Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLima_11g0017770 | OGI:11010520 | 16/16 | LIMA | Os127564RS1 | Gramene(+IsoSeq) | Chr11:22977121-22980053 | ||||||||
| Gene Symbol | XA21, Xa21*, Xa21, OsXA21 | ||||||||||
| DNA seq | acgtccggccacggccagcactgcacatgggtgggtgttgtgtgcggccgccggcacccgcacagggtggtgaagctgcggctgcgctcgtccaacctgaccgggatcatctcgccgtcgctggggaacctatccttcctcaggacgctgcaactcagcaacaaccacctgtccggcaagataccccaggagctcagccgtctcagcaggctccagcagctggtactgaatttcaacagcctatcGggtgagattccagcttctttgggcaatctaaccagtctctcggttcttgagctgactaacaatacactgtctggttctatcccttcatccctgggcaagctcaccggcctctataatcttgcactggctgaaaatatgctgtctggttccatccctttgtctttcggccaattgcgcagattatctttccttagcttagccttcaaccacttaagtgaagcaatcccagatcctatttggaacatctcctctctcaccatatttgaagtcgtgtccaacaacctaactggtacactgcctgcaaatgcattcagtaatcttcctaatctgcaggaggttttcatgtactacaaccattttcatggtcctatccctgcatcgattggtaatgcttccagcatctcaatatttaccattggtttaaactcttttagcggtgttgttccaccggagattggaaggatgagaaatcttcagagactAGagcttccagaaactcttttggaagctgaagaaacaaatgattggaaattcatgacggcattaacgaattgctccaatcttcaagaagtggaactgacaggttgtaaatttggtggagtcctccctgattctgtttccaatctttcctcttcgctagtatatctccacattagagataacaaaatttcagggagcttacctagagatatcggtaatctcgttaacttaaaatctcttgttctcgctaacaactccttgacaggatcccttcccacttccttcagcaagcttagaaatttacatcgtctcgaactttttaacaacaaaataagtggttctctcccattaaccattggtaatcttacacaactaactaatatggaactccactttaatgccttcggtggtacaataccaagcacacttggaaacctgaccaagttgattcaaataaatcttgaccataataactttatagggcaaattcccattgaaatatttagcattcccgcactctctcaaattttggatgtgtctcataataacttggagggatcagtaccaaaagaaatagagaaactcaaaaatattgtcgaattccatgctgattcgaacaaattatcgggtgagatccctagcaccattggtgaatgccaacttctgcagcatcttttcctgcaaaacaatttcttaaatggtagcatcccaatagctctgactcaattgaaaggtcttgacacacttgatctctcaggtaacaatttgtcaggtcagataccaaggtccttaggggacatacctctgctccactcgctgaacctttcgttcaacagattccacggtgaagtgccaaccaatggtgtttttgcaaatgcttctgaaatttacatccaaggcaatgccaatctttgtggtggcatacctgaactacatcttccaacgtgttccttaaaatcaagaaacaaaaagaaacatcaaattctgctgttggtggttgttatctgtctcgtttcgacacttgccgtctttttgttactctacatgcttctaacctgccataAGagaagaaagaaagaagtccctacaacgacatccatgcgaggccacccaatgatcacttacaagcagctggtaaaagcaacggatggtttttcgtccagccatttgctgggctctggAtcctttggctctgttttcaaaggagaatttgatagccaagattgtgaaagcacaagtcttgttgccgtgaaggtactaaagctggaaactcctaaggcactcaagagtttcatggccgaatgcgaaacactgcgaaatactcgacaccgcaatcttgtcaagatagttacaatttgctcgagcatcgataacagagggaatgatttcAaagcaattgtgtatgacttcatgcccaatggcagtctggaagattggctacaccctgaaacaaatgatcaagcagagcaaaggcacttgactctgcatcagagagtgaccatactacttgatgttgcatgtgcattggaccatcttcacttccatggccctgaacctattgtacactgtgatattaaatcaagcaatgtgttgttagatgctgatatggtagcccatgttggagactttggacttgcaagaatacttattgagggaagctcattgatgcaacagtcaacaagttcgatggtaatcaGggggacaattggttacgcagcaccaggttaagcctaaactgtttatgtctacctcatttcatttcttcttttttgtggtttcttctctctagtgttttatgactatgaaataatttttgctactggaaaacagagtatggtgtcgggaacactgcctcgacacatgGAgatatttacagttatggaattctagtgttggaaacagtaaccGggaagcggccgacagatagtacattcagaactggattgagcctccgtcagtacgttgaaccgggtctacatggtagactaatggatgttgttgacaggaagcttggtttggattccgagaaatggcttcaggctcgaaatatttcgccatgcagcagtattagtgaatgccttgtttcactgcttagacttgggttgtcttgctctcaggaattgccatcgagtagaatgcaagccggaaatgtcatcaatgaactgcgtgccatcaaagagtccctctcgatgtcatccggcatgtga
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| CDS seq | atgctgtctggttccatccctttgtctttcggccaattgcgcagattatctttccttagcttagccttcaaccacttaagtgaagcaatcccagatcctatttggaacatctcctctctcaccatatttgaagtcgtgtccaacaacctaactggtacactgcctgcaaatgcattcagtaatcttcctaatctgcaggaggttttcatgtactacaaccattttcatggtcctatccctgcatcgattggtaatgcttccagcatctcaatatttaccattggtttaaactcttttagcggtgttgttccaccggagattggaaggatgagaaatcttcagagactAGagcttccagaaactcttttggaagctgaagaaacaaatgattggaaattcatgacggcattaacgaattgctccaatcttcaagaagtggaactgacaggttgtaaatttggtggagtcctccctgattctgtttccaatctttcctcttcgctagtatatctccacattagagataacaaaatttcagggagcttacctagagatatcggtaatctcgttaacttaaaatctcttgttctcgctaacaactccttgacaggatcccttcccacttccttcagcaagcttagaaatttacatcgtctcgaactttttaacaacaaaataagtggttctctcccattaaccattggtaatcttacacaactaactaatatggaactccactttaatgccttcggtggtacaataccaagcacacttggaaacctgaccaagttgattcaaataaatcttgaccataataactttatagggcaaattcccattgaaatatttagcattcccgcactctctcaaattttggatgtgtctcataataacttggagggatcagtaccaaaagaaatagagaaactcaaaaatattgtcgaattccatgctgattcgaacaaattatcgggtgagatccctagcaccattggtgaatgccaacttctgcagcatcttttcctgcaaaacaatttcttaaatggtagcatcccaatagctctgactcaattgaaaggtcttgacacacttgatctctcaggtaacaatttgtcaggtcagataccaaggtccttaggggacatacctctgctccactcgctgaacctttcgttcaacagattccacggtgaagtgccaaccaatggtgtttttgcaaatgcttctgaaatttacatccaaggcaatgccaatctttgtggtggcatacctgaactacatcttccaacgtgttccttaaaatcaagaaacaaaaagaaacatcaaattctgctgttggtggttgttatctgtctcgtttcgacacttgccgtctttttgttactctacatgcttctaacctgccataAGagaagaaagaaagaagtccctacaacgacatccatgcgaggccacccaatgatcacttacaagcagctggtaaaagcaacggatggtttttcgtccagccatttgctgggctctggAtcctttggctctgttttcaaaggagaatttgatagccaagattgtgaaagcacaagtcttgttgccgtgaaggtactaaagctggaaactcctaaggcactcaagagtttcatggccgaatgcgaaacactgcgaaatactcgacaccgcaatcttgtcaagatagttacaatttgctcgagcatcgataacagagggaatgatttcAaagcaattgtgtatgacttcatgcccaatggcagtctggaagattggctacaccctgaaacaaatgatcaagcagagcaaaggcacttgactctgcatcagagagtgaccatactacttgatgttgcatgtgcattggaccatcttcacttccatggccctgaacctattgtacactgtgatattaaatcaagcaatgtgttgttagatgctgatatggtagcccatgttggagactttggacttgcaagaatacttattgagggaagctcattgatgcaacagtcaacaagttcgatggtaatcaGggggacaattggttacgcagcaccagagtatggtgtcgggaacactgcctcgacacatgGAgatatttacagttatggaattctagtgttggaaacagtaaccGggaagcggccgacagatagtacattcagaactggattgagcctccgtcagtacgttgaaccgggtctacatggtagactaatggatgttgttgacaggaagcttggtttggattccgagaaatggcttcaggctcgaaatatttcgccatgcagcagtattagtgaatgccttgtttcactgcttagacttgggttgtcttgctctcaggaattgccatcgagtagaatgcaagccggaaatgtcatcaatgaactgcgtgccatcaaagagtccctctcgatgtcatccggcatgtga
