Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLima_07g0010340 | OGI:07004740 | 16/16 | LIMA | Os127564RS1 | Gramene(+IsoSeq) | Chr07:11395366-11403384 | ||||||||
| Gene Symbol | RLCK226, OsRLCK226, - | ||||||||||
| DNA seq | tgaagtgaggcagctttctagccaatcttgacaaaaaaaaacagtaaatacacttcgttttttcataagaagttctagaaaaagaaacgtgaaaacattttacatagcatttgttgctatttttatgtcactacaaactgttctccggtttacagatttctggttgagaaaaatgtacatgtatatcctaatatgattttctgatgttcttagttctgcatagcttctagtatatcatcttccccctgacagttcagagaatgtgccaatactcgtaaactgtgggcataacatgtctggtgattcaaatcctttgctctgcatcaaagcctgcatagtaaagctaaaatgccttgatgaaatctctggtattggtgtatcaccttcaaggtactccatgacttgctgcatgctaggtcttgcattagtaaatgggtgtgagcatagaagacctagctttaggacaagacaaacctcatcgatattaaaatcagcttggagtctactgtccatggcctcgattagtgagctattatgcagaaactgaagaacccaatcgaacaaactatgctggtttccctgtgagtctttcttaataggtctttgcccacaggtgacctcaagaagaaatatgccaaatgcaaagacatctgtagaagtggatgctctccctgtgcgtaccaattctggagctaagtaccccatggttccaaccatgtgagtggtttgtggatcagtcccatggtcatataaccttgaaagaccaaagtcacctaattttccattcatttcactatctagaagaacattacttggtttaatatctcggtgtatgacaaccttttcccacttctcatggagatagagcaagccaaatgcgacacccttgatgacatgaaacctctcggcccaattcaataatggttttccatcttcaggatacaaatacttattaaggctgccatttgacatatagtcatatactagaaggagttgaccttttcgccgacaataaccaagtagaggcactaggttgcggtgtctgagcttaccaatactgacaacctcagcaatgaactctttcatcccttgtgtagactcgtgggacaccctcttaatagctactggaactttagacttctgaagaacgcctttataaactttgccaaacccacctactcctagtaagttatttttattaaacccttccgtagcatggtacatgtctttgaaggagaatcgatgtggcccaaaatcaacctcccaatcttcccgtagctccatatatctcaatcttctacgaacaagtaaaacaacaacggtaccagcagcaaggacaaatattgctgtggctataggcagggtgatatctaaggtcttggaacgaggctttgggccaaggcgtggtagctttgggagtctggagatgtctatagctggagcaggactattcatagcaaaactccagccaagtacgcaatgtcttgtgctaatcgcacctgttgtggctgagaaaccgatgtatgattgatctctaagaacatctgagaggttataggaagatgaaagcagtggtcttacagatttgggtgctccaagatgagccaaggtaacgttgatttgtgcagactctccatcatagtcagcccatacctgcatggccttgccactgatcagagtcaagttgttgaagaaaccactcttgtcatcgtagtatccagtgtggtgagcttgcaaagagatgaggctgttgatgttgattccaacgtggttgttgtcgatgtctttgaactcatcattttgggtagtatcaagctcgaccgcgaacatgtgattgcttctgttgccatcgttcctactattgaggagacctatatactgtgcccatgtattggaaaggttcttgcttggagcaacaaagaaggccatgccatctgcacttatatcatcatgcactgagaggattgcaaacacaaagctgagtgagaatgattgcactgtgctgttggaaaatttgcggaagttttgtggagttggataaaatgcgtgtcctagattaattgtgtcattggtgagctcaaggatgccgtctggtgtgaccatggcatttccatcaagggtgaggttaacaccagaaaagccatggtagacgaactcgccatggctagttgtgaaagcttcaaggataagaacaagggagaggatggtgcataggagggaggacatgggctttgtccaagacatgtctgaagctcattgagtagacaaagtttaagacatagaagccatggatactttgggtcctctctcttcccctctatgcctctctgattatatatctgtctgcatcctagggggttggggcttttcctctttctttttttttttggcaaaacatgacctgactttttcttttgaaagaagaaacatgacctgacatcagtctgtgctgcaaatatctttctacccatacaacataatatggttttgataagcttctggtttacactatctaattactacgttttttatggtcaccaccttagtgcacaaatttgtactaaaaagggtggtaactcttaaaaaacactcttaattattagaatgtattgcatctcttctaaaaaatctacaatcaaatttctatttagagaaatcaaatttaataaaacattgacctattcaaactattacagtggtttaaggtacaattatacactagtacagaacactacatctgtaagggctcaaaaatcacatctataatggttggactaaccattacagaccaacagttacagacgtgaagactcatttgtaagggctagagagccgttatagatgaaagttatctgtaacggctcaaaacgtggagccgttacatatgtgaaaattcagcttaaaaaaaagataaactaaactcgtaagctgttacatatgtggagaattataatagaaagaacaaaaaaacatccaatctggtttcatccctgctagcctcctgctattccggccatccctgctctaccgatggccactgcacggcagcacatcgacgtcgcgttgcaggaatgtaatgatgatgtggactgtggtggcacggaagagcgggagggggaagggttgtgcggccggggcaatgaggaaaccattacagataaaggagcttacatctgtaacggctcttgattaggagccattatagataaggcggcttcagtaacagctcaagaatgttctggtcatctataacagtagctaatgtcgcccgttacagatgacataatctataacggttttattggacccgttacagatgtaagaatctgtgctagtgtagaagatgttgacatcacataacaaattattccatagaaattaattgcgagaatggaataccacaaaaggaccatcagattccatgcgacttacaaggtgctgcctaactttgaaacttcacctggcaccttcaattccatgtgacaggttttgtctttgtggaaattgatttcttgatttggacagctcagttgtgttcttccatggaaaaggggcctggtttagatcccaactttttcttcaaacttccaacttttccatcacatcaaaacttttctacacacacaaacttccaacttttccgtcacatcgttctaatttcaatcaaacttttaattttggcgtgaactaaacacacccaaggtgaacatatttcttacggcgttgaaatgtcatcggtgatcaaaagtattcgatacgtcaatattgcagaataagtatatggacgacaacgaaaagggaaaaaatacacgggagttcctttcagttagtaggacaggatttcttcgatgttgacctcagatatattgccttaacgtgaggtaacttcaatgacttagcttcaagttgatattttgtaggaactctgttccatgtagggaccaaacttttaaggactggacagcaaatatctggagaagtagaaagtaaaatgtaaggaccctttgaatcaaaggatttatataggaatttcataggattcaaatcctataggaaatttttctatttggccctttgattcaaaggattgaagctttccagatcctatgaaattcctatggaatcacacattgcatgtggattttggaggaaatttagcaagagctccaacctcttggaaaatttcctttgagtctatctctctcatccgattcctgcgttttttcctgcgctccaatcaaacgaccattcctatatttttcctgtgttttgcaatcctctgtgttttttctattcctctgttttttctaccctacgattcaaaggggccctaattgtacatatcctctttagattgcaattaatgatttaccctccggacccacatgtcagtaaccccccccccccatatatatgtcatttgcataggagggtaaatcctcagattattgatataaacgaagggtatatgatctaaacggagggaataatatgaatttggcgtactgaactaatttggcatatactgaatcactagctatattgttcaaagtaatatgagttgaaccaatgatcttagccaagaaaccaactgaatttcatggacacttttctaacatgaaatttaagtaaatatgggccaaacatgatattttatatatgtgaggaggttctgtaaaatattacaatcatatatagtacctacgattatgtacggtcacaagttataatttataattaattaatacctactttaggcttttatatatgtgtgtgtataaataaatgtacagattccaaaatgttttgttttcgtcggtccggccagtggaatgccagattgtattaagagtgagggaaaaaaatgtagaggatgtacgaagtttaaacaacaaatacggttgttgtgattgacttacataagaacaaggggtaaagcctgcactactgcacccaatctagctacacaaagaaaggagccctgctgcagtatcctcccaggccagttgcaccattcccattcctcccagatcgcttgagccacttgcgacgcaaacctgcagacgtgctgctggaatgcctgagcatttcactctttccacaccagccacgaaatcagaataagaacagcatcaaagctaggcagcgcaactggactttgttggaagaaggcgacgagaatcaaaccaccagaataataggtcaccagaggaggagcatgcgaaatcttcagcttatggtggacattaccccatacctgcctggtgtaggtagctaattccaaaatggtgtgttctaaatgcatcattatatgaacctaccagccttggcgacgttattgtcattcctatgtgcacaccctttggtagtctagtggtgtaagttacgactgcacatgctactagttttgcgtgcttgaacttccacagccagtccaagtacgtccagagcacgtgatacaagtgtacaagtgtgaggtgagcacgggcactctcgatacttgacacgtttgccccatgacagttctatcacgtgattggactagtgcatatacaatctacctatagtggtgatgtccaaacaataatggaaatgtttacctataccctataattaatagtgcataaatgtttatattcaatagaaaaactatatatgtattatgcagagacattttgctaaagatgatttacaatcacctctctttcacatctctgctccatgcgcggatggcttgagcttcagttaagcaaccacaagagcttatattggctactatgagttaaattcatacggaggctgtttggagcaactcttctattatgtataaaaatagttaaattcattataaacaaactgtttacatgtttttacacaaatattgtaaaaacttacaatcacatacaattctcacctagcaaaaagatccttctgtatacaaggaaagcagtttttacaaaaggagtaagaaaagaacagtgcattcatatctgatgaccataattcatgtcatcttccgtttgaaatggcagatgcagtgccattgcttaccatcgatgaacttgtcatgatgtactcgtcaaacccttcattttgcattattgtcatcatatgatagctcaaatctgttggtgacatctctggtaatggaatgctaccatcaaggtaatgaatgacctgccgcatagaaggccttgcattagcaaaagggtgagagcataaaagtccaagatttatagctaaaactgcctctctaacattataatttccttcaagcctgctatccactgtactgactagtgatcctttgttccattgctcaagcacccagtcaactaacatcgtttggctatcaagtgaactttgattgatgggtctctgcccacaggcaacctcgagaacaaacatgccaaaagcaaatacatcagtaagaggggtcgccttgctagtgtgtcctagttctggagctaggtatcctattgttccaaccacatgcgtggtttgtgggtcatcatcatgatcatacaatcttgcaaggccaaagtcaccaagtcgtccgttcatatcgccatcaagaagaacattactagcttttatgtcccgatggataacagctttttcccactcttcgtggagatagaccaagcaagatgcaatgcctttgatgatatgccacctttgggcccaagttagaatggtttttccctctatactatgtatgtatttgtcaacacttccatttggcatgtagtcatacactaagaacagctcacctcttcttctacaatagccaagtaattgcacgagattatggtgttggagacgaccaatactaacaatctcggcaacaaattccttcattccttgccttgattcatgacacaccctctttactgcaatctccaattttgacactggaagggtacccttatatactctcccaaatcctcctacacccagcagattctcatttttgaatccttcagttgcatgatacagatccttataagagaaccggtgcggtccaaactcaacctcccaatcttcgcgcagttctgcatacctcatatgccttcgtatgagtacaagaccaataatgcccacagtaaggacaaaacttgccgttgctactggtagaacaatctccaataccttcgatcgtggctttgggcccatgcgtggcagctttggtagcttacctaagttaatggctgaagcaggactatttatcgcaaagctccagccgagtacacaatgctgcacgttgattgtgccagttgcagaggagaaaccaacatacgcaacatctgtaatcacagatgtgaggttgtagctggctgtgaacaatggcttcatgggtctcgcaaccttgatgggagccatggccacagtgatctgcgtgttgttgctatcgtagtccacccacacctgcatggcctcacggctaatcaggctcaagttatggaagttaccatccttgtcatcgtagtagccggcgtagtaggactgctctgatcggagaccgttcatgttgacgccggcatggtttgcattgatgtcgccaaactccttgttttggatggtgtcgagctcgacagcgaagaaatggttgctgctattgccgttgctctggatgttggcgaggcccaggaattggccaggcaacgcagctgagaagttcatgcttggcacaatgacgaaggccatgccatgagcacttagatcagtgtagacagataggatggcgaatatgaaggatgccgagaaggagagcactgatccattgggtgatcggacaaagcgcaacgggaccgggtagaatgcatggcccttctgctggactgtgccattggtgagctctaggaggccacctgatgtgatagttgcaccatccatggtcaggttagcaccagagaagccagagtaggcgaattggttgtcatcgttggcagagaaggctggtaggataaggctaataaggtataggagctgcaggagcactaacgtactggaggacat
