Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLima_11g0023210 | OGI:11076000 | 3/16 | LIMA | Os127564RS1 | Gramene(+IsoSeq) | Chr11:28914508-28923902 | ||||||||
| Gene Symbol | UBP4-1, OsUBP4-1, UBP4-7, OsUBP4-7 | ||||||||||
| DNA seq | atggcgctgtggggcgggctggggcagacggcgacggtggcgcagctggtcggagtggacgtcggagggctggtctccatgatcatgcacgcggcgttgacagctcggcagaacaagagggagtgcgagcagctggcccgccgcgtcttcatgatcggcgagctgctgccgcacctgcaggactcgtcggtgatgcggcggccggaggtccggcgcccgctgatgctgctcggaggcatgctccgggaggcgcacgagctcgtcgcctcctgccagggcaggagcacggtgtaccagttggtggcagccgggcggcaagctgaaaagttcagagatatccagcgtagaatcgactcctacctcctcctcttccccttcatcagccacatcgacatcacgtgccgtctcgatcgaatccacagagagatgattccaagtgatcacccgaagccgacgtccctgccgtctccatctacaggctcccagaatcatgaagcggtggtcattcaagacgtggtaatccatggcggggaagctggtgagaagataaacttggcggggctcgctgcggcgacgaacaacttcgccccccacagagagatcggtaaaggcggcttcagcacggtgtacatgactaggcttcccgacggacgggaggtggccatcaagcgcatcgacagcgcgtctatggaggaggacaccctgagagaggccaccatgctaccctcgcttcgccacgagcacatcattcgcctctttggctgggtcagcgtgagaaagaagcagcatcggcagcaaccattctggaagaagaggaaaggtattttttctatcccttagatatctactaccttcgtttcaggttacaagactttctaacactacccacacacacaaaatatgaaatggaggaagtattttttaacagttatatataaaaatcataagggcaacgctccggtgcattctacttgtagtattctactccaagtagaattcatctcgaccctttattttaaagggtaggttagtaatcttttaatacagcttagggataattttggtatgggattattgttggatatgctttggatcggtttggcacaaagtgaaactacaaattgaaatgggattgagtcataccttgatctccaggggttcccatttctctgtctttattcttctctcgttctctcttgttttgaagcacagagagagatgtgtttcggttcttccctgtgttctcagtgggtttcggttgatcgggtagcaattgagtcttagggtttgcacttaggtattgatttcTttttatacccactgcacacaGggggaaccgacactgggtatggcggttatcccccgatcagggatgttcatgagagatcgatcactgtagcgatcaccctaaacaaaatatctctttgccgactttaggtttagccgcaagatcataTtttgtgttcacactaacattctcccccttgatcgtgaggctaaacttataagtccatttctcaacaaaatagtataccaagacaaaagattacagtgaccaatataaagtatcacagaatccagtaactatagcgtactattatattttaaaataaacttctttaatcttacgagctctttgaacttattacattaggcttatacaaacttatggactcactttttaataaaacagtacatcaagacactagattacagtagtcaattaagcaccactgaaccaagtgactatggttcccatttaatttcaaaatgagtccgccttagttttatggggagtcagtgccatataggttcctacttattccaggatcaaaggcttttctaccaaacccatgccagcaacatgttctttaaatacagcgggtggtaggccttttgtaagtggatccgctaacatcaacttagtgttcatatactcaacgcttattgtctgatcttggatcatttctttcacaacatggtacttgatatcaatgtacttggcagaagcacttgatttgttgctactcgcatagtatactgctggtttgttatcgcagtataatttgagtggttttgatatgctgtcgaccactcttaatcctgggataaagtttttcagccatattgcctgtccagtagcttcataacatgccacatactcagcctgcattgtcgacgatgcagtaaccttttgtttggagctcttccacgatacagctccccttgcaagggtgaatatataacctgacgtggatttcttatcatcaacacaccctgcaagatcagagtctgaataaccaataacttcaaggttttcagactttctatatgtgagcatgaggtctttagtgccttgaagataacgcaaggtcttcttagctaatttccagtgttctagacttggattagattgatatctgccaagcatcccggtaacaaaagctaaatctgggcgagtgcacacttgtgcatacattatgcttccgacagctgaagcatatggtattgacttcatctgcgcagcttcatactcattcttaggacattggaactttccatacttatcacccttcattataggagcaggcgaggctgaacaattatgcataTtTATACTTCTTCAGTACCTTTTCTATATATGCTTTCTGAGATAACCCCAAAACACCATTTGATCTGTCTCGGTAAATCTCTATACCCAACACATAAGTGGCTTCACCGAGATCTTTCATTTCAAACTTAGAGGCCAGAAATTTCTTTGTTTCCAGTAGCATATTTCTGTTATTACTGGCTAAGAGTATGTCATCAACATATAATATTAGGAAGATGAACTTACTCTCTTTAAACTTAGCGTATATACAGTCATCCTTTTTATTTTCTTTAAAACCAAATTGTCTTATGATTTGGTCAAACTTTAGATACCACTGCCTTGATGCTTGCTTTAGTCCATAAATCGATTTCTTTAGATAACATCCCATATGTTCTTTTCCTTTCATAACAAAACCTTCTGGTTGTGCCATGTATACATCTTCATACAGATCACCGTTCAGGAATGCCGTCTTAACATCCATTttggtgtaattccaaatcataatgagcaactagtgccataataattctgaatgaatccttagtagacactagagaaaatgtttcattataatcaatcccttctctttgcgtaaatccttttgctacaagccttactttgaaccttttgatatttcccttggggtcacgtttagtcttatagacccatttgcagccaactgttttggctccttcgggaatttctaccaagtcccagaccttatttgtactcatggatttcatttcgtctttcatagcttttagccattcagacgaatgttcgcccttcattgcttctttaaatgagatgggatcattatctagtataggctcattcacctcttcactcataggttcattcacctcttcattcatgtaagtgatatagtcacttggaattgctgactttctaactcgttgtgatcttctgacgggttcgttattttgctcatctatcacaatctggggctgctgagcatcctcattattctcatcatttgatatactactagaagtagttgcaggagcttcagcaggtgttgcatcattatgtctttctattgaaggtgTaacatgagtatgtgttgagaaaacgggttctttaattataggcattggaacataattctgtttctcttccagaacaacctctctgggtgtcatactccccttgattatgtcattttccaagaacacagcgtgtcttgtttcaatgaactttgtaaactgatttgggcagtagaatctatatgcctttgacttatcaggataaccgataaaatgacaactgattgttttgaggtctaattttCccatatttggattgaaaactcgtgcttcagcaggacaaccccacacatgaaaataatttagggttggtttcttcccagtccataattcaaagggtgtcttagggacTgatttactgggaatcctgttaagaatgtgtgtagctgttttaagagcttccatccataactttaccggcagagtggagtgacttaacatacttcgtaccatatccataagagtgcgattacgcctttcagctactccattttgctggggttcgcccggtgctgagtactgggccttaatgccactttcctgtaagaacctcgcaaaaggtccaggaaTttgaccataagtagtatgtctaccatagtattcaccaccacggtcagatcttacaattttgatctttcgatcatgttgattctcaacttctgctttgaagattttaaatttgtctaatgcctcagatctttctttgattggataaatatatccataacgagagtaatcgtcggtgaatgttatgaatgaatcaaatccatccactgacttttcattaaatggaccacagatgtctgtgtggataatttccaaaattcccatacttcgatttgcacctttcttgatttgcttggaatattttcctttaatgcaatcaatgcagtgatcaatatctgcatctgagaagtccaaaggataaagaatgttttctttaatgagacgctcaattctCcccctcgaaatatggcccaaacgatagtgccataatttcgaagaagtctcattatcgttatgtttttgtttggtactgatatttgcatttgaggaggagtcaacattataggtggcatcgcacacagagatttgataaagttgttcccatccaacggcgagaccaacctctttattatcatgcataattatacatctattgtttccaaaagtacaatagtaaccatcgttatctaaacgtgaaactgaaactaagtttcTtttcatagagggtacataaagaacatcatgcagctgaagtttgaagccagtatgaagtgtgagagtgaagtctccaatagcctcaacttcagtttcaactccattagcaactctaattcttctttcccctctttttagggTCCtcctcatagcgaatccctgcaaggaatttgcaacatgaaatgtcgctcctgagtcaatccaccaagaattggtggcataatcaatattcagggattcatcaacaaaagaaataatatcagtacctttcttactaagccatctcataaacccaatacagtctttttggcggtgtccactctttccacaaaagtagcacccatccttttcttttcccttttcttctgtatagggatttcctccagatttattctgctgggattgactcgaagattgccctttttctttaaactgaataggcttatgcttcaaatactccttcttaaatttcttatactttttcttctcggagtgtttaaatagatttgcatggtcaactctttctgCcttaagcctttcctcttcttgtacacacatggctattaattcatcaatgccccacttgatcttcattgcattataattgattgtaaatgaagaaaactcctgaggcagagatgacataatgaaatggacaagaaaaccttcagagatttccatttccattgatttaagtttagaagccatgtgacatttcttcataatatgttccctcagatttccagtaaaatcatatctttcattgaccaaccttttaataagagtggtggcataaaccttagaagagcctttaaattgctcctcaattttagcaagatattctctggctgtctgagtatctggaactactcctcttattgcgtcaataatggagctcttgataatcataaggcatttacggtttgaaatatcccattttgcctttacttcatcatatatccttttaagggtctcataattctcattttccggtctaggctcaaccggaggatcattatggagggcataatcaatatccaacagagctagagtaatttccagcttttctttccatgaagcataattacttccattaagttgttcaatatttcccattattccggaaatttgtgaggcataagatgctgcataagagagaatcagcagctaaataagtaccttcttttattgatcaaatccaaaacagctttggccagagaaggaaatgaacaataaaatttttgtgaataagtatttattaatcagctttggccagaataataaatacaaaccacactttatcaatttgtttaaaactccttttattaattcaatcaaaacagctttggccagatttgaattgaattaataaaattttgtgatcaaataaaagtcaatcagctttggccagaatgacaattatttgtcacacttaattataatattcatttgtagcggaaataaactcataatgcataaaacaataataactttaagtaataaatataatgtaatgatcataaaataaataaataaataaatgaaagagaattttatcacataacaaaattacttattattctttattatcattaactaagacataataaatatctttaatgtttaaacacaaatattataatcataatcataattcttcaaaaaataaaaaatttaattgtaatattattctcagcccaatcttttaaattaggcccattactatgcagcccgttttttttttttttttggccttcttcccctgaggcaggccgcattgggcctggcccgttacggctgagccgcctcccgcctgggctccaggcccaacaacctgggcctgggccggcattcgccgtctccccgcgcggcctcatcagcccgcgtcgggagtgagccgatccgagccgtccatctcatcggacggccgggatcactccCGcgcagaacaaaactggcgcggcggctgcccccgcgcgaaaccctagccccaTtttctcctcctctctctctctctcacccgcggcgaccgtgagcgagacgacgacagcggtgaaacggcgcacggcgggagtggtgatggcgccgccgagccttgctcgccggggctgcgtgccgccatagctggcgcgcatccccgtcgagcgttgctcgacggtgccctaagcacccgccggtcgctcgcacgaggaagatccgcggtggcgacagcgagacggggcggtgacagctacctcagcgaggcggcgtcggcgaggaggaggagccgggccggcacggcgggtcgcgaggccgctctaggaccaagtcctcgggcgcgcgctcgccttttattgcgtcggtggcgacacggaggtcgccgccggccaccatgcccttaggtaagcccgccgcacttcttttCcccatgatcttagggttagggtttcatgatttggggaaattttgggggcttactgtagctagggtttcggttctttggggatttgtctgagatttccatgaacttttgcttccccttcttctaatttcttcaagccgaaaccctagaaggcctaattccatttcttatgcttcgggattgcatgatttgggcttaactcaactttaacagagggatttgggcatgaacacgaagaacaatttgaacatgaacacttattgagttccaatttgaggccaacccggtgctctgataccattgttggatatgctttggatcggtttggcacaaagtgaaactacaaattgaaatgggattgagtcataccttgatctccaggggttcccatttctctgtctttattcttctctcgttctctcttgttttgaagcacagagagagatgtgtttcggttcttccctgtgttctcagtgggtttcggttgatcgggtagcaattgagtcttagggtttgcacttaggtattgatttctttttatacccactgcacacagggggaaccgacactgggtatggcggttatcccccgatcagggatgttcatgagagatcgatcactgtagcgatcgccctaaacaaaatatctctttgccgactttaggtttagccgcaagatcatattttgtgttcacactaacaattatttctttttctcatcttttcgccttaggtccgtcaaaacgcatatcgcccgcgcccctgcacccccgacgcaggcaccgcttcggtcatcgcaggcggcggcgcggcgaaaatcgctgtcggctccggatcaggatcgccggcggacctcctcctccggcccccacctccgccgccactccgccctcctatctactccaccggcggcttgccgacccgaagCccccccatccccccagcccccgacgcaggcaccgcatcagtcatcgaatgcggcggcgcggccggcggcgctgccagcatcaggtctgacgcaaaagctcccgactcgcaggcaccgcatcaccgcatctggttgttgtattctctgatttagccttaaccttgtgctatggtgctgtgtgtatgcatggttaaattcttctcgataagcctgaagtatgtagtgttccttttggatattatgtataaacgacatatcttatatttggtgcttgtaccgtaggtgaggtctgtcataatatgcagctattgctttcactgagagcgcacatgctagtaaactagtattttagatgcaaatattagtgctataagaaatatttttgctagtttttcagttgttacttaattatgaacacatgtactttagatccagaccactttatgaatcagcacatttggtgcaaaccatttttattatcgactacttatcaatgtccattggctacaaaatgcagtaggacaatatgacacctcaatgctgaaaagtctatctgagattcataagcttgagcttatcccgaaaggaaatgaagattatgtcgcactacatggttatctggaagcctttctaaaagtggaacagttggacccagaagacaatgtggtgagtgccccttaggaacagctgttatgctcttggcttcactgcttattgaatagccttctttgcaatcttcatttcttttgttaaccaaaataggttgatgtgcgtatgtatgatgtggaaacattaccttcgcaaaatatcaccacaatacgtggcttgctttggattctgaattggaagttactgttgttgcataactgatgaccacttttttctctgctttgcattcaggtactgcccatgctgcaaaaagcatcaacaagcgatgaagaaattagatctgtggaggctaccggaagttctggtcattcatctcaaaaggttctcgtacacccaattcacaagaaataagcttgagactatctttttcaatgtcttgataatgagcaaggctggttggtttctgcagcatgaagaagggaagggatggtacaagtttgatgatgagtgcgtgagacctataactgaagacagtataaagacacctgctgcttatgtgctgttctacacacgagaatga
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| CDS seq | atggcgctgtggggcgggctggggcagacggcgacggtggcgcagctggtcggagtggacgtcggagggctggtctccatgatcatgcacgcggcgttgacagctcggcagaacaagagggagtgcgagcagctggcccgccgcgtcttcatgatcggcgagctgctgccgcacctgcaggactcgtcggtgatgcggcggccggaggtccggcgcccgctgatgctgctcggaggcatgctccgggaggcgcacgagctcgtcgcctcctgccagggcaggagcacggtgtaccagttggtggcagccgggcggcaagctgaaaagttcagagatatccagcgtagaatcgactcctacctcctcctcttccccttcatcagccacatcgacatcacgtgccgtctcgatcgaatccacagagagatgattccaagtgatcacccgaagccgacgtccctgccgtctccatctacaggctcccagaatcatgaagcggtggtcattcaagacgtggtaatccatggcggggaagctggtgagaagataaacttggcggggctcgctgcggcgacgaacaacttcgccccccacagagagatcggtaaaggcggcttcagcacggtgtacatgactaggcttcccgacggacgggaggtggccatcaagcgcatcgacagcgcgtctatggaggaggacaccctgagagaggccaccatgctaccctcgcttcgccacgagcacatcattcgcctctttggctgggttgatgtgcgtatgtactgcccatgctgcaaaaagcatcaacaagcgatgaagaaattagatctgtggaggctaccggaagttctggtcattcatctcaaaaggttctcgtacacccaattcacaagaaataagcttgagactatctttttcaatgtcttgataatgagcaaggctggttggtttctgcagcatgaagaagggaagggatggtacaagtttgatgatgagtgcgtgagacctataactgaagacagtataaagacacctgctgcttatgtgctgttctacacacgagaatga
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| Protein seq | MALWGGLGQTATVAQLVGVDVGGLVSMIMHAALTARQNKRECEQLARRVFMIGELLPHLQDSSVMRRPEVRRPLMLLGGMLREAHELVASCQGRSTVYQLVAAGRQAEKFRDIQRRIDSYLLLFPFISHIDITCRLDRIHREMIPSDHPKPTSLPSPSTGSQNHEAVVIQDVVIHGGEAGEKINLAGLAAATNNFAPHREIGKGGFSTVYMTRLPDGREVAIKRIDSASMEEDTLREATMLPSLRHEHIIRLFGWVDVRMYCPCCKKHQQAMKKLDLWRLPEVLVIHLKRFSYTQFTRNKLETIFFNVLIMSKAGWFLQHEEGKGWYKFDDECVRPITEDSIKTPAAYVLFYTRE |
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| Function | Cell number regulator 13 [UniProtKB/Swiss-Prot:B6SJQ0] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLima_11g0023210 | OsLima_11g0023210.01 | Chr11 | 28914508 | 28923902 | + | NAM | ||
