Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| LOC_Os11g46130 | OGI:11082190 | 8/16 | Nipponbare | IRGSP 1.0 | MSU | Chr11:27920064-27921017 | ||||||||
| Gene Symbol | RYMV3, OsRYMV3, - | ||||||||||
| DNA seq | ATGCGGAGAGGGAGCATAGATGTCGCGACAGGGGCGTTGGGCAGCGTCCTGGCCAAGCTGGGGGTGCTGCTCCAGGATGGATTCAAGCATAATCTGCCGAAGAGCGCAAAGCATGACATCCACTCTCTCCGGATGGACCTACAGATTATGTACTCAGTCCTCCGCGATGTGGTAGATTCGCGCGCGGAGCAGCAGGGGCACAACAAGCTGTGGGCACTGGAGCTGCGGGAGCTCTCGTACGACGTGGAGGATGCAGTCGACACCATCCTGGTACGCCTGGGCGGCCTTGAGTCGTCCACCGAAGCAGCAAGCAGCACGGGATCGAGCTGGCTCATTAAGATTACCAAGAGGGCCACAACCCATAAGGTCTTTGACGAGATCAAAGACATCAGGTTACGCGCCAAGGAGGTAAATGAATGGCGTGATCGGTACATGATAGATGACAGTCTACATAAGCCTCGAGTTTCTGCTATCTACGACCCTCCTCGCCTGCCTGCAGATCTGTCCGTCGACCAGCACAGCCTAGTTGGGATTGACCAGGCAGCGGCCGAGCTAATAGAGATGTTGGCATTGGAGGGTGGTGCGTTCGAGCGGCGATTGAAGACAGTGTCCATAGTTGGAATGGGAGGACTAGGCAAGACAACTCTTGCCAAACTAGTCTACAGCATGCTTAAGGATCGGGACCAGTTTCAATGTGGAGCTTTTGTTTCGGTGAGTCAGTGTCCTAATAACAGGAAGAAAGTTTTCTGGGAAATGCTCTACCAACTGGATGGAAAAAATTATAACAACGTCCAGTACAATGCAGATAACAATGTAGACCAACTCATCCATGCAAGCCGAGACTCCCTTCAGAACAAGAGGTACATATATACCACATCCACCATTATTGCCACACGCTTCATGAGTATTCTTGGTTTTCAAACCATTAATTGGCGGTTGCTTTTTAGACTTTAG
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| CDS seq | ATGCGGAGAGGGAGCATAGATGTCGCGACAGGGGCGTTGGGCAGCGTCCTGGCCAAGCTGGGGGTGCTGCTCCAGGATGGATTCAAGCATAATCTGCCGAAGAGCGCAAAGCATGACATCCACTCTCTCCGGATGGACCTACAGATTATGTACTCAGTCCTCCGCGATGTGGTAGATTCGCGCGCGGAGCAGCAGGGGCACAACAAGCTGTGGGCACTGGAGCTGCGGGAGCTCTCGTACGACGTGGAGGATGCAGTCGACACCATCCTGGTACGCCTGGGCGGCCTTGAGTCGTCCACCGAAGCAGCAAGCAGCACGGGATCGAGCTGGCTCATTAAGATTACCAAGAGGGCCACAACCCATAAGGTCTTTGACGAGATCAAAGACATCAGGTTACGCGCCAAGGAGGTAAATGAATGGCGTGATCGGTACATGATAGATGACAGTCTACATAAGCCTCGAGTTTCTGCTATCTACGACCCTCCTCGCCTGCCTGCAGATCTGTCCGTCGACCAGCACAGCCTAGTTGGGATTGACCAGGCAGCGGCCGAGCTAATAGAGATGTTGGCATTGGAGGGTGGTGCGTTCGAGCGGCGATTGAAGACAGTGTCCATAGTTGGAATGGGAGGACTAGGCAAGACAACTCTTGCCAAACTAGTCTACAGCATGCTTAAGGATCGGGACCAGTTTCAATGTGGAGCTTTTGTTTCGGTGAGTCAGTGTCCTAATAACAGGAAGAAAGTTTTCTGGGAAATGCTCTACCAACTGGATGGAAAAAATTATAACAACGTCCAGTACAATGCAGATAACAATGTAGACCAACTCATCCATGCAAGCCGAGACTCCCTTCAGAACAAGAGGTACATATATACCACATCCACCATTATTGCCACACGCTTCATGAGTATTCTTGGTTTTCAAACCATTAATTGGCGGTTGCTTTTTAGACTTTAG
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| Protein seq | MRRGSIDVATGALGSVLAKLGVLLQDGFKHNLPKSAKHDIHSLRMDLQIMYSVLRDVVDSRAEQQGHNKLWALELRELSYDVEDAVDTILVRLGGLESSTEAASSTGSSWLIKITKRATTHKVFDEIKDIRLRAKEVNEWRDRYMIDDSLHKPRVSAIYDPPRLPADLSVDQHSLVGIDQAAAELIEMLALEGGAFERRLKTVSIVGMGGLGKTTLAKLVYSMLKDRDQFQCGAFVSVSQCPNNRKKVFWEMLYQLDGKNYNNVQYNADNNVDQLIHASRDSLQNKRYIYTTSTIIATRFMSILGFQTINWRLLFRL |
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| Function | Disease resistance protein RGA5 [UniProtKB/Swiss-Prot:F7J0N2] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| LOC_Os11g46130 | LOC_Os11g46130.1 | Chr11 | 27920064 | 27921017 | + | MSU_osa1r7 | ||
