Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsNip_11g0666100 | OGI:11075910 | 16/16 | Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | Chr11:26875368-26876085 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | GCTTAAAAGTGAATTCTTTTACTCCATGGATTTCTGTCCGAACAAACTTTGTGGCAACCTAGTATATCGATGAATACACATCGGAAAGAAAAGAGGAACTGAATACCAAATCAAAAGAGTTGCAGTTGGTAGTAGTACAAGTACAAACAATTGAATGCTTGAGTCTTCCCATTTCAATGTATACCTGAGCGGCAGGGACTGGATTTGGGGGCACGGGGAAAGCAGGCGTAGATGGTCCGGGCGTGTTGGTTGGAAGCAGGATGTTGTAGATACGATCGAGACGACGAGTGATGTCTATGTGGCTGATGAATGGGAAGACGAGGAGGTACGAGTCGATCCTGCTCTGAACATCTCTGAACCTCTCAGCCTGCCGCCCTGCCATCACCAACCTGTACACGGCGCTCTTGTCCTGGCACGACAACACAAGCTCGTGCGCCTCCCGGAGCGTGTCGTCGAGCCCGGTCAGCGGCCGCCGGATCTCAGGCCGCCGAAGCACCTCCGGATCCTGCAGGTGCTGCAGCAGCTCGGCGATCGTGAAGACGCGGCGGGCGAGCTGCTCGCACTCCTTCTTGTTCTGTTGAGCCGTCATCGCAGCCTGCATGATCATGGAGATGAGGCCGCCGACGTCCGCCCCGACCAGCTGCGCCACCGTGGCCGCGTGCCCCGTCACGTCCCACAGTGCGATGGCACTAAGATCAGGATTCTGTTCTTTGTTCCT
More
|
||||||||||
| CDS seq | AGGAACAAAGAACAGAATCCTGATCTTAGTGCCATCGCACTGTGGGACGTGACGGGGCACGCGGCCACGGTGGCGCAGCTGGTCGGGGCGGACGTCGGCGGCCTCATCTCCATGATCATGCAGGCTGCGATGACGGCTCAACAGAACAAGAAGGAGTGCGAGCAGCTCGCCCGCCGCGTCTTCACGATCGCCGAGCTGCTGCAGCACCTGCAGGATCCGGAGGTGCTTCGGCGGCCTGAGATCCGGCGGCCGCTGACCGGGCTCGACGACACGCTCCGGGAGGCGCACGAGCTTGTGTTGTCGTGCCAGGACAAGAGCGCCGTGTACAGGTTGGTGATGGCAGGGCGGCAGGCTGAGAGGTTCAGAGATGTTCAGAGCAGGATCGACTCGTACCTCCTCGTCTTCCCATTCATCAGCCACATAGACATCACTCGTCGTCTCGATCGTATCTACAACATCCTGCTTCCAACCAACACGCCCGGACCATCTACGCCTGCTTTCCCCGTGCCCCCAAATCCAGTCCCTGCCGCTCAGGTATACATTGAAATGGGAAGACTCAAGCATTCAATTGTTTGTACTTGTACTACTACCAACTGCAACTCTTTTGATTTGGTATTCAGTTCCTCTTTTCTTTCCGATGTGTATTCATCGATATACTAG
More
|
||||||||||
| Protein seq | RNKEQNPDLSAIALWDVTGHAATVAQLVGADVGGLISMIMQAAMTAQQNKKECEQLARRVFTIAELLQHLQDPEVLRRPEIRRPLTGLDDTLREAHELVLSCQDKSAVYRLVMAGRQAERFRDVQSRIDSYLLVFPFISHIDITRRLDRIYNILLPTNTPGPSTPAFPVPPNPVPAAQVYIEMGRLKHSIVCTCTTTNCNSFDLVFSSSFLSDVYSSIY |
||||||||||
| Function | Cell number regulator 13 [UniProtKB/Swiss-Prot:B6SJQ0] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNip_11g0666100 | OsNip_11t0666100-01 | Chr11 | 26875368 | 26876085 | - | RAP2018-11-26 | ||
| CDS seq | AGGAACAAAGAACAGAATCCTGATCTTAGTGCCATCGCACTGTGGGACGTGACGGGGCACGCGGCCACGGTGGCGCAGCTGGTCGGGGCGGACGTCGGCGGCCTCATCTCCATGATCATGCAGGCTGCGATGACGGCTCAACAGAACAAGAAGGAGTGCGAGCAGCTCGCCCGCCGCGTCTTCACGATCGCCGAGCTGCTGCAGCACCTGCAGGATCCGGAGGTGCTTCGGCGGCCTGAGATCCGGCGGCCGCTGACCGGGCTCGACGACACGCTCCGGGAGGCGCACGAGCTTGTGTTGTCGTGCCAGGACAAGAGCGCCGTGTACAGGTTGGTGATGGCAGGGCGGCAGGCTGAGAGGTTCAGAGATGTTCAGAGCAGGATCGACTCGTACCTCCTCGTCTTCCCATTCATCAGCCACATAGACATCACTCGTCGTCTCGATCGTATCTACAACATCCTGCTTCCAACCAACACGCCCGGACCATCTACGCCTGCTTTCCCCGTGCCCCCAAATCCAGTCCCTGCCGCTCAGGTATACATTGAAATGGGAAGACTCAAGCATTCAATTGTTTGTACTTGTACTACTACCAACTGCAACTCTTTTGATTTGGTATTCAGTTCCTCTTTTCTTTCCGATGTGTATTCATCGATATACTAG
More
|
|||||||
| Protein seq | RNKEQNPDLSAIALWDVTGHAATVAQLVGADVGGLISMIMQAAMTAQQNKKECEQLARRVFTIAELLQHLQDPEVLRRPEIRRPLTGLDDTLREAHELVLSCQDKSAVYRLVMAGRQAERFRDVQSRIDSYLLVFPFISHIDITRRLDRIYNILLPTNTPGPSTPAFPVPPNPVPAAQVYIEMGRLKHSIVCTCTTTNCNSFDLVFSSSFLSDVYSSIY
More
|
|||||||
| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.119349 | 0.0 | 0.0 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_11g0666200 | SBH | 0.437268 | 0.359219 | 0.285375 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os11g44420 | RBH | 0.078620 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os11g0666100 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_11g0023000 | SBH | 0.101863 | 23.943014 | 0.311833 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_11g0023020 | SBH | 0.028885 | 0.0 | 0.072533 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_11g0022720 | RBH | 0.000000 | 6.946922 | 0.193026 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_11g0022410 | SBH | 0.0 | 0.709805 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_11g0022660 | RBH | 0.0 | 10.408031 | 0.888079 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_11G0400400 | RBH | 0.028851 | 0.502086 | 0.0511855 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_11g0023550 | RBH | 0.0 | 0.0 | 0.0 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_11G0422000 | SBH | 0.0640055 | 5.37775 | 0.1425045 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_11g0023110 | RBH | 0.000000 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_11g0023340 | RBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_11g0022890 | RBH | 0.0 | 0.000000 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_11g0022650 | SBH | 0.0 | 0.0 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_11g0022450 | SBH | 0.0 | 0.000000 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_11G022750 | SBH | 0.0 | 0.613823 | 0.0 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_11g0023190 | SBH | 0.0 | 0.0 | 0.0 |
