Basic Info

Gene ID OGI # | Score   Accession | Assembly | Annotation Location Links
OsLima_05g0023890 OGI:05070420 | 16/16 LIMA | Os127564RS1 | Gramene(+IsoSeq) Chr05:27225699-27232268
Gene Symbol -
DNA seq

atggcggcacggtcgtcgttgtttcttctctgcctcgccaccgccaccgccggcgtactccaagctcgtgcccagcctgacagcaaaggtacgtagtacaatcctagtatcctacctcatagtaatgcgcgcaatgcttcacaaatcaaaaagacatcaatgttcaatgaactaaaagagcatatgtttttcatgcttttgcaggtttcatcagcgtagactgcgggctcccggggaagacgagctacattgacgacaagaccaagatatcctacgcctcggacgacggattcaccgacggcggcaagcactacaacgtctcgccggagtacatcaagccggcggtcacggcgcgctactacaacgtgcgcagcttccccgacggcgcgcgcaactgctacacgctccggtcgctcgtggccggcctcaagtacctcatccgcgccaccttcatgtacggcaactacgacggcctcaacaagctgcccgtgtcgtttgacctccacatcggcgtcaacttctggacggtggtgaacatcacggacccgatccagccggtgaaccgggaggccatcgtcgtcgtgcccgacgactccgtgcaagtctgcctggtgaacaccggcgccgggacaccgttcatctccgggttggacctcaggcctcttatgaacaagctctacccgcaggtgaacgccactcagggcctactccaactcgccaggctcaacttcggcccatctgacgaaaccTccatcaggtgagctaagttaaagtttcctacgcgtatagactgtttatatttattatcatatcatttatttatactatcatcagtattaccggtgataattcaaactcgataaattttaactaaaagttagtctcacaatatagggtaattttactattcttaaaaagttatcgaaaggtatcatattttttagtgtaaaatttggtacctccaagtactaaatattttgaggtatcaaaattattggtgtaaaatcttggtatctttaggcactttatcaaatatcataaaattttccacaatatataggtttagtgatataaatagcgtaatattagattcgtaTttacagatattttcatatacTttttctgattaccaacatgcaaaacgaggggatatctcttaaaggatgaaatcacttttcccgataagagctagatatttagctaagagcaggtacaatagcaggctataagccagctgcaaacatattttaaggaaataaatgaggagagagaagggaagcgggctacagatttatagtcagctatagcatggactccaatacacagtgtatatgacaggtgggtccaggtactaatagtgtagtatgtaactattgtatgaataagctattagattggctatagatgaattggagctaatagttggctatactattaaacttgctctaattctctgtagataaattttacggtttttgagaaagtactaatttttaaattagaaaatatgatatcttctaataTtttttttaaggatggtaaaattatctgtaggaaatgcaactgatcgattcaatggccaggtatccggatgatccgcacgacagagtatggTttccttggtttgatgcggccaagtggaacgagatatcaacgacaaacagggttcagaacatagacaacgacctgttcgaggcgccgacggcggtgatgcagacagcggtcacgccaatcaacgcctccaacaacatcgacttcttctggaactcacagccgcagcccaacgacccagcgccagggtacatcgccatctttcacttctccgagcttgagaaccttcccaacaacgcctcacggcaattctatatcaacatcaacggcatattgttcgacgatggtttcacaccatcgTttctctacgccgaggcctcctacagctccaaaccctttgtgcgacacccgcagtacaacatcaccattaacgccaccgccaactcgacgatgccgccgctcatcaacgccgtcgaggtgtactctgtcatctccaccgctaacattggcaccgactcacaagatggtatgtgctcagggttttcaatttcgatttcatctaaaatttcagccatttcagtagaattaaaatttttaaaattttgaaaatttcagaaatttttggaccgaaattttctgaaattttgacacaatttaacagaatttgactaaattcataaaaaatttgagaaaaactgaaatatgcacatacatgagctagctgatggtcaagcatgtcatgtgcattgatgaaattttttggtgattgacagtatcagcaatcatgacgatcaaggcgaagtaccaggtgAaaaaAGAATTGGATGGGTGACCCGTGCCTCCCTAGAAATCTTGCGTGGGATAATTTGACCTGCAGCTATGCCATTTCTAACCCTGCAAGAATCACGAGCTTGTAAGTAATAATTCATTCCATTAGCCAAAAACAACATGACTATTGTGATGAAAAAACAAAACTATTACCTCCATCCCAAATAAAAAGGGTGCAAACGTGTATGGCTATTGTTAAACTATTGTAAATATGAAAATTTTAATTGTATACACAATGCATAGTTAATGGCTTAGATTAAAATAATTAAAGAGAACCCATCAATTATAACATGCTAATTATTAATTTAAAGTTCAAAATTAAATTAATAAAAGAGATGATATACTTGTTGCTTGTGAATTTAGAAATTACTAAGTTTTAGGATACTAATGAAACTAAAGAGGCCATGCATGGCAGTAAAAATTAATTAAGACCCCATGTTATTTCCAATAGAATTtttttatttgatatgaaattttaatacaatctatggtggtcgataccaccatcaatcaccagcctgatcttttttattattattattagcaccctcagaatgccaaatcagcacatgcataaatagcaagaggaaattaaatctaatgggagctaattaactgtgcaatgaaattgggctgatcatattctctttgcagaaacctgtcaaaaattggtttgagtggtgagatatcgtcctcttttgggaatctcaaggccatccaatatttgtatgttatgagttcatgatgtcggatgtattaacttgtttgcgtaatctgagttaaaatttggaaaatcttgctccatatcttgcagggatctatcaaacaacaacttgacaggctcgattccaaatgccctttcacagttgtcttcattgacaatcttgtaagtttggcaattcttttatcaacttttacctagagtaaagtacacggtcggtccttaaagttggagcgaggtgtcacttaggtccatgatcttgaaaaatcgacattaggatccacggtcttgTttaagtgactcattgaggtccaaaggatctctgaccgggttgactagcttatgtggccatccagagtggcaacatattttcatgtgagctcctccacatccgatccaacccttcttccccaaatcttctttcagcactggtggtgaggacgacgacgggtggctgatggtggacaacaacgatggcgcagctggtggtagacaacgacagcgatggcggacggttgaaggcgcggcgcgcgcggttgagggccgaaggagaggggagcagcggtaagggcagagggcgtcaagctccggcagctgagctctatacaagcttgaggccacggtggtggaggttggaccggcgaCgactcggggtatggtggcggcagcggctgagctcagggacgacacgagcgagctcgccggaggtcaccctcgtgctgctacttcgtgtcgtccacgcacatctagccgggagacaacgaggggatgacgagtggtggcgattgacgcggagcaggaagcagcaacacatcaagggccaggagacaacgaggggacgtcgagagacggcggcttgcagccgtagggatctggccgcagctgggacgggatccaccggtgtgcacgccgccgcctagcgcagtgatgtccacggccttagtgcggccgtcgtcgctagatccgatggataactcgatgacatcaccgtcattgaggctctgatagttgtcgaacttgagggaggaccggtggacgaagaggtcctcgccgccattgtcgggagtgatgaagccgaacccattggtggcgtcgaaccccttcatcgtcccctcaccctctccgacaccacctcgccctcgccgccccaagtcgaaccctctaaaaccctaaaagctgcccgccgtctcgctccactggccagccgccgccaccgccctactcgcccttctccctctttgcgcatgctcgccaactcgtcgccgtacctgtctccctcctcgtcgtcactgccgccgccagcccctgcaaccgcaaaccatagaaatcacactgaaagaagatatGgggaagaagggttggatcggatgcgggggaGgggggcgaaatgcaaatatactactactctggacggtcacgtaagccagtcaacctggtcagaggtcctttggacctcaatgagtcacttaaacaagatcgcggaccctaataTCgatttttcaagatcatggacctaagtaacacctcgcttcaactttaaggaccgatcatgtactttactcttttacctacgtactctttagaatccttttgaactaatatcctactgtatgtcttcttttagagatttgacaggAaaccaactaaatggaacaattccgcctggacttctcaagagaattcaggatggctttttaaatctaaggtaatgacaccacatTCttcttatagcagtcttcttcagcaaaaggtgcagatcaaTTtttcagaaaatggacaTaaacatatttatgtcattaatatatagatatggaaataacccaaatatttgcaccaatggcaactcatgtcaaccaccAaaaaacaagagcaagctagctatctacattgttgttcctatagttctggtcctcgcgatagtatcagtgatgacactactctattgcctactgagaagaaaaaaacaaggtgggtcttgctatcatttgtctgctctacttcatcttcttgaatactactgatgctagttccattcttcacgtacaaaggatcaatgaacaattctgtaaagccacaaaacgagacaatgagatatgggccaacaaataatggctccaggcataattcatcactgcggcttgagaaccgccggtttacatataatgaactggagaagataacgaacaaattccagcgagttcttggacaaggaggctttggaaaagtctatgatggcttcttggaggatggcactgaagtggcagtcaaagtgaggactgaatcttccaaccaaggtgataaggagtttcttgttgaggtagaattttttaagctgcactttttcttgctatgtaaaaatttctatcaagaaaagtctccatgggggcatcattaaatagacaagtttcaccactttaggctcaaattttaacccggattcatcacaagaaccttgtctctatgatcggctattgtaaggatgagaaatatatggcacttgtgtatgagtacatgtcagaaggaacccttcaagaacacattgcaggtccgaactaacttcatctaccagcttatttttttagtcctttcatgatctccaaTTCttatatttgcaggaaaaggaaatgatgggagatacttaacctggaaagagaggcttcgaattgcgctggaatctgctcaaggtaactacttagaatttctaatgctatttttagtttgattttacatttttttctctctctagaagcttgatcagtatttcaattacatggtgaattaatgatcagggctAGagtacctacacaaagggtgcaaccctcctcttattcaccgtgatgtgaagggaaccaacattttgttgaacacgaggctagaggccaagattgctgattttggtttgtccaaggttttcaatcctgagaacggcacccatgtatctacgaacaaacttgttggcacacctggatatgtggatccagagtatgttgtctttcttgaagccccttttttaaagttcttttgttagagaaatactaattgtaagacttattgggactgaccaaatgcgtaggtaccaatcaacaatgcaaccaacgactaagagtgatgtctatagctttggtgttgtcctgttggagttggtaacagggaagccagctatcttgcgtgatccagagcccatcagcatcatccattgggcacaacaacgcttagcacggggtaacattgagggtgtggtggatgcaagcatgcatggtgactacgatgtgaatggcctatggaaggttgcagacattgcacgcaagtgtacggcgctttcgtcagcacaccgccccactatgaccgacgtggtggcacagttgcaagagtgtctcgAGCTagaggataagcaccaggtcagtgatataaacaatggcttttataatggcaatagtggcgatctaaactctaacttctacaccacttaa

More
CDS seq

atggcggcacggtcgtcgttgtttcttctctgcctcgccaccgccaccgccggcgtactccaagctcgtgcccagcctgacagcaaaggtttcatcagcgtagactgcgggctcccggggaagacgagctacattgacgacaagaccaagatatcctacgcctcggacgacggattcaccgacggcggcaagcactacaacgtctcgccggagtacatcaagccggcggtcacggcgcgctactacaacgtgcgcagcttccccgacggcgcgcgcaactgctacacgctccggtcgctcgtggccggcctcaagtacctcatccgcgccaccttcatgtacggcaactacgacggcctcaacaagctgcccgtgtcgtttgacctccacatcggcgtcaacttctggacggtggtgaacatcacggacccgatccagccggtgaaccgggaggccatcgtcgtcgtgcccgacgactccgtgcaagtctgcctggtgaacaccggcgccgggacaccgttcatctccgggttggacctcaggcctcttatgaacaagctctacccgcaggtgaacgccactcagggcctactccaactcgccaggctcaacttcggcccatctgacgaaaccTccatcagggttcagaacatagacaacgacctgttcgaggcgccgacggcggtgatgcagacagcggtcacgccaatcaacgcctccaacaacatcgacttcttctggaactcacagccgcagcccaacgacccagcgccagggtacatcgccatctttcacttctccgagcttgagaaccttcccaacaacgcctcacggcaattctatatcaacatcaacggcatattgttcgacgatggtttcacaccatcgTttctctacgccgaggcctcctacagctccaaaccctttgtgcgacacccgcagtacaacatcaccattaacgccaccgccaactcgacgatgccgccgctcatcaacgccgtcgagAATTGGATGGGTGACCCGTGCCTCCCTAGAAATCTTGCGTGGGATAATTTGACCTGCAGCTATGCCATTTCTAACCCTGCAAGAATCACGAGCTTatatggaaataacccaaatatttgcaccaatggcaactcatgtcaaccaccAaaaaacaagagcaagctagctatctacattgttgttcctatagttctggtcctcgcgatagtatcagtgatgacactactctattgcctactgagaagaaaaaaacaagttccattcttcacgtacaaaggatcaatgaacaattctgtaaagccacaaaacgagacaatgagatatgggccaacaaataatggctccaggcataattcatcactgcggcttgagaaccgccggtttacatataatgaactggagaagataacgaacaaattccagcgagttcttggacaaggaggctttggaaaagtctatgatggcttcttggaggatggcactgaagtggcagtcaaagtgaggactgaatcttccaaccaaggtgataaggagtttcttgttgaggctcaaattttaacccggattcatcacaagaaccttgtctctatgatcggctattgtaaggatgagaaatatatggcacttgtgtatgagtacatgtcagaaggaacccttcaagaacacattgcaggaaaaggaaatgatgggagatacttaacctggaaagagaggcttcgaattgcgctggaatctgctcaagggctAGagtacctacacaaagggtgcaaccctcctcttattcaccgtgatgtgaagggaaccaacattttgttgaacacgaggctagaggccaagattgctgattttggtttgtccaaggttttcaatcctgagaacggcacccatgtatctacgaacaaacttgttggcacacctggatatgtggatccagagtaccaatcaacaatgcaaccaacgactaagagtgatgtctatagctttggtgttgtcctgttggagttggtaacagggaagccagctatcttgcgtgatccagagcccatcagcatcatccattgggcacaacaacgcttagcacggggtaacattgagggtgtggtggatgcaagcatgcatggtgactacgatgtgaatggcctatggaaggttgcagacattgcacgcaagtgtacggcgctttcgtcagcacaccgccccactatgaccgacgtggtggcacagttgcaagagtgtctcgAGCTagaggataagcaccaggtcagtgatataaacaatggcttttataatggcaatagtggcgatctaaactctaacttctacaccacttaa

More
Protein seq

MAARSSLFLLCLATATAGVLQARAQPDSKGFISVDCGLPGKTSYIDDKTKISYASDDGFTDGGKHYNVSPEYIKPAVTARYYNVRSFPDGARNCYTLRSLVAGLKYLIRATFMYGNYDGLNKLPVSFDLHIGVNFWTVVNITDPIQPVNREAIVVVPDDSVQVCLVNTGAGTPFISGLDLRPLMNKLYPQVNATQGLLQLARLNFGPSDETSIRVQNIDNDLFEAPTAVMQTAVTPINASNNIDFFWNSQPQPNDPAPGYIAIFHFSELENLPNNASRQFYININGILFDDGFTPSFLYAEASYSSKPFVRHPQYNITINATANSTMPPLINAVENWMGDPCLPRNLAWDNLTCSYAISNPARITSLYGNNPNICTNGNSCQPPKNKSKLAIYIVVPIVLVLAIVSVMTLLYCLLRRKKQVPFFTYKGSMNNSVKPQNETMRYGPTNNGSRHNSSLRLENRRFTYNELEKITNKFQRVLGQGGFGKVYDGFLEDGTEVAVKVRTESSNQGDKEFLVEAQILTRIHHKNLVSMIGYCKDEKYMALVYEYMSEGTLQEHIAGKGNDGRYLTWKERLRIALESAQGLEYLHKGCNPPLIHRDVKGTNILLNTRLEAKIADFGLSKVFNPENGTHVSTNKLVGTPGYVDPEYQSTMQPTTKSDVYSFGVVLLELVTGKPAILRDPEPISIIHWAQQRLARGNIEGVVDASMHGDYDVNGLWKVADIARKCTALSSAHRPTMTDVVAQLQECLELEDKHQVSDINNGFYNGNSGDLNSNFYTT