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| CDS seq | atgtcctccagtacgttagtgctcctgcagctcctataccttattagccttatcctaccagccttctctgccaacgatgacaaccaattcgcctactctggcttctctggtgctaacctgaccatggatggtgcaactatcacatcaggtggcctcctagagctcaccaatggcacagtccagcagaagggccatgcattctacccggtcccgttgcgctttgtccgatcacccaatggatcagtgctctccttctcggcatccttcatattcgccatcctatctgtctacactgatctaagtgctcatggcatggccttcgtcattgtgccaagcatgaacttctcagctgcgttgcctggccaattcctgggcctcgccaacatccagagcaacggcaatagcagcaaccatttcttcgctgtcgagctcgacaccatccaaaacaaggagtttggcgacatcaatgcaaaccatgccggcgtcaacatgaacggtctccgatcagagcagtcctactacgccggctactacgatgacaaggatggtaacttccataacttgagcctgattagccgtgaggccatgcaggtgtgggtggactacgatagcaacaacacgcagatcactgtggccatggctcccatcaaggttgcgagacccatgaagccattgttcacagccagctacaacctcacatctgtgattacagatgttgcgtatgttggtttctcctctgcaactggcacaatcaacgtgcagcattgtgtactcggctggagctttgcgataaatagtcctgcttcagccattaacttaggtaagctaccaaagctgccacgcatgggcccaaagccacgatcgaaggtattggagattgttctaccagtagcaacggcaagttttgtccttactgtgggcattattggtcttgtactcatacgaaggcatatgaggtatgcagaactgcgcgaagattgggaggttgagtttggaccgcaccggttctcttataaggatctgtatcatgcaactgaaggattcaaaaatgagaatctgctgggtgtaggaggatttgggagagtatataagggtacccttccagtgtcaaaattggagattgcagtaaagagggtgtgtcatgaatcaaggcaaggaatgaaggaatttgttgccgagattgttagtattggtcgtctccaacaccataatctcgtgcaattacttggctattgtagaagaagaggtgagctgttcttagtgtatgactacatgccaaatggaagtgttgacaaatacatacatagtatagagggaaaaaccattctaacttgggcccaaaggtggcatatcatcaaaggcattgcatcttgcttggtctatctccacgaagagtgggaaaaagctgttatccatcgggacataaaagctagtaatgttcttcttgatggcgatatgaacggacgacttggtgactttggccttgcaagattgtatgatcatgatgatgacccacaaaccacgcatgtggttggaacaataggatacctagctccagaactaggacacactagcaaggcgacccctcttactgatgtatttgcttttggcatgtttgttctcgaggttgcctgtgggcagagacccatcaatcaaagttcacttgatagccaaacgatgttagttgactgggtgcttgagcaatggaacaaaggatcactagtcagtacagtggatagcaggcttgaaggaaattataatgttagagaggcagttttagctataaatcttggacttttatgctctcacccttttgctaatgcaaggccttctatgcggcaggtcattcattaccttgatggtagcattccattaccagagatgtcaccaacagatttgagctatcatatgatgacaataatgcaaaatgaagggtttgacgagtacatcatgacaagttcatcgatgagtgaaatgctcaggcattccagcagcacgtctgcaggtttgcgtcgcaagtggctcaagcgatctgggaggaatgggaatgacatgtcttggacaaagcccatgtcctccctcctatgcaccatcctctcccttgttcttatccttgaagctttcacaactagccatggcgagttcgtctaccatggcttttctggtgttaacctcacccttgatggaaatgccatggtcacaccagacggcatccttgagctcaccaatgacacaattaatctaggacacgcattttatccaactccacaaaacttccgcaaattttccaacagcacagtgcaatcattctcactcagctttgtgtttgcaatcctctcagtgcatgatgatataagtgcagatggcatggccttctttgttgctccaagcaagaacctttccaatacatgggcacagtatataggtctcctcaatagtaggaacgatggcaacagaagcaatcacatgttcgcggtcgagcttgatactacccaaaatgatgagttcaaagacatcgacaacaaccacgttggaatcaacatcaacagcctcatctctttgcaagctcaccacactggatactacgatgacaagagtggtttcttcaacaacttgactctgatcagtggcaaggccatgcaggtatgggctgactatgatggagagtctgcacaaatcaacgttaccttggctcatcttggagcacccaaatctgtaagaccactgctttcatcttcctataacctctcagatgttcttagagatcaatcatacatcggtttctcagccacaacaggtgcgattagcacaagacattgcgtacttggctggagttttgctatgaatagtcctgctccagctatagacatctccagactcccaaagctaccacgccttggcccaaagcctcgttccaagaccttagatatcaccctgcctatagccacagcaatatttgtccttgctgctggtaccgttgttgttttacttgttcgtagaagattgagatatatggagctacgggaagattgggaggttgattttgggccacatcgattctccttcaaagacatgtaccatgctacggaagggtttaataaaaataacttactaggagtaggtgggtttggcaaagtttataaaggcgttcttcagaagtctaaagttccagtagctattaagagggtgtcccacgagtctacacaagggatgaaagagttcattgctgaggttgtcagtattggtaagctcagacaccgcaacctagtgcctctacttggttattgtcggcgaaaaggtcaactccttctagtatatgactatatgtcaaatggcagccttaataagtatttgtatcctgaagatggaaaaccattattgaattgggccgagaggtttcatgtcatcaagggtgtcgcatttggcttgctctatctccatgagaagtgggaaaaggttgtcatacaccgagatattaaaccaagtaatgttcttctagatagtgaaatgaatggaaaattaggtgactttggtctttcaaggttatatgaccatgggactgatccacaaaccactcacatggttggaaccatggggtacttagctccagaattggtacgcacagggagagcatccacttctacagatgtctttgcatttggcatatttcttcttgaggtcacctgtgggcaaagacctattaagaaagactcacagggaaaccagcatagtttgttcgattgggttcttcagtttctgcataatagctcactaatcgaggccatggacagtagactccaagctgattttaatatcgatgaggtttgtcttgtcctaaagctaggtcttctatgctcacacccatttactaatgcaagacctagcatgcagcaagtcatggagtaccttgaaggtgatacaccaataccagagatttcatcaaggcattttagctttactatgcaggctttgatgcagagcaaaggatttgaatcaccagacatgttatgcccacagtttacgagtattggcacattctctgaactgtcagggggaagatga
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| Protein seq | MSSSTLVLLQLLYLISLILPAFSANDDNQFAYSGFSGANLTMDGATITSGGLLELTNGTVQQKGHAFYPVPLRFVRSPNGSVLSFSASFIFAILSVYTDLSAHGMAFVIVPSMNFSAALPGQFLGLANIQSNGNSSNHFFAVELDTIQNKEFGDINANHAGVNMNGLRSEQSYYAGYYDDKDGNFHNLSLISREAMQVWVDYDSNNTQITVAMAPIKVARPMKPLFTASYNLTSVITDVAYVGFSSATGTINVQHCVLGWSFAINSPASAINLGKLPKLPRMGPKPRSKVLEIVLPVATASFVLTVGIIGLVLIRRHMRYAELREDWEVEFGPHRFSYKDLYHATEGFKNENLLGVGGFGRVYKGTLPVSKLEIAVKRVCHESRQGMKEFVAEIVSIGRLQHHNLVQLLGYCRRRGELFLVYDYMPNGSVDKYIHSIEGKTILTWAQRWHIIKGIASCLVYLHEEWEKAVIHRDIKASNVLLDGDMNGRLGDFGLARLYDHDDDPQTTHVVGTIGYLAPELGHTSKATPLTDVFAFGMFVLEVACGQRPINQSSLDSQTMLVDWVLEQWNKGSLVSTVDSRLEGNYNVREAVLAINLGLLCSHPFANARPSMRQVIHYLDGSIPLPEMSPTDLSYHMMTIMQNEGFDEYIMTSSSMSEMLRHSSSTSAGLRRKWLKRSGRNGNDMSWTKPMSSLLCTILSLVLILEAFTTSHGEFVYHGFSGVNLTLDGNAMVTPDGILELTNDTINLGHAFYPTPQNFRKFSNSTVQSFSLSFVFAILSVHDDISADGMAFFVAPSKNLSNTWAQYIGLLNSRNDGNRSNHMFAVELDTTQNDEFKDIDNNHVGININSLISLQAHHTGYYDDKSGFFNNLTLISGKAMQVWADYDGESAQINVTLAHLGAPKSVRPLLSSSYNLSDVLRDQSYIGFSATTGAISTRHCVLGWSFAMNSPAPAIDISRLPKLPRLGPKPRSKTLDITLPIATAIFVLAAGTVVVLLVRRRLRYMELREDWEVDFGPHRFSFKDMYHATEGFNKNNLLGVGGFGKVYKGVLQKSKVPVAIKRVSHESTQGMKEFIAEVVSIGKLRHRNLVPLLGYCRRKGQLLLVYDYMSNGSLNKYLYPEDGKPLLNWAERFHVIKGVAFGLLYLHEKWEKVVIHRDIKPSNVLLDSEMNGKLGDFGLSRLYDHGTDPQTTHMVGTMGYLAPELVRTGRASTSTDVFAFGIFLLEVTCGQRPIKKDSQGNQHSLFDWVLQFLHNSSLIEAMDSRLQADFNIDEVCLVLKLGLLCSHPFTNARPSMQQVMEYLEGDTPIPEISSRHFSFTMQALMQSKGFESPDMLCPQFTSIGTFSELSGGR |
