Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLiXu_11g0016680 | OGI:11061020 | 16/16 | LIU XU | Os125827RS1 | Gramene(+IsoSeq) | Chr11:23536149-23539122 | ||||||||
| Gene Symbol | RYMV3, OsRYMV3 | ||||||||||
| DNA seq | atggagatcgtgacgggagcgattagcaccctcctgcccaagctgggagagctgctgagggaggagtaccagctgcagaagagcgtcaggggcgagatcatgttcctcaaagctgagttggagagcatggaggcagcgctgcttgatgtctccgaggcaccaattgatcagccgcctaataatcaagtcaagctttgggcgaggaacgtcagggagctgtcctacgacatcgaggacagcattgacaagttcatggtgcgcattgacacccatgccgcacctcacaagctgcatagcttcagggacttcattgatagaagcctagacctgctgacaaaggccaagatccgccattccatcggcaccgatatcaaagacatcaaaagccgtattaaggagattagtgagcgtcgtgatagatacaaggttgacaatgttgttaccgtaccatttagtccaactgttgatagccttcgcctatcagctttgtacaagaagatgacagaactcgttggcatcgaagagaagagcaacgagctagtcaagatgctaatggagggggacaagcaagaactgaagatagtctctattgtaggatttggtggattaggcaagacaacactagctaaagtagtgtatgaaaagcttaaagtacaattcgcttgtgggttctttgttaccatgtcacttaaccccaacatggagaagattttcagcaacatgctctgtcaactagacaaggaaaaatacagtcacgtgaccgaagcatcatggggtgaagcacaacttatcaacgaaatacgggaattccttcaaaacaagaggtaatgaatgatttctttgtgggttcataaattaatccacgcgaatatagttctcaaagaaacctatatagcttttgaaagagattttctaatatatgctcctttcgtattcccaaataggtattttattgttattgatgacatatggagtaatgttgtgtgggaaacaatcaaatatactttccttggaaatgaatgtggaagtaaaataattacaacaactcggattcttgatgttgccaaagaagttggaggtgtttaccaactaaaacctctttctcctgctgtttcaagaaagttgttttaccaaaaaatatttggcgctgaagacagatgtcctgttcaattagctgtagtgtctgaaggcattttaaagaaatgtggtggtgtaccattagctatcattacaatagctagtctactggccagtaaaaacgatagggataatatattagagtactggtccaaggtgtaccattctattggttctgggctagaagataatcttcatgtgaataatatgagaaagatattatctgtcagttactataatttaccaccacatttgagggcttgtttgttgtacctaagctgttatccggaggatactaacattggcaacaaagatgtgatatggaaatggatatgtgaaggttttgttcgtgctgaacacatgaagactttgcatgttgttggaatggagtatttaaatgagctctggaacaaaagcttgatacagccaatatctaattgtgataacatgccatgggattattgtctacatgatatggtgcttgacctcatcaccttcttgtcgaacgaagagcaatttatgacatcattaggtgatcagcagccaatgctagtacctcacaagatccgccgactatccctccaatctatcaaacaagagtacttcaagctaatttcaaatgcggacctatcccatgtgagatcactgattgtgtccaagcaagcattcagtctgttaccaaacctttcgagctttccggtgttacgtgtgttggatttaagtggttgtgatcaagtggataatcgtcattgtagggatatttgcaatatgcttcacttgaggtatttgaatctacataggacatctatatctgagattccagaagagattggtaagttacagttcttgctggtattggacataactaaaactagactaagggaagtgccatcaacctttgtgcaattacaacaattggtggacctgtgtgttggccctgggatgagattaccggatgattttgggaacttgaaaactctacaaagtatatggccacatatctatgtcatgtctccaaccatgctgcgcaatatgggcggtctgaccaagctgaggcatttgtcaatacgatttcatgaatgggacgagagctaccagaaatcttttgagttgtgcctatccaacctggtcaatctcagatcaataaccgtacgtgtatatgagggagtcatggattccaaatgtgagaatttatcaccgggaccacaacagcttgaagacatcgacatgaacaggagtgtggccaattcagtaccaatctggatgtcctcattgtccttcctctcatccctagacatcaagttgaaaacattggggcataaggacctccaaatccttgggaacatgccatctcttagtgatcttaccttatgggtgaatgagcccacgcaagacagacatgaaaggttggtcatcgacaattgttatccattccattgtctaacatttcttaaactgatggctaacaacatggaggtggcgtttgcacaaggacccatgcaaaagctccaaaaactacgctttggatttggagtgcggaaaacagtggatcagtttggtaatttcgactttggactggagaagatctcagttgagcatttagatgtttgcgtcaattattccgacgccaacagatgggaggtgaacgctgcggaagctgcaatccgggaagcggtcaacatgaatcccaacaaccccacactcgagttaacaacggtaactcacactaattcaccattcccttttgagcaatgacatgcatgtaggagtatttgtttagctaattatttgcttgcttgcttgtttgttctttatccagcttttcgttctgttgtga
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| CDS seq | atggagatcgtgacgggagcgattagcaccctcctgcccaagctgggagagctgctgagggaggagtaccagctgcagaagagcgtcaggggcgagatcatgttcctcaaagctgagttggagagcatggaggcagcgctgcttgatgtctccgaggcaccaattgatcagccgcctaataatcaagtcaagctttgggcgaggaacgtcagggagctgtcctacgacatcgaggacagcattgacaagttcatggtgcgcattgacacccatgccgcacctcacaagctgcatagcttcagggacttcattgatagaagcctagacctgctgacaaaggccaagatccgccattccatcggcaccgatatcaaagacatcaaaagccgtattaaggagattagtgagcgtcgtgatagatacaaggttgacaatgttgttaccgtaccatttagtccaactgttgatagccttcgcctatcagctttgtacaagaagatgacagaactcgttggcatcgaagagaagagcaacgagctagtcaagatgctaatggagggggacaagcaagaactgaagatagtctctattgtaggatttggtggattaggcaagacaacactagctaaagtagtgtatgaaaagcttaaagtacaattcgcttgtgggttctttgttaccatgtcacttaaccccaacatggagaagattttcagcaacatgctctgtcaactagacaaggaaaaatacagtcacgtgaccgaagcatcatggggtgaagcacaacttatcaacgaaatacgggaattccttcaaaacaagaggtattttattgttattgatgacatatggagtaatgttgtgtgggaaacaatcaaatatactttccttggaaatgaatgtggaagtaaaataattacaacaactcggattcttgatgttgccaaagaagttggaggtgtttaccaactaaaacctctttctcctgctgtttcaagaaagttgttttaccaaaaaatatttggcgctgaagacagatgtcctgttcaattagctgtagtgtctgaaggcattttaaagaaatgtggtggtgtaccattagctatcattacaatagctagtctactggccagtaaaaacgatagggataatatattagagtactggtccaaggtgtaccattctattggttctgggctagaagataatcttcatgtgaataatatgagaaagatattatctgtcagttactataatttaccaccacatttgagggcttgtttgttgtacctaagctgttatccggaggatactaacattggcaacaaagatgtgatatggaaatggatatgtgaaggttttgttcgtgctgaacacatgaagactttgcatgttgttggaatggagtatttaaatgagctctggaacaaaagcttgatacagccaatatctaattgtgataacatgccatgggattattgtctacatgatatggtgcttgacctcatcaccttcttgtcgaacgaagagcaatttatgacatcattaggtgatcagcagccaatgctagtacctcacaagatccgccgactatccctccaatctatcaaacaagagtacttcaagctaatttcaaatgcggacctatcccatgtgagatcactgattgtgtccaagcaagcattcagtctgttaccaaacctttcgagctttccggtgttacgtgtgttggatttaagtggttgtgatcaagtggataatcgtcattgtagggatatttgcaatatgcttcacttgaggtatttgaatctacataggacatctatatctgagattccagaagagattggtaagttacagttcttgctggtattggacataactaaaactagactaagggaagtgccatcaacctttgtgcaattacaacaattggtggacctgtgtgttggccctgggatgagattaccggatgattttgggaacttgaaaactctacaaagtatatggccacatatctatgtcatgtctccaaccatgctgcgcaatatgggcggtctgaccaagctgaggcatttgtcaatacgatttcatgaatgggacgagagctaccagaaatcttttgagttgtgcctatccaacctggtcaatctcagatcaataaccgtacgtgtatatgagggagtcatggattccaaatgtgagaatttatcaccgggaccacaacagcttgaagacatcgacatgaacaggagtgtggccaattcagtaccaatctggatgtcctcattgtccttcctctcatccctagacatcaagttgaaaacattggggcataaggacctccaaatccttgggaacatgccatctcttagtgatcttaccttatgggtgaatgagcccacgcaagacagacatgaaaggttggtcatcgacaattgttatccattccattgtctaacatttcttaaactgatggctaacaacatggaggtggcgtttgcacaaggacccatgcaaaagctccaaaaactacgctttggatttggagtgcggaaaacagtggatcagtttggtaatttcgactttggactggagaagatctcagttgagcatttagatgtttgcgtcaattattccgacgccaacagatgggaggtgaacgctgcggaagctgcaatccgggaagcggtcaacatgaatcccaacaaccccacactcgagttaacaacgcttttcgttctgttgtga
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| Protein seq | MEIVTGAISTLLPKLGELLREEYQLQKSVRGEIMFLKAELESMEAALLDVSEAPIDQPPNNQVKLWARNVRELSYDIEDSIDKFMVRIDTHAAPHKLHSFRDFIDRSLDLLTKAKIRHSIGTDIKDIKSRIKEISERRDRYKVDNVVTVPFSPTVDSLRLSALYKKMTELVGIEEKSNELVKMLMEGDKQELKIVSIVGFGGLGKTTLAKVVYEKLKVQFACGFFVTMSLNPNMEKIFSNMLCQLDKEKYSHVTEASWGEAQLINEIREFLQNKRYFIVIDDIWSNVVWETIKYTFLGNECGSKIITTTRILDVAKEVGGVYQLKPLSPAVSRKLFYQKIFGAEDRCPVQLAVVSEGILKKCGGVPLAIITIASLLASKNDRDNILEYWSKVYHSIGSGLEDNLHVNNMRKILSVSYYNLPPHLRACLLYLSCYPEDTNIGNKDVIWKWICEGFVRAEHMKTLHVVGMEYLNELWNKSLIQPISNCDNMPWDYCLHDMVLDLITFLSNEEQFMTSLGDQQPMLVPHKIRRLSLQSIKQEYFKLISNADLSHVRSLIVSKQAFSLLPNLSSFPVLRVLDLSGCDQVDNRHCRDICNMLHLRYLNLHRTSISEIPEEIGKLQFLLVLDITKTRLREVPSTFVQLQQLVDLCVGPGMRLPDDFGNLKTLQSIWPHIYVMSPTMLRNMGGLTKLRHLSIRFHEWDESYQKSFELCLSNLVNLRSITVRVYEGVMDSKCENLSPGPQQLEDIDMNRSVANSVPIWMSSLSFLSSLDIKLKTLGHKDLQILGNMPSLSDLTLWVNEPTQDRHERLVIDNCYPFHCLTFLKLMANNMEVAFAQGPMQKLQKLRFGFGVRKTVDQFGNFDFGLEKISVEHLDVCVNYSDANRWEVNAAEAAIREAVNMNPNNPTLELTTLFVLL |
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| Function | Disease resistance protein RGA5 [UniProtKB/Swiss-Prot:Q2R8L1] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLiXu_11g0016680 | OsLiXu_11g0016680.01 | Chr11 | 23536149 | 23539122 | + | NAM | ||
| CDS seq | atggagatcgtgacgggagcgattagcaccctcctgcccaagctgggagagctgctgagggaggagtaccagctgcagaagagcgtcaggggcgagatcatgttcctcaaagctgagttggagagcatggaggcagcgctgcttgatgtctccgaggcaccaattgatcagccgcctaataatcaagtcaagctttgggcgaggaacgtcagggagctgtcctacgacatcgaggacagcattgacaagttcatggtgcgcattgacacccatgccgcacctcacaagctgcatagcttcagggacttcattgatagaagcctagacctgctgacaaaggccaagatccgccattccatcggcaccgatatcaaagacatcaaaagccgtattaaggagattagtgagcgtcgtgatagatacaaggttgacaatgttgttaccgtaccatttagtccaactgttgatagccttcgcctatcagctttgtacaagaagatgacagaactcgttggcatcgaagagaagagcaacgagctagtcaagatgctaatggagggggacaagcaagaactgaagatagtctctattgtaggatttggtggattaggcaagacaacactagctaaagtagtgtatgaaaagcttaaagtacaattcgcttgtgggttctttgttaccatgtcacttaaccccaacatggagaagattttcagcaacatgctctgtcaactagacaaggaaaaatacagtcacgtgaccgaagcatcatggggtgaagcacaacttatcaacgaaatacgggaattccttcaaaacaagaggtattttattgttattgatgacatatggagtaatgttgtgtgggaaacaatcaaatatactttccttggaaatgaatgtggaagtaaaataattacaacaactcggattcttgatgttgccaaagaagttggaggtgtttaccaactaaaacctctttctcctgctgtttcaagaaagttgttttaccaaaaaatatttggcgctgaagacagatgtcctgttcaattagctgtagtgtctgaaggcattttaaagaaatgtggtggtgtaccattagctatcattacaatagctagtctactggccagtaaaaacgatagggataatatattagagtactggtccaaggtgtaccattctattggttctgggctagaagataatcttcatgtgaataatatgagaaagatattatctgtcagttactataatttaccaccacatttgagggcttgtttgttgtacctaagctgttatccggaggatactaacattggcaacaaagatgtgatatggaaatggatatgtgaaggttttgttcgtgctgaacacatgaagactttgcatgttgttggaatggagtatttaaatgagctctggaacaaaagcttgatacagccaatatctaattgtgataacatgccatgggattattgtctacatgatatggtgcttgacctcatcaccttcttgtcgaacgaagagcaatttatgacatcattaggtgatcagcagccaatgctagtacctcacaagatccgccgactatccctccaatctatcaaacaagagtacttcaagctaatttcaaatgcggacctatcccatgtgagatcactgattgtgtccaagcaagcattcagtctgttaccaaacctttcgagctttccggtgttacgtgtgttggatttaagtggttgtgatcaagtggataatcgtcattgtagggatatttgcaatatgcttcacttgaggtatttgaatctacataggacatctatatctgagattccagaagagattggtaagttacagttcttgctggtattggacataactaaaactagactaagggaagtgccatcaacctttgtgcaattacaacaattggtggacctgtgtgttggccctgggatgagattaccggatgattttgggaacttgaaaactctacaaagtatatggccacatatctatgtcatgtctccaaccatgctgcgcaatatgggcggtctgaccaagctgaggcatttgtcaatacgatttcatgaatgggacgagagctaccagaaatcttttgagttgtgcctatccaacctggtcaatctcagatcaataaccgtacgtgtatatgagggagtcatggattccaaatgtgagaatttatcaccgggaccacaacagcttgaagacatcgacatgaacaggagtgtggccaattcagtaccaatctggatgtcctcattgtccttcctctcatccctagacatcaagttgaaaacattggggcataaggacctccaaatccttgggaacatgccatctcttagtgatcttaccttatgggtgaatgagcccacgcaagacagacatgaaaggttggtcatcgacaattgttatccattccattgtctaacatttcttaaactgatggctaacaacatggaggtggcgtttgcacaaggacccatgcaaaagctccaaaaactacgctttggatttggagtgcggaaaacagtggatcagtttggtaatttcgactttggactggagaagatctcagttgagcatttagatgtttgcgtcaattattccgacgccaacagatgggaggtgaacgctgcggaagctgcaatccgggaagcggtcaacatgaatcccaacaaccccacactcgagttaacaacgcttttcgttctgttgtga