| CDS seq | atggcgctgtggggcgggctggggcagacggcgacggtggcgcagctggtcggagtggacgtcggagggctggtctccatgatcatgcacgcggcgttgacagctcggcagaacaagagggagtgcgagcagctggcccgccgcgtcttcatgatcggcgagctgctgccgcacctgcaggactcgtcggtgatgcggcggccggaggtccggcgcccgctgatgctgctcggaggcatgctccgggaggcgcacgagctcgtcgcctcctgccagggcaggagcacggtgtaccagttggtggcagccgggcggcaagctgaaaagttcagagatatccagcgtagaatcgactcctacctcctcctcttccccttcatcagccacatcgacatcacgtgccgtctcgatcgaatccacagagagatgattccaagtgatcacccgaagccgacgtccctgccgtctccatctacaggctcccagaatcatgaagcggtggtcattcaagacgtggtaatccatggcggggaagctggtgagaagataaacttggcggggctcgctgcggcgacgaacaacttcgccccccacagagagatcggtaaaggcggcttcagcacggtgtacatgactaggcttcccgacggacgggaggtggccatcaagcgcatcgacagcgcgtctatggaggaggacaccctgagagaggccaccatgctaccctcgcttcgccacgagcacatcattcgcctctttggctgggttgatgtgcgtatgtactgcccatgctgcaaaaagcatcaacaagcgatgaagaaattagatctgtggaggctaccggaagttctggtcattcatctcaaaaggttctcgtacacccaattcacaagaaataagcttgagactatctttttcaatgtcttgataatgagcaaggctggttggtttctgcagcatgaagaagggaagggatggtacaagtttgatgatgagtgcgtgagacctataactgaagacagtataaagacacctgctgcttatgtgctgttctacacacgagaatga
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| Protein seq | MALWGGLGQTATVAQLVGVDVGGLVSMIMHAALTARQNKRECEQLARRVFMIGELLPHLQDSSVMRRPEVRRPLMLLGGMLREAHELVASCQGRSTVYQLVAAGRQAEKFRDIQRRIDSYLLLFPFISHIDITCRLDRIHREMIPSDHPKPTSLPSPSTGSQNHEAVVIQDVVIHGGEAGEKINLAGLAAATNNFAPHREIGKGGFSTVYMTRLPDGREVAIKRIDSASMEEDTLREATMLPSLRHEHIIRLFGWVDVRMYCPCCKKHQQAMKKLDLWRLPEVLVIHLKRFSYTQFTRNKLETIFFNVLIMSKAGWFLQHEEGKGWYKFDDECVRPITEDSIKTPAAYVLFYTRE
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_11g0666100 | SBH | 0.119349 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os11g44520 | RBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os11g0666100 | SBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_11g0023020 | SBH | 0.0 | 1.673250 | 0.0 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_11g0023100 | RBH | 0.0 | 0.0 | 0.0 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_11g0022740 | SBH | 0.0 | 0.000000 | 0.0 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_11g0018470 | RBH | 0.0 | 0.000000 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_11g0022680 | RBH | 0.0 | 0.0 | 0.0 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_11G0398300 | SBH | 0.033022 | 0 | 0 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_11g0023590 | SBH | 0.0 | 0.0 | 0.0 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_11G0419600 | SBH | 0 | 0 | 0.0053005 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_11g0023110 | SBH | 0.000000 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_11g0023340 | SBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_11g0022930 | SBH | 4.118145 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_11g0022650 | SBH | 0.0 | 0.0 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_11g0022450 | SBH | 0.0 | 0.000000 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_11G022910 | SBH | 0.0 | 0.0 | 0.0 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_11g0023190 | SBH | 0.0 | 0.0 | 0.0 |