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| Protein seq | MLSGSIPLSFGQLRRLSFLSLAFNHLSEAIPDPIWNISSLTIFEVVSNNLTGTLPANAFSNLPNLQEVFMYYNHFHGPIPASIGNASSISIFTIGLNSFSGVVPPEIGRMRNLQRLELPETLLEAEETNDWKFMTALTNCSNLQEVELTGCKFGGVLPDSVSNLSSSLVYLHIRDNKISGSLPRDIGNLVNLKSLVLANNSLTGSLPTSFSKLRNLHRLELFNNKISGSLPLTIGNLTQLTNMELHFNAFGGTIPSTLGNLTKLIQINLDHNNFIGQIPIEIFSIPALSQILDVSHNNLEGSVPKEIEKLKNIVEFHADSNKLSGEIPSTIGECQLLQHLFLQNNFLNGSIPIALTQLKGLDTLDLSGNNLSGQIPRSLGDIPLLHSLNLSFNRFHGEVPTNGVFANASEIYIQGNANLCGGIPELHLPTCSLKSRNKKKHQILLLVVVICLVSTLAVFLLLYMLLTCHKRRKKEVPTTTSMRGHPMITYKQLVKATDGFSSSHLLGSGSFGSVFKGEFDSQDCESTSLVAVKVLKLETPKALKSFMAECETLRNTRHRNLVKIVTICSSIDNRGNDFKAIVYDFMPNGSLEDWLHPETNDQAEQRHLTLHQRVTILLDVACALDHLHFHGPEPIVHCDIKSSNVLLDADMVAHVGDFGLARILIEGSSLMQQSTSSMVIRGTIGYAAPEYGVGNTASTHGDIYSYGILVLETVTGKRPTDSTFRTGLSLRQYVEPGLHGRLMDVVDRKLGLDSEKWLQARNISPCSSISECLVSLLRLGLSCSQELPSSRMQAGNVINELRAIKESLSMSSGM |
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| Function | Receptor kinase-like protein Xa21 [UniProtKB/Swiss-Prot:Q1MX30] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLima_11g0017770 | OsLima_11g0017770.01 | Chr11 | 22977121 | 22980053 | + | NAM | ||
| CDS seq | atgctgtctggttccatccctttgtctttcggccaattgcgcagattatctttccttagcttagccttcaaccacttaagtgaagcaatcccagatcctatttggaacatctcctctctcaccatatttgaagtcgtgtccaacaacctaactggtacactgcctgcaaatgcattcagtaatcttcctaatctgcaggaggttttcatgtactacaaccattttcatggtcctatccctgcatcgattggtaatgcttccagcatctcaatatttaccattggtttaaactcttttagcggtgttgttccaccggagattggaaggatgagaaatcttcagagactAGagcttccagaaactcttttggaagctgaagaaacaaatgattggaaattcatgacggcattaacgaattgctccaatcttcaagaagtggaactgacaggttgtaaatttggtggagtcctccctgattctgtttccaatctttcctcttcgctagtatatctccacattagagataacaaaatttcagggagcttacctagagatatcggtaatctcgttaacttaaaatctcttgttctcgctaacaactccttgacaggatcccttcccacttccttcagcaagcttagaaatttacatcgtctcgaactttttaacaacaaaataagtggttctctcccattaaccattggtaatcttacacaactaactaatatggaactccactttaatgccttcggtggtacaataccaagcacacttggaaacctgaccaagttgattcaaataaatcttgaccataataactttatagggcaaattcccattgaaatatttagcattcccgcactctctcaaattttggatgtgtctcataataacttggagggatcagtaccaaaagaaatagagaaactcaaaaatattgtcgaattccatgctgattcgaacaaattatcgggtgagatccctagcaccattggtgaatgccaacttctgcagcatcttttcctgcaaaacaatttcttaaatggtagcatcccaatagctctgactcaattgaaaggtcttgacacacttgatctctcaggtaacaatttgtcaggtcagataccaaggtccttaggggacatacctctgctccactcgctgaacctttcgttcaacagattccacggtgaagtgccaaccaatggtgtttttgcaaatgcttctgaaatttacatccaaggcaatgccaatctttgtggtggcatacctgaactacatcttccaacgtgttccttaaaatcaagaaacaaaaagaaacatcaaattctgctgttggtggttgttatctgtctcgtttcgacacttgccgtctttttgttactctacatgcttctaacctgccataAGagaagaaagaaagaagtccctacaacgacatccatgcgaggccacccaatgatcacttacaagcagctggtaaaagcaacggatggtttttcgtccagccatttgctgggctctggAtcctttggctctgttttcaaaggagaatttgatagccaagattgtgaaagcacaagtcttgttgccgtgaaggtactaaagctggaaactcctaaggcactcaagagtttcatggccgaatgcgaaacactgcgaaatactcgacaccgcaatcttgtcaagatagttacaatttgctcgagcatcgataacagagggaatgatttcAaagcaattgtgtatgacttcatgcccaatggcagtctggaagattggctacaccctgaaacaaatgatcaagcagagcaaaggcacttgactctgcatcagagagtgaccatactacttgatgttgcatgtgcattggaccatcttcacttccatggccctgaacctattgtacactgtgatattaaatcaagcaatgtgttgttagatgctgatatggtagcccatgttggagactttggacttgcaagaatacttattgagggaagctcattgatgcaacagtcaacaagttcgatggtaatcaGggggacaattggttacgcagcaccagagtatggtgtcgggaacactgcctcgacacatgGAgatatttacagttatggaattctagtgttggaaacagtaaccGggaagcggccgacagatagtacattcagaactggattgagcctccgtcagtacgttgaaccgggtctacatggtagactaatggatgttgttgacaggaagcttggtttggattccgagaaatggcttcaggctcgaaatatttcgccatgcagcagtattagtgaatgccttgtttcactgcttagacttgggttgtcttgctctcaggaattgccatcgagtagaatgcaagccggaaatgtcatcaatgaactgcgtgccatcaaagagtccctctcgatgtcatccggcatgtga