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| Protein seq | MEIVTGAISTLLPKLGELLREEYQLQKSVRGEIMFLKAELESMEAALLDVSEAPIDQPPNNQVKLWARNVRELSYDIEDSIDKFMVRIDTHAAPHKLHSFRDFIDRSLDLLTKAKIRHSIGTDIKDIKSRIKEISERRDRYKVDNVVTVPFSPTVDSLRLSALYKKMTELVGIEEKSNELVKMLMEGDKQELKIVSIVGFGGLGKTTLAKVVYEKLKVQFACGFFVTMSLNPNMEKIFSNMLCQLDKEKYSHVTEASWGEAQLINEIREFLQNKRYFIVIDDIWSNVVWETIKYTFLGNECGSKIITTTRILDVAKEVGGVYQLKPLSPAVSRKLFYQKIFGAEDRCPVQLAVVSEGILKKCGGVPLAIITIASLLASKNDRDNILEYWSKVYHSIGSGLEDNLHVNNMRKILSVSYYNLPPHLRACLLYLSCYPEDTNIGNKDVIWKWICEGFVRAEHMKTLHVVGMEYLNELWNKSLIQPISNCDNMPWDYCLHDMVLDLITFLSNEEQFMTSLGDQQPMLVPHKIRRLSLQSIKQEYFKLISNADLSHVRSLIVSKQAFSLLPNLSSFPVLRVLDLSGCDQVDNRHCRDICNMLHLRYLNLHRTSISEIPEEIGKLQFLLVLDITKTRLREVPSTFVQLQQLVDLCVGPGMRLPDDFGNLKTLQSIWPHIYVMSPTMLRNMGGLTKLRHLSIRFHEWDESYQKSFELCLSNLVNLRSITVRVYEGVMDSKCENLSPGPQQLEDIDMNRSVANSVPIWMSSLSFLSSLDIKLKTLGHKDLQILGNMPSLSDLTLWVNEPTQDRHERLVIDNCYPFHCLTFLKLMANNMEVAFAQGPMQKLQKLRFGFGVRKTVDQFGNFDFGLEKISVEHLDVCVNYSDANRWEVNAAEAAIREAVNMNPNNPTLELTTLFVLL
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.351766 | 0.0 | 0.194610 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_11g0550500 | SBH | 0.123558 | 0.382721 | 2.032062 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os11g34970 | RBH | 0.0 | 0.0 | 0.000000 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os11g0550500 | SBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_11g0017070 | RBH | 0.218990 | 1.866706 | 2.530927 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_11g0017160 | RBH | 0.000000 | 0.000000 | 0.000000 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_11g0017010 | RBH | 0.000000 | 1.615474 | 1.787284 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_11g0016660 | RBH | 0.000000 | 0.000000 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_11g0016940 | RBH | 2.187675 | 1.089475 | 5.508959 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_11G0321600 | RBH | 0.438799 | 2.9802755 | 1.530538 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_11g0017430 | RBH | 0.235359 | 0.091657 | 0.567855 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_11G0330600 | RBH | 2.1264245 | 6.1214985 | 5.670177 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_11g0017280 | RBH | 0.175401 | 0.176676 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_11g0017300 | RBH | 0.148575 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_11g0016820 | RBH | 1.712640 | 14.700884 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_Ung0071920 | RBH | 0.000000 | 0.0 | 0.272299 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_11g0016870 | RBH | 0.119434 | 4.523183 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_11G016800 | RBH | 0.113983 | 2.011609 | 0.791362 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_11g0017140 | RBH | 0.821338 | 5.267231 | 1.813038 |
