Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| LOC_Os11g44420 | OGI:11075910 | 16/16 | Nipponbare | IRGSP 1.0 | MSU | Chr11:26875367-26876117 | ||||||||
| Gene Symbol | RLCK319, OsRLCK319, OsCRLK21, CRLK21, - | ||||||||||
| DNA seq | TGCTTAAAAGTGAATTCTTTTACTCCATGGATTTCTGTCCGAACAAACTTTGTGGCAACCTAGTATATCGATGAATACACATCGGAAAGAAAAGAGGAACTGAATACCAAATCAAAAGAGTTGCAGTTGGTAGTAGTACAAGTACAAACAATTGAATGCTTGAGTCTTCCCATTTCAATGTATACCTGAGCGGCAGGGACTGGATTTGGGGGCACGGGGAAAGCAGGCGTAGATGGTCCGGGCGTGTTGGTTGGAAGCAGGATGTTGTAGATACGATCGAGACGACGAGTGATGTCTATGTGGCTGATGAATGGGAAGACGAGGAGGTACGAGTCGATCCTGCTCTGAACATCTCTGAACCTCTCAGCCTGCCGCCCTGCCATCACCAACCTGTACACGGCGCTCTTGTCCTGGCACGACAACACAAGCTCGTGCGCCTCCCGGAGCGTGTCGTCGAGCCCGGTCAGCGGCCGCCGGATCTCAGGCCGCCGAAGCACCTCCGGATCCTGCAGGTGCTGCAGCAGCTCGGCGATCGTGAAGACGCGGCGGGCGAGCTGCTCGCACTCCTTCTTGTTCTGTTGAGCCGTCATCGCAGCCTGCATGATCATGGAGATGAGGCCGCCGACGTCCGCCCCGACCAGCTGCGCCACCGTGGCCGCGTGCCCCGTCACGTCCCACAGTGCGATGGCACTAAGATCAGGATTCTGTTCTTTGTTCCTAACAAACGGATCGACAAATTAAGGTGAAATGC
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| CDS seq | ATGATCATGCAGGCTGCGATGACGGCTCAACAGAACAAGAAGGAGTGCGAGCAGCTCGCCCGCCGCGTCTTCACGATCGCCGAGCTGCTGCAGCACCTGCAGGATCCGGAGGTGCTTCGGCGGCCTGAGATCCGGCGGCCGCTGACCGGGCTCGACGACACGCTCCGGGAGGCGCACGAGCTTGTGTTGTCGTGCCAGGACAAGAGCGCCGTGTACAGGTTGGTGATGGCAGGGCGGCAGGCTGAGAGGTTCAGAGATGTTCAGAGCAGGATCGACTCGTACCTCCTCGTCTTCCCATTCATCAGCCACATAGACATCACTCGTCGTCTCGATCGTATCTACAACATCCTGCTTCCAACCAACACGCCCGGACCATCTACGCCTGCTTTCCCCGTGCCCCCAAATCCAGTCCCTGCCGCTCAGGTATACATTGAAATGGGAAGACTCAAGCATTCAATTGTTTGTACTTGTACTACTACCAACTGCAACTCTTTTGATTTGGTATTCAGTTCCTCTTTTCTTTCCGATGTGTATTCATCGATATACTAG
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| Protein seq | MIMQAAMTAQQNKKECEQLARRVFTIAELLQHLQDPEVLRRPEIRRPLTGLDDTLREAHELVLSCQDKSAVYRLVMAGRQAERFRDVQSRIDSYLLVFPFISHIDITRRLDRIYNILLPTNTPGPSTPAFPVPPNPVPAAQVYIEMGRLKHSIVCTCTTTNCNSFDLVFSSSFLSDVYSSIY |
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| Function | Protein MID1-COMPLEMENTING ACTIVITY 2 [UniProtKB/Swiss-Prot:Q3EBY6] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| LOC_Os11g44420 | LOC_Os11g44420.1 | Chr11 | 26875367 | 26876117 | - | MSU_osa1r7 | ||
| CDS seq | ATGATCATGCAGGCTGCGATGACGGCTCAACAGAACAAGAAGGAGTGCGAGCAGCTCGCCCGCCGCGTCTTCACGATCGCCGAGCTGCTGCAGCACCTGCAGGATCCGGAGGTGCTTCGGCGGCCTGAGATCCGGCGGCCGCTGACCGGGCTCGACGACACGCTCCGGGAGGCGCACGAGCTTGTGTTGTCGTGCCAGGACAAGAGCGCCGTGTACAGGTTGGTGATGGCAGGGCGGCAGGCTGAGAGGTTCAGAGATGTTCAGAGCAGGATCGACTCGTACCTCCTCGTCTTCCCATTCATCAGCCACATAGACATCACTCGTCGTCTCGATCGTATCTACAACATCCTGCTTCCAACCAACACGCCCGGACCATCTACGCCTGCTTTCCCCGTGCCCCCAAATCCAGTCCCTGCCGCTCAGGTATACATTGAAATGGGAAGACTCAAGCATTCAATTGTTTGTACTTGTACTACTACCAACTGCAACTCTTTTGATTTGGTATTCAGTTCCTCTTTTCTTTCCGATGTGTATTCATCGATATACTAG
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| Protein seq | MIMQAAMTAQQNKKECEQLARRVFTIAELLQHLQDPEVLRRPEIRRPLTGLDDTLREAHELVLSCQDKSAVYRLVMAGRQAERFRDVQSRIDSYLLVFPFISHIDITRRLDRIYNILLPTNTPGPSTPAFPVPPNPVPAAQVYIEMGRLKHSIVCTCTTTNCNSFDLVFSSSFLSDVYSSIY |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.078620 | 0.0 | 0.0 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_11g0666100 | RBH | 0.119349 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os11g44430 | SBH | 0.170733 | 0.277123 | 0.084260 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os11g0666100 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_11g0023020 | SBH | 0.0 | 1.673250 | 0.0 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_11g0023020 | RBH | 0.028885 | 0.0 | 0.072533 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_11g0022720 | SBH | 0.000000 | 6.946922 | 0.193026 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_11g0022420 | SBH | 0.0 | 0.020354 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_11g0022670 | SBH | 0.0 | 0.000000 | 0.0 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_11G0400400 | SBH | 0.028851 | 0.502086 | 0.0511855 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_11g0023550 | SBH | 0.0 | 0.0 | 0.0 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_11G0422000 | SBH | 0.0640055 | 5.37775 | 0.1425045 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_11g0023110 | SBH | 0.000000 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_11g0023320 | SBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_11g0022890 | RBH | 0.0 | 0.000000 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_11g0022440 | SBH | 0.0 | 0.0 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_11g0022450 | SBH | 0.0 | 0.000000 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_11G022750 | SBH | 0.0 | 0.613823 | 0.0 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_11g0023190 | SBH | 0.0 | 0.0 | 0.0 |
