4.188165 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_11g0590700 | RBH | 0.000000 | 0.133840 | 0.418338 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os11g37870 | RBH | 0.186851 | 0.0 | 0.195428 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os11g0590700 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_11g0018860 | SBH | 0.033359 | 2.025336 | 0.335204 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_11g0018950 | RBH | 0.000000 | 0.810689 | 0.000000 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_11g0018740 | RBH | 0.0 | 6.808437 | 0.239879 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_11g0018490 | RBH | 0.0 | 0.021229 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_11g0018780 | RBH | 1.520858 | 2.421318 | 1.408740 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_11G0344600 | RBH | 0.028829 | 0.8824205 | 0.0846545 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_11g0019350 | RBH | 0.0 | 0.000000 | 0.134400 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_11G0358000 | SBH | 0.4338155 | 4.4828455 | 0.036291 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_11g0019140 | RBH | 0.137511 | 0.276715 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_11g0019220 | SBH | 0.039728 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_11g0018760 | RBH | 0.556514 | 0.000000 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_11g0018470 | SBH | 0.619366 | 0.0 | 0.136617 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_11g0018630 | RBH | 0.000000 | 2.546901 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_11G018790 | RBH | 0.000000 | 0.000000 | 0.0 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_11g0019010 | RBH | 0.0 | 0.0 | 0.000000 |
