Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsPr106_11g0022680 | OGI:11076040 | 6/16 | PR 106 | Os127742RS1 | Gramene(+IsoSeq) | Chr11:29257280-29258825 | ||||||||
| Gene Symbol | UBP4-1, OsUBP4-1, UBP4-3, OsUBP4-3, UBP4-7, OsUBP4-7 | ||||||||||
| DNA seq | gggtatggcggttatcccccgatcagggatgttcatgagagatcgatcactgtagcgatcgccctaaacaaaatatctctttgccgactttaggtttagccgcaagatcatattttgtgttcacactaacaattatttctttttctcatcttttcgccttaggtccgtcaaaacgcatatcgcccgcgcccctgcacccccgacgcaggcaccgcttcggtcatcgcaggcggcggcgcggcgaaaatcgctgtcggctccggatcaggatcgccggcggacctcctcctccggcccccacctccgccgccactccgccctcctatctactccaccggcggcttgccgacccgaagcccccccatccccccagcccccgacgcaggcaccgcatcagtcatcgaatgcggcggcgcggccggcggcgctgccagcatcaggtctgacgcaaaagctcccgactcgcaggcaccgcatcaccgcatctggttgttgtattctctgatttagccttaaccttgtgctatggtgctgtgtgtatgcatggttaaattcttctcgataagcctgaagtatgtagtgttccttttggatattatgtataaacgacatatcttatatttggtgcttgtaccgtaggtgaggtctgtcataatatgcagctattgctttcactgagagcgcacatgctagtaaactagtattttagatgcaaatattagtgctataagaaatatttttgctagtttttcagttgttacttaattatgaacacatgtactttagatccagaccactttatgaatcagcacatttggtgcaaaccatttttattatcgactacttatcaatgtccattggctacaaaatgcagtaggacaatatgacacctcaatgctgaaaagtctatctgagattcataagcttgagcttatcccgaaaggaaatgaagattatgtcgcactacatggttatctggaagcctttctaaaagtggaacagttggacccagaagacaatgtggtgagtgccccttaggaacagctgttatgctcttggcttcactgcttattgaatagccttctttgcaatcttcatttcttttgttaaccaaaataggttgatgtgcgtatgtatgatgtggaaacattaccttcgcaaaatatcaccacaatacgtggcttgctttggattctgaattggaagttactgttgttgcataactgatgaccacttttttctctgctttgcattcaggtactgcccatgctgcaaaaagcatcaacaagcgatgaagaaattagatctgtggaggctaccggaagttctggtcattcatctcaaaaggttctcgtacacccaattcacaagaaataagcttgagactatctttttcaatgtcttgataatgagcaaggctggttggtttctgcagcatgaagaagggaagggatggtacaagtttgatgatgagtgcgtgagacctataactgaagacagtataaagacacctgctgcttatgtgctgttctacacacgagaatga
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| CDS seq | atgaagaaattagatctgtggaggctaccggaagttctggtcattcatctcaaaaggttctcgtacacccaattcacaagaaataagcttgagactatctttttcaatgtcttgataatgagcaaggctggttggtttctgcagcatgaagaagggaagggatggtacaagtttgatgatgagtgcgtgagacctataactgaagacagtataaagacacctgctgcttatgtgctgttctacacacgagaa |
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| Protein seq | MKKLDLWRLPEVLVIHLKRFSYTQFTRNKLETIFFNVLIMSKAGWFLQHEEGKGWYKFDDECVRPITEDSIKTPAAYVLFYTRE |
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| Function | Ubiquitin carboxyl-terminal hydrolase 8 [UniProtKB/Swiss-Prot:Q9C585] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsPr106_11g0022680 | OsPr106_11g0022680.01 | Chr11 | 29257280 | 29258825 | + | NAM | ||
| CDS seq | atgaagaaattagatctgtggaggctaccggaagttctggtcattcatctcaaaaggttctcgtacacccaattcacaagaaataagcttgagactatctttttcaatgtcttgataatgagcaaggctggttggtttctgcagcatgaagaagggaagggatggtacaagtttgatgatgagtgcgtgagacctataactgaagacagtataaagacacctgctgcttatgtgctgttctacacacgagaa
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| Protein seq | MKKLDLWRLPEVLVIHLKRFSYTQFTRNKLETIFFNVLIMSKAGWFLQHEEGKGWYKFDDECVRPITEDSIKTPAAYVLFYTRE |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | 0.0 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_11g0667400 | RBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os11g44540 | RBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os11g0667400 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_11g0013730 | SBH | 1.422450 | 9.132038 | 6.856596 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_11g0023100 | SBH | 0.0 | 0.0 | 0.0 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_11g0013630 | SBH | 1.805860 | 7.528309 | 11.370018 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_11g0018470 | RBH | 0.0 | 0.000000 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Minghui 63 | MH63RS3 | HZAU | NA | NA | NA | NA | NA |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_11g0019330 | RBH | 0.0 | 0.000000 | 0.0 |
| Zhenshan 97 | ZS97RS3 | HZAU | NA | NA | NA | NA | NA |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_11g0023210 | RBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_11g0019270 | RBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_11g0013480 | SBH | 6.608059 | 21.149843 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_11g0018460 | RBH | 0.0 | 0.0 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_11g0013650 | SBH | 0.368717 | 6.211764 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_11G013470 | SBH | 0.748661 | 2.277860 | 3.198071 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_11g0013670 | SBH | 1.338127 | 24.430273 | 12.386042 |