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| Protein seq | MLSGSIPLSFGQLRRLSFLSLAFNHLSEAIPDPIWNISSLTIFEVVSNNLTGTLPANAFSNLPNLQEVFMYYNHFHGPIPASIGNASSISIFTIGLNSFSGVVPPEIGRMRNLQRLELPETLLEAEETNDWKFMTALTNCSNLQEVELTGCKFGGVLPDSVSNLSSSLVYLHIRDNKISGSLPRDIGNLVNLKSLVLANNSLTGSLPTSFSKLRNLHRLELFNNKISGSLPLTIGNLTQLTNMELHFNAFGGTIPSTLGNLTKLIQINLDHNNFIGQIPIEIFSIPALSQILDVSHNNLEGSVPKEIEKLKNIVEFHADSNKLSGEIPSTIGECQLLQHLFLQNNFLNGSIPIALTQLKGLDTLDLSGNNLSGQIPRSLGDIPLLHSLNLSFNRFHGEVPTNGVFANASEIYIQGNANLCGGIPELHLPTCSLKSRNKKKHQILLLVVVICLVSTLAVFLLLYMLLTCHKRRKKEVPTTTSMRGHPMITYKQLVKATDGFSSSHLLGSGSFGSVFKGEFDSQDCESTSLVAVKVLKLETPKALKSFMAECETLRNTRHRNLVKIVTICSSIDNRGNDFKAIVYDFMPNGSLEDWLHPETNDQAEQRHLTLHQRVTILLDVACALDHLHFHGPEPIVHCDIKSSNVLLDADMVAHVGDFGLARILIEGSSLMQQSTSSMVIRGTIGYAAPEYGVGNTASTHGDIYSYGILVLETVTGKRPTDSTFRTGLSLRQYVEPGLHGRLMDVVDRKLGLDSEKWLQARNISPCSSISECLVSLLRLGLSCSQELPSSRMQAGNVINELRAIKESLSMSSGM
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_11g0559200 | RBH | 0.222809 | 0.083266 | 1.098986 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os11g35500 | RBH | 0.150230 | 0.050907 | 0.277533 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os11g0559200 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_11g0017830 | SBH | 0.128877 | 6.788608 | 1.696541 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_11g0017540 | SBH | 0.023507 | 0.0 | 0.379464 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_11g0004950 | SBH | 0.351912 | 0.244407 | 1.702016 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_11g0017440 | SBH | 0.021506 | 0.098889 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_11g0017320 | SBH | 0.0 | 0.0 | 0.145598 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_11G0327400 | RBH | 0.0125645 | 0.364583 | 0 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_11g0018270 | SBH | 0.040696 | 0.0 | 0.079613 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_11G0344300 | SBH | 0.099182 | 0.4184825 | 0.0564465 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_11g0018080 | SBH | 0.068635 | 0.000000 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_11g0017770 | RBH | 0.129088 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_11g0017710 | SBH | 0.429796 | 0.000000 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_11g0017090 | RBH | 0.0 | 0.0 | 0.000000 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_11g0017660 | SBH | 0.123759 | 0.667272 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_11G017720 | SBH | 0.042523 | 0.0 | 0.112282 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_11g0017600 | RBH | 0.586104 | 8.228262 | 0.891242 |
