Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsNaBo_11g0023190 | OGI:11075910 | 16/16 | NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | Chr11:28878880-28879881 | ||||||||
| Gene Symbol | RLCK345, OsRLCK345, RLCK344, OsRLCK344 | ||||||||||
| DNA seq | TTAAATAAAGTGGGCATGAGTTCTCAAAAAAAAAAAGACGAGTAGAAGCTTTTTGTCCTCCTTTTCCTTCTGGAACGGCCGCAGGAGGTGGCGCCGCTTCTCGACCAGCACACTACAGTAGCCATATAGTGGAACAATGTGCTTGTAGCGGATGGGGGAGAGGACTGTGATCTCTCTCATGAACTCCTCCTTAGCCTGAACTGGGTAGTGCTTGATGGCCACCTCCCGCCCATCTGGAAGCCTTCCCATGTACACCTTGGTGAAGCCACCTTCATCGATCTTGCTGTCAGGGGCAAAGTTGTTGCTTGCCTTTGCGAGCTCCTTGAAACTAAACTCCATGGTGTTCCTTCCAATACATCTTAGCAGCATCCTAGTATAGAGATGTGCACATAACGGAAGAAGAGAAAAATTAGAGTTCAGTTCTAAGCTTCCCTTCGGAGCCAAGTACAAAGTGCAATTGAAAGTTTGAGGTTATAAttatgtatgcatttgaatgtgtacctgggaggctgggacggggatttgaggcatggagataggagacacagatggcccggtcatgtcattcggaagcaggatgttgtagattcgatcgacacggcgagtgatgtccatgtggctgataacagggaagaggaggaggtaggagtcgatcctgctctgaacatctctgaacttgtcagcctgccttccggccatcaccaacctgtacacggcgctcttggcctggcatgccatcacaagctcgtgcgccttccggagagtgtcgtcgagcccggtcagcggccgccggatctcaggccgccgcagcacatcgggatcctgcaggtgctgcagcagctcggcgatcgtgaagacgcggcgggcgagctgctcgcactctttcTtgttctgctgagccgtcatcgcaacctgcatgatcatggtgatgaggccgccgatgtccgccccgaccagctgcgccaccgtcgccgcctgacccagcccgCcccacagtgccat
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| CDS seq | atggcactgtgggGcgggctgggtcaggcggcgacggtggcgcagctggtcggggcggacatcggcggcctcatcaccatgatcatgcaggttgcgatgacggctcagcagaacaAgaaagagtgcgagcagctcgcccgccgcgtcttcacgatcgccgagctgctgcagcacctgcaggatcccgatgtgctgcggcggcctgagatccggcggccgctgaccgggctcgacgacactctccggaaggcgcacgagcttgtgatggcatgccaggccaagagcgccgtgtacaggttggtgatggccggaaggcaggctgacaagttcagagatgttcagagcaggatcgactcctacctcctcctcttccctgttatcagccacatggacatcactcgccgtgtcgatcgaatctacaacatcctgcttccgaatgacatgaccgggccatctgtgtctcctatctccatgcctcaaatccccgtcccagcctcccagGGAAGCTTAGAACTGAACTCTAATTTTTCTCTTCTTCCGTTATGTGCACATCTCTATACTAGGATGCTGCTAAGATGTATTGGAAGGAACACCATGGAGTTTAGTTTCAAGGAGCTCGCAAAGGCAAGCAACAACTTTGCCCCTGACAGCAAGATCGATGAAGGTGGCTTCACCAAGGTGTACATGGGAAGGCTTCCAGATGGGCGGGAGGTGGCCATCAAGCACTACCCAGTTCAGGCTAAGGAGGAGTTCATGAGAGAGATCACAGTCCTCTCCCCCATCCGCTACAAGCACATTGTTCCACTATATGGCTACTGTAGTGTGCTGGTCGAGAAGCGGCGCCACCTCCTGCGGCCGTTCCAGAAGGAAAAGGAGGACAAAAAGCTTCTACTCGTCTTTTTTTTTTTGAGAACTCATGCCCACTTTATTTAA
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| Protein seq | MALWGGLGQAATVAQLVGADIGGLITMIMQVAMTAQQNKKECEQLARRVFTIAELLQHLQDPDVLRRPEIRRPLTGLDDTLRKAHELVMACQAKSAVYRLVMAGRQADKFRDVQSRIDSYLLLFPVISHMDITRRVDRIYNILLPNDMTGPSVSPISMPQIPVPASQGSLELNSNFSLLPLCAHLYTRMLLRCIGRNTMEFSFKELAKASNNFAPDSKIDEGGFTKVYMGRLPDGREVAIKHYPVQAKEEFMREITVLSPIRYKHIVPLYGYCSVLVEKRRHLLRPFQKEKEDKKLLLVFFFLRTHAHFI |
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| Function | Protein MID1-COMPLEMENTING ACTIVITY 2 [UniProtKB/Swiss-Prot:Q3EBY6] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNaBo_11g0023190 | OsNaBo_11g0023190.01 | Chr11 | 28878880 | 28879881 | - | NAM | ||
| CDS seq | atggcactgtgggGcgggctgggtcaggcggcgacggtggcgcagctggtcggggcggacatcggcggcctcatcaccatgatcatgcaggttgcgatgacggctcagcagaacaAgaaagagtgcgagcagctcgcccgccgcgtcttcacgatcgccgagctgctgcagcacctgcaggatcccgatgtgctgcggcggcctgagatccggcggccgctgaccgggctcgacgacactctccggaaggcgcacgagcttgtgatggcatgccaggccaagagcgccgtgtacaggttggtgatggccggaaggcaggctgacaagttcagagatgttcagagcaggatcgactcctacctcctcctcttccctgttatcagccacatggacatcactcgccgtgtcgatcgaatctacaacatcctgcttccgaatgacatgaccgggccatctgtgtctcctatctccatgcctcaaatccccgtcccagcctcccagGGAAGCTTAGAACTGAACTCTAATTTTTCTCTTCTTCCGTTATGTGCACATCTCTATACTAGGATGCTGCTAAGATGTATTGGAAGGAACACCATGGAGTTTAGTTTCAAGGAGCTCGCAAAGGCAAGCAACAACTTTGCCCCTGACAGCAAGATCGATGAAGGTGGCTTCACCAAGGTGTACATGGGAAGGCTTCCAGATGGGCGGGAGGTGGCCATCAAGCACTACCCAGTTCAGGCTAAGGAGGAGTTCATGAGAGAGATCACAGTCCTCTCCCCCATCCGCTACAAGCACATTGTTCCACTATATGGCTACTGTAGTGTGCTGGTCGAGAAGCGGCGCCACCTCCTGCGGCCGTTCCAGAAGGAAAAGGAGGACAAAAAGCTTCTACTCGTCTTTTTTTTTTTGAGAACTCATGCCCACTTTATTTAA
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| Protein seq | MALWGGLGQAATVAQLVGADIGGLITMIMQVAMTAQQNKKECEQLARRVFTIAELLQHLQDPDVLRRPEIRRPLTGLDDTLRKAHELVMACQAKSAVYRLVMAGRQADKFRDVQSRIDSYLLLFPVISHMDITRRVDRIYNILLPNDMTGPSVSPISMPQIPVPASQGSLELNSNFSLLPLCAHLYTRMLLRCIGRNTMEFSFKELAKASNNFAPDSKIDEGGFTKVYMGRLPDGREVAIKHYPVQAKEEFMREITVLSPIRYKHIVPLYGYCSVLVEKRRHLLRPFQKEKEDKKLLLVFFFLRTHAHFI
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | 0.0 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_11g0666200 | SBH | 0.437268 | 0.359219 | 0.285375 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os11g44460 | RBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os11g0666200 | SBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_11g0022930 | RBH | 0.0 | 0.0 | 0.0 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_11g0022970 | RBH | 0.0 | 0.839027 | 0.0 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_11g0022720 | SBH | 0.000000 | 6.946922 | 0.193026 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_11g0022350 | RBH | 0.000000 | 0.000000 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_11g0022670 | SBH | 0.0 | 0.000000 | 0.0 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_11G0401400 | SBH | 0.07676 | 14.955124 | 0.1836165 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_11g0023530 | RBH | 0.0 | 0.0 | 0.0 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_11G0422000 | SBH | 0.0640055 | 5.37775 | 0.1425045 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_11g0023060 | RBH | 0.0 | 0.157806 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_11g0023320 | SBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_11g0022870 | RBH | 0.000000 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_11g0022650 | SBH | 0.0 | 0.0 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_11g0022450 | SBH | 0.0 | 0.000000 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_11G022750 | RBH | 0.0 | 0.613823 | 0.0 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_11g0023260 | SBH | 0.0 | 0.0 | 0.0 |