Function Probable LRR receptor-like serine/threonine-protein kinase At1g51880 [UniProtKB/Swiss-Prot:Q9FZB1]

Transcripts

Gene Transcript Chromosome Start End Strand Source
OsLima_05g0023890 OsLima_05g0023890.01 Chr05 27225699 27232268 + NAM
CDS seq

atggcggcacggtcgtcgttgtttcttctctgcctcgccaccgccaccgccggcgtactccaagctcgtgcccagcctgacagcaaaggtttcatcagcgtagactgcgggctcccggggaagacgagctacattgacgacaagaccaagatatcctacgcctcggacgacggattcaccgacggcggcaagcactacaacgtctcgccggagtacatcaagccggcggtcacggcgcgctactacaacgtgcgcagcttccccgacggcgcgcgcaactgctacacgctccggtcgctcgtggccggcctcaagtacctcatccgcgccaccttcatgtacggcaactacgacggcctcaacaagctgcccgtgtcgtttgacctccacatcggcgtcaacttctggacggtggtgaacatcacggacccgatccagccggtgaaccgggaggccatcgtcgtcgtgcccgacgactccgtgcaagtctgcctggtgaacaccggcgccgggacaccgttcatctccgggttggacctcaggcctcttatgaacaagctctacccgcaggtgaacgccactcagggcctactccaactcgccaggctcaacttcggcccatctgacgaaaccTccatcagggttcagaacatagacaacgacctgttcgaggcgccgacggcggtgatgcagacagcggtcacgccaatcaacgcctccaacaacatcgacttcttctggaactcacagccgcagcccaacgacccagcgccagggtacatcgccatctttcacttctccgagcttgagaaccttcccaacaacgcctcacggcaattctatatcaacatcaacggcatattgttcgacgatggtttcacaccatcgTttctctacgccgaggcctcctacagctccaaaccctttgtgcgacacccgcagtacaacatcaccattaacgccaccgccaactcgacgatgccgccgctcatcaacgccgtcgagAATTGGATGGGTGACCCGTGCCTCCCTAGAAATCTTGCGTGGGATAATTTGACCTGCAGCTATGCCATTTCTAACCCTGCAAGAATCACGAGCTTatatggaaataacccaaatatttgcaccaatggcaactcatgtcaaccaccAaaaaacaagagcaagctagctatctacattgttgttcctatagttctggtcctcgcgatagtatcagtgatgacactactctattgcctactgagaagaaaaaaacaagttccattcttcacgtacaaaggatcaatgaacaattctgtaaagccacaaaacgagacaatgagatatgggccaacaaataatggctccaggcataattcatcactgcggcttgagaaccgccggtttacatataatgaactggagaagataacgaacaaattccagcgagttcttggacaaggaggctttggaaaagtctatgatggcttcttggaggatggcactgaagtggcagtcaaagtgaggactgaatcttccaaccaaggtgataaggagtttcttgttgaggctcaaattttaacccggattcatcacaagaaccttgtctctatgatcggctattgtaaggatgagaaatatatggcacttgtgtatgagtacatgtcagaaggaacccttcaagaacacattgcaggaaaaggaaatgatgggagatacttaacctggaaagagaggcttcgaattgcgctggaatctgctcaagggctAGagtacctacacaaagggtgcaaccctcctcttattcaccgtgatgtgaagggaaccaacattttgttgaacacgaggctagaggccaagattgctgattttggtttgtccaaggttttcaatcctgagaacggcacccatgtatctacgaacaaacttgttggcacacctggatatgtggatccagagtaccaatcaacaatgcaaccaacgactaagagtgatgtctatagctttggtgttgtcctgttggagttggtaacagggaagccagctatcttgcgtgatccagagcccatcagcatcatccattgggcacaacaacgcttagcacggggtaacattgagggtgtggtggatgcaagcatgcatggtgactacgatgtgaatggcctatggaaggttgcagacattgcacgcaagtgtacggcgctttcgtcagcacaccgccccactatgaccgacgtggtggcacagttgcaagagtgtctcgAGCTagaggataagcaccaggtcagtgatataaacaatggcttttataatggcaatagtggcgatctaaactctaacttctacaccacttaa