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| Function | L-type lectin-domain containing receptor kinase SIT2 [UniProtKB/Swiss-Prot:Q7XUN6] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLima_07g0010340 | OsLima_07g0010340.01 | Chr07 | 11395600 | 11403384 | - | NAM | ||
| CDS seq | atgtcctccagtacgttagtgctcctgcagctcctataccttattagccttatcctaccagccttctctgccaacgatgacaaccaattcgcctactctggcttctctggtgctaacctgaccatggatggtgcaactatcacatcaggtggcctcctagagctcaccaatggcacagtccagcagaagggccatgcattctacccggtcccgttgcgctttgtccgatcacccaatggatcagtgctctccttctcggcatccttcatattcgccatcctatctgtctacactgatctaagtgctcatggcatggccttcgtcattgtgccaagcatgaacttctcagctgcgttgcctggccaattcctgggcctcgccaacatccagagcaacggcaatagcagcaaccatttcttcgctgtcgagctcgacaccatccaaaacaaggagtttggcgacatcaatgcaaaccatgccggcgtcaacatgaacggtctccgatcagagcagtcctactacgccggctactacgatgacaaggatggtaacttccataacttgagcctgattagccgtgaggccatgcaggtgtgggtggactacgatagcaacaacacgcagatcactgtggccatggctcccatcaaggttgcgagacccatgaagccattgttcacagccagctacaacctcacatctgtgattacagatgttgcgtatgttggtttctcctctgcaactggcacaatcaacgtgcagcattgtgtactcggctggagctttgcgataaatagtcctgcttcagccattaacttaggtaagctaccaaagctgccacgcatgggcccaaagccacgatcgaaggtattggagattgttctaccagtagcaacggcaagttttgtccttactgtgggcattattggtcttgtactcatacgaaggcatatgaggtatgcagaactgcgcgaagattgggaggttgagtttggaccgcaccggttctcttataaggatctgtatcatgcaactgaaggattcaaaaatgagaatctgctgggtgtaggaggatttgggagagtatataagggtacccttccagtgtcaaaattggagattgcagtaaagagggtgtgtcatgaatcaaggcaaggaatgaaggaatttgttgccgagattgttagtattggtcgtctccaacaccataatctcgtgcaattacttggctattgtagaagaagaggtgagctgttcttagtgtatgactacatgccaaatggaagtgttgacaaatacatacatagtatagagggaaaaaccattctaacttgggcccaaaggtggcatatcatcaaaggcattgcatcttgcttggtctatctccacgaagagtgggaaaaagctgttatccatcgggacataaaagctagtaatgttcttcttgatggcgatatgaacggacgacttggtgactttggccttgcaagattgtatgatcatgatgatgacccacaaaccacgcatgtggttggaacaataggatacctagctccagaactaggacacactagcaaggcgacccctcttactgatgtatttgcttttggcatgtttgttctcgaggttgcctgtgggcagagacccatcaatcaaagttcacttgatagccaaacgatgttagttgactgggtgcttgagcaatggaacaaaggatcactagtcagtacagtggatagcaggcttgaaggaaattataatgttagagaggcagttttagctataaatcttggacttttatgctctcacccttttgctaatgcaaggccttctatgcggcaggtcattcattaccttgatggtagcattccattaccagagatgtcaccaacagatttgagctatcatatgatgacaataatgcaaaatgaagggtttgacgagtacatcatgacaagttcatcgatgagtgaaatgctcaggcattccagcagcacgtctgcaggtttgcgtcgcaagtggctcaagcgatctgggaggaatgggaatgacatgtcttggacaaagcccatgtcctccctcctatgcaccatcctctcccttgttcttatccttgaagctttcacaactagccatggcgagttcgtctaccatggcttttctggtgttaacctcacccttgatggaaatgccatggtcacaccagacggcatccttgagctcaccaatgacacaattaatctaggacacgcattttatccaactccacaaaacttccgcaaattttccaacagcacagtgcaatcattctcactcagctttgtgtttgcaatcctctcagtgcatgatgatataagtgcagatggcatggccttctttgttgctccaagcaagaacctttccaatacatgggcacagtatataggtctcctcaatagtaggaacgatggcaacagaagcaatcacatgttcgcggtcgagcttgatactacccaaaatgatgagttcaaagacatcgacaacaaccacgttggaatcaacatcaacagcctcatctctttgcaagctcaccacactggatactacgatgacaagagtggtttcttcaacaacttgactctgatcagtggcaaggccatgcaggtatgggctgactatgatggagagtctgcacaaatcaacgttaccttggctcatcttggagcacccaaatctgtaagaccactgctttcatcttcctataacctctcagatgttcttagagatcaatcatacatcggtttctcagccacaacaggtgcgattagcacaagacattgcgtacttggctggagttttgctatgaatagtcctgctccagctatagacatctccagactcccaaagctaccacgccttggcccaaagcctcgttccaagaccttagatatcaccctgcctatagccacagcaatatttgtccttgctgctggtaccgttgttgttttacttgttcgtagaagattgagatatatggagctacgggaagattgggaggttgattttgggccacatcgattctccttcaaagacatgtaccatgctacggaagggtttaataaaaataacttactaggagtaggtgggtttggcaaagtttataaaggcgttcttcagaagtctaaagttccagtagctattaagagggtgtcccacgagtctacacaagggatgaaagagttcattgctgaggttgtcagtattggtaagctcagacaccgcaacctagtgcctctacttggttattgtcggcgaaaaggtcaactccttctagtatatgactatatgtcaaatggcagccttaataagtatttgtatcctgaagatggaaaaccattattgaattgggccgagaggtttcatgtcatcaagggtgtcgcatttggcttgctctatctccatgagaagtgggaaaaggttgtcatacaccgagatattaaaccaagtaatgttcttctagatagtgaaatgaatggaaaattaggtgactttggtctttcaaggttatatgaccatgggactgatccacaaaccactcacatggttggaaccatggggtacttagctccagaattggtacgcacagggagagcatccacttctacagatgtctttgcatttggcatatttcttcttgaggtcacctgtgggcaaagacctattaagaaagactcacagggaaaccagcatagtttgttcgattgggttcttcagtttctgcataatagctcactaatcgaggccatggacagtagactccaagctgattttaatatcgatgaggtttgtcttgtcctaaagctaggtcttctatgctcacacccatttactaatgcaagacctagcatgcagcaagtcatggagtaccttgaaggtgatacaccaataccagagatttcatcaaggcattttagctttactatgcaggctttgatgcagagcaaaggatttgaatcaccagacatgttatgcccacagtttacgagtattggcacattctctgaactgtcagggggaagatga
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| Protein seq | MSSSTLVLLQLLYLISLILPAFSANDDNQFAYSGFSGANLTMDGATITSGGLLELTNGTVQQKGHAFYPVPLRFVRSPNGSVLSFSASFIFAILSVYTDLSAHGMAFVIVPSMNFSAALPGQFLGLANIQSNGNSSNHFFAVELDTIQNKEFGDINANHAGVNMNGLRSEQSYYAGYYDDKDGNFHNLSLISREAMQVWVDYDSNNTQITVAMAPIKVARPMKPLFTASYNLTSVITDVAYVGFSSATGTINVQHCVLGWSFAINSPASAINLGKLPKLPRMGPKPRSKVLEIVLPVATASFVLTVGIIGLVLIRRHMRYAELREDWEVEFGPHRFSYKDLYHATEGFKNENLLGVGGFGRVYKGTLPVSKLEIAVKRVCHESRQGMKEFVAEIVSIGRLQHHNLVQLLGYCRRRGELFLVYDYMPNGSVDKYIHSIEGKTILTWAQRWHIIKGIASCLVYLHEEWEKAVIHRDIKASNVLLDGDMNGRLGDFGLARLYDHDDDPQTTHVVGTIGYLAPELGHTSKATPLTDVFAFGMFVLEVACGQRPINQSSLDSQTMLVDWVLEQWNKGSLVSTVDSRLEGNYNVREAVLAINLGLLCSHPFANARPSMRQVIHYLDGSIPLPEMSPTDLSYHMMTIMQNEGFDEYIMTSSSMSEMLRHSSSTSAGLRRKWLKRSGRNGNDMSWTKPMSSLLCTILSLVLILEAFTTSHGEFVYHGFSGVNLTLDGNAMVTPDGILELTNDTINLGHAFYPTPQNFRKFSNSTVQSFSLSFVFAILSVHDDISADGMAFFVAPSKNLSNTWAQYIGLLNSRNDGNRSNHMFAVELDTTQNDEFKDIDNNHVGININSLISLQAHHTGYYDDKSGFFNNLTLISGKAMQVWADYDGESAQINVTLAHLGAPKSVRPLLSSSYNLSDVLRDQSYIGFSATTGAISTRHCVLGWSFAMNSPAPAIDISRLPKLPRLGPKPRSKTLDITLPIATAIFVLAAGTVVVLLVRRRLRYMELREDWEVDFGPHRFSFKDMYHATEGFNKNNLLGVGGFGKVYKGVLQKSKVPVAIKRVSHESTQGMKEFIAEVVSIGKLRHRNLVPLLGYCRRKGQLLLVYDYMSNGSLNKYLYPEDGKPLLNWAERFHVIKGVAFGLLYLHEKWEKVVIHRDIKPSNVLLDSEMNGKLGDFGLSRLYDHGTDPQTTHMVGTMGYLAPELVRTGRASTSTDVFAFGIFLLEVTCGQRPIKKDSQGNQHSLFDWVLQFLHNSSLIEAMDSRLQADFNIDEVCLVLKLGLLCSHPFTNARPSMQQVMEYLEGDTPIPEISSRHFSFTMQALMQSKGFESPDMLCPQFTSIGTFSELSGGR