| CDS seq | ATGCGGAGAGGGAGCATAGATGTCGCGACAGGGGCGTTGGGCAGCGTCCTGGCCAAGCTGGGGGTGCTGCTCCAGGATGGATTCAAGCATAATCTGCCGAAGAGCGCAAAGCATGACATCCACTCTCTCCGGATGGACCTACAGATTATGTACTCAGTCCTCCGCGATGTGGTAGATTCGCGCGCGGAGCAGCAGGGGCACAACAAGCTGTGGGCACTGGAGCTGCGGGAGCTCTCGTACGACGTGGAGGATGCAGTCGACACCATCCTGGTACGCCTGGGCGGCCTTGAGTCGTCCACCGAAGCAGCAAGCAGCACGGGATCGAGCTGGCTCATTAAGATTACCAAGAGGGCCACAACCCATAAGGTCTTTGACGAGATCAAAGACATCAGGTTACGCGCCAAGGAGGTAAATGAATGGCGTGATCGGTACATGATAGATGACAGTCTACATAAGCCTCGAGTTTCTGCTATCTACGACCCTCCTCGCCTGCCTGCAGATCTGTCCGTCGACCAGCACAGCCTAGTTGGGATTGACCAGGCAGCGGCCGAGCTAATAGAGATGTTGGCATTGGAGGGTGGTGCGTTCGAGCGGCGATTGAAGACAGTGTCCATAGTTGGAATGGGAGGACTAGGCAAGACAACTCTTGCCAAACTAGTCTACAGCATGCTTAAGGATCGGGACCAGTTTCAATGTGGAGCTTTTGTTTCGGTGAGTCAGTGTCCTAATAACAGGAAGAAAGTTTTCTGGGAAATGCTCTACCAACTGGATGGAAAAAATTATAACAACGTCCAGTACAATGCAGATAACAATGTAGACCAACTCATCCATGCAAGCCGAGACTCCCTTCAGAACAAGAGGTACATATATACCACATCCACCATTATTGCCACACGCTTCATGAGTATTCTTGGTTTTCAAACCATTAATTGGCGGTTGCTTTTTAGACTTTAG
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| Protein seq | MRRGSIDVATGALGSVLAKLGVLLQDGFKHNLPKSAKHDIHSLRMDLQIMYSVLRDVVDSRAEQQGHNKLWALELRELSYDVEDAVDTILVRLGGLESSTEAASSTGSSWLIKITKRATTHKVFDEIKDIRLRAKEVNEWRDRYMIDDSLHKPRVSAIYDPPRLPADLSVDQHSLVGIDQAAAELIEMLALEGGAFERRLKTVSIVGMGGLGKTTLAKLVYSMLKDRDQFQCGAFVSVSQCPNNRKKVFWEMLYQLDGKNYNNVQYNADNNVDQLIHASRDSLQNKRYIYTTSTIIATRFMSILGFQTINWRLLFRL
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | 0.0 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_11g0657900 | SBH | 0.207521 | 0.000000 | 0.000000 |
| Nipponbare | IRGSP 1.0 | MSU | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | RAP-db | Os11g0657900 | SBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_11g0024470 | SBH | 0.0 | 0.0 | 0.0 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_11g0024330 | RBH | 0.0 | 1.243308 | 0.0 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_11g0024140 | SBH | 0.0 | 1.744805 | 0.0 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_11g0023810 | SBH | 0.0 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_11g0024530 | SBH | 0.000000 | 0.000000 | 1.543944 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_11G0442100 | SBH | 0.0366395 | 3.949619 | 0.2105595 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_11g0025020 | SBH | 0.0 | 0.0 | 0.0 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_11G0439600 | SBH | 0 | 0 | 0.0033165 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_11g0024520 | RBH | 0.0 | 0.050314 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_11g0024540 | RBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_11g0024300 | SBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_11g0016680 | SBH | 0.351766 | 0.0 | 0.194610 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_11g0024440 | SBH | 0.0 | 0.537527 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_11G024420 | SBH | 0.0 | 0.0 | 0.0 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_11g0017140 | SBH | 0.821338 | 5.267231 | 1.813038 |