More
Protein seq

MAARSSLFLLCLATATAGVLQARAQPDSKGFISVDCGLPGKTSYIDDKTKISYASDDGFTDGGKHYNVSPEYIKPAVTARYYNVRSFPDGARNCYTLRSLVAGLKYLIRATFMYGNYDGLNKLPVSFDLHIGVNFWTVVNITDPIQPVNREAIVVVPDDSVQVCLVNTGAGTPFISGLDLRPLMNKLYPQVNATQGLLQLARLNFGPSDETSIRVQNIDNDLFEAPTAVMQTAVTPINASNNIDFFWNSQPQPNDPAPGYIAIFHFSELENLPNNASRQFYININGILFDDGFTPSFLYAEASYSSKPFVRHPQYNITINATANSTMPPLINAVENWMGDPCLPRNLAWDNLTCSYAISNPARITSLYGNNPNICTNGNSCQPPKNKSKLAIYIVVPIVLVLAIVSVMTLLYCLLRRKKQVPFFTYKGSMNNSVKPQNETMRYGPTNNGSRHNSSLRLENRRFTYNELEKITNKFQRVLGQGGFGKVYDGFLEDGTEVAVKVRTESSNQGDKEFLVEAQILTRIHHKNLVSMIGYCKDEKYMALVYEYMSEGTLQEHIAGKGNDGRYLTWKERLRIALESAQGLEYLHKGCNPPLIHRDVKGTNILLNTRLEAKIADFGLSKVFNPENGTHVSTNKLVGTPGYVDPEYQSTMQPTTKSDVYSFGVVLLELVTGKPAILRDPEPISIIHWAQQRLARGNIEGVVDASMHGDYDVNGLWKVADIARKCTALSSAHRPTMTDVVAQLQECLELEDKHQVSDINNGFYNGNSGDLNSNFYTT

More
Event Type Chromosome Start End Strand Alternative mRNAs Total mRNAs Source

Expression

Leaf Root Panicle
FPKM 0.0 0.0 None

Homologues

Genome & Annotation Homologs Type Expression(FPKM)
Leaf Root Panicle
Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) OsNip_05g0524732 RBH 0.0 0.000000 0.0
Nipponbare | IRGSP 1.0 | MSU LOC_Os05g44940 RBH 0.0 0.0 0.0
Nipponbare | IRGSP 1.0 | RAP-db Os05g0524732 RBH None None None
Azucena | AzucenaRS1 | Gramene(+IsoSeq) OsAzu_05g0024230 SBH 0.0 0.0 0.0
KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) OsKeNa_05g0024120 SBH 0.0 3.785832 0.0
CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) OsCMeo_05g0024100 SBH 0.0 5.074499 0.000000
ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) OsARC_05g0024060 SBH 0.0 1.170324 None
PR 106 | Os127742RS1 | Gramene(+IsoSeq) OsPr106_05g0024150 SBH 0.0 17.616816 0.0
Minghui 63 | MH63RS3 | HZAU OsMH63_05G0404100 SBH 0.0051835 0.301636 0.0027315
IR 64 | OsIR64RS1 | Gramene(+IsoSeq) OsIR64_05g0023710 RBH 0.0 0.0 0.0
Zhenshan 97 | ZS97RS3 | HZAU OsZS97_05G0416300 SBH 0.001579 0.095063 0.006649
LIMA | Os127564RS1 | Gramene(+IsoSeq) OsLima_01g0031800 SBH 0.0 0.227224 None
KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) OsKYG_05g0023790 RBH 0.0 0.0 None
GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) OsGoSa_05g0023970 RBH 0.0 3.469700 None
LIU XU | Os125827RS1 | Gramene(+IsoSeq) OsLiXu_05g0024010 SBH 0.000000 0.495400 0.0
LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) OsLaMu_05g0024020 RBH 0.0 0.000000 None
N22 | OsN22RS2 | Gramene(+IsoSeq) OsN22_05G023420 RBH 0.0 0.740263 0.0
NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) OsNaBo_05g0023820 RBH 0.0 1.645045 0.0
Powered by

© 2021- Rice Gene Index @Zhang Lab. All Rights Reserved.

National Key Laboratory of Crop Genetic Improvement

Huazhong Agricultural University

Any comments and suggestions, please contact us.