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLima_07g0010340 | OsLima_07g0010340.02 | Chr07 | 11395366 | 11397658 | - | IsoSeq | ||
| CDS seq | ccatggcttctatgtcttaaactttgtctactcaatgagcttcagacatgtcttggacaaagcccatgtcctccctcctatgcaccatcctctcccttgttcttatccttgaagctttcacaactagccatggcgagttcgtctaccatggcttttctggtgttaacctcacccttgatggaaatgccatggtcacaccagacggcatccttgagctcaccaatgacacaatta
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| Protein seq | PWLLCLKLCLLNELQTCLGQSPCPPSYAPSSPLFLSLKLSQLAMASSSTMAFLVLTSPLMEMPWSHQTASLSSPMTQL |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 1.193230 | 0.0 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_07g0283050 | SBH | 0.952421 | 1.024886 | 2.252278 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os07g18240 | RBH | 1.869839 | 2.287621 | 0.251811 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os07g0283125 | SBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_07g0001860 | SBH | 0.794274 | 0.468260 | 0.961358 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_07g0001860 | SBH | 0.230921 | 0.095846 | 1.286250 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_07g0001760 | SBH | 0.433948 | 0.0 | 0.622571 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_07g0001790 | SBH | 0.008926 | 0.007383 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_07g0010410 | RBH | 6.252750 | 0.0 | 6.557066 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_07G0190600 | RBH | 2.032993 | 0.34252 | 0.021405 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_07g0010870 | RBH | 0.889044 | 0.0 | 0.436675 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_07G0191100 | RBH | 1.8752525 | 0.110067 | 0.0153285 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_07g0001790 | SBH | 0.096715 | 0.031098 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_07g0001860 | SBH | 0.094928 | 0.222106 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_07g0001830 | SBH | 0.200830 | 0.857629 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_07g0001940 | SBH | 0.689459 | 0.049129 | 0.446399 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_07g0001890 | SBH | 0.073340 | 0.000000 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_07G001910 | SBH | 0.189408 | 0.000000 | 0.156733 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_07g0010180 | RBH | 0.394378 | 0.0 | 0.261330 |
