Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLima_02g0004750 | OGI:02001240 | 16/16 | LIMA | Os127564RS1 | Gramene(+IsoSeq) | Chr02:3271602-3272234 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | tcagaattgaagaaatcttagcttggatagtactatctgatctaacagcacaccaagtgcaaagaacaggccaaatgcgacgccaaagataaccttgtcactgaaatgatctgtggaaagagtggaggcaggagcatgaactgcttttgctgaattacagtggtgtctaagcataccaccacatatctttggattaccaatgaagcttgagttgtcaaatgtatcaaactgacctccagttggaataggtccttccaggtcattgttagaaacattgaaggcagaaaggaagtgcagcttgttcagttccaaagggattgcacccattagattgttgctagacaagtctagcatctccaggttggtgaggttgcaaattgcttgtgggatctctccagagaagctattgaagctcaaatcaagcatatcgagtgccttcagccgaccaatctctggagggatcaaacctgtaaagccatttctagctacatttacttctgctcggaggatgtgatattcagatttccaatctttaagtgcaggtaagtccttttttgaggacatatatgtcggtaatattaagacccttgcatcaatatcggccactgccttctctgatttaagcattggcat
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| CDS seq | atgccaatgcttaaatcagagaaggcagtggccgatattgatgcaagggtcttaatattaccgacatatatgtcctcaaaaaaggacttacctgcacttaaagattggaaatctgaatatcacatcctccgagcagaagtaaatgtagctagaaatggctttacaggtttgatccctccagagattggtcggctgaaggcactcgatatgcttgatttgagcttcaatagcttctctggagagatcccacaagcaatttgcaacctcaccaacctggagatgctagacttgtctagcaacaatctaatgggtgcaatccctttggaactgaacaagctgcacttcctttctgccttcaatgtttctaacaatgacctggaaggacctattccaactggaggtcagtttgatacatttgacaactcaagcttcattggtaatccaaagatatgtggtggtatgcttagacaccactgtaattcagcaaaagcagttcatgctcctgcctccactctttccacagatcatttcagtgacaaggttatctttggcgtcgcatttggcctgttctttgcacttggtgtgctgttagatcagatagtactatccaagctaagatttcttcaattctga
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| Protein seq | MPMLKSEKAVADIDARVLILPTYMSSKKDLPALKDWKSEYHILRAEVNVARNGFTGLIPPEIGRLKALDMLDLSFNSFSGEIPQAICNLTNLEMLDLSSNNLMGAIPLELNKLHFLSAFNVSNNDLEGPIPTGGQFDTFDNSSFIGNPKICGGMLRHHCNSAKAVHAPASTLSTDHFSDKVIFGVAFGLFFALGVLLDQIVLSKLRFLQF |
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| Function | Receptor-like protein 2 [UniProtKB/Swiss-Prot:Q9SHI3] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLima_02g0004750 | OsLima_02g0004750.01 | Chr02 | 3271602 | 3272234 | - | NAM | ||
| CDS seq | atgccaatgcttaaatcagagaaggcagtggccgatattgatgcaagggtcttaatattaccgacatatatgtcctcaaaaaaggacttacctgcacttaaagattggaaatctgaatatcacatcctccgagcagaagtaaatgtagctagaaatggctttacaggtttgatccctccagagattggtcggctgaaggcactcgatatgcttgatttgagcttcaatagcttctctggagagatcccacaagcaatttgcaacctcaccaacctggagatgctagacttgtctagcaacaatctaatgggtgcaatccctttggaactgaacaagctgcacttcctttctgccttcaatgtttctaacaatgacctggaaggacctattccaactggaggtcagtttgatacatttgacaactcaagcttcattggtaatccaaagatatgtggtggtatgcttagacaccactgtaattcagcaaaagcagttcatgctcctgcctccactctttccacagatcatttcagtgacaaggttatctttggcgtcgcatttggcctgttctttgcacttggtgtgctgttagatcagatagtactatccaagctaagatttcttcaattctga
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| Protein seq | MPMLKSEKAVADIDARVLILPTYMSSKKDLPALKDWKSEYHILRAEVNVARNGFTGLIPPEIGRLKALDMLDLSFNSFSGEIPQAICNLTNLEMLDLSSNNLMGAIPLELNKLHFLSAFNVSNNDLEGPIPTGGQFDTFDNSSFIGNPKICGGMLRHHCNSAKAVHAPASTLSTDHFSDKVIFGVAFGLFFALGVLLDQIVLSKLRFLQF
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_02g0157200 | SBH | 0.112812 | 0.464303 | 0.031146 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os02g06260 | RBH | 0.071702 | 0.293505 | 0.007535 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os02g0157200 | SBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_02g0004350 | SBH | 0.028232 | 1.169921 | 0.406737 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_02g0004510 | SBH | 0.087645 | 0.000000 | 0.391188 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_02g0004360 | SBH | 0.038443 | 0.407024 | 0.900679 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_02g0004020 | SBH | 0.031011 | 0.040793 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_02g0004110 | SBH | 2.410689 | 8.209851 | 3.171613 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_02G0050200 | SBH | 0.852885 | 2.079683 | 1.239989 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_02g0020380 | RBH | 0.0 | 0.0 | 0.0 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_02G0055500 | RBH | 0.458229 | 0.4494815 | 3.292041 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_02g0004430 | SBH | 0.000000 | 0.000000 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_02g0004210 | SBH | 0.000000 | 0.847441 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_02g0004260 | SBH | 3.191976 | 29.049385 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_02g0004210 | SBH | 0.087713 | 0.227309 | 0.100002 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_02g0004340 | SBH | 0.0 | 0.333673 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_02G004060 | SBH | 0.292437 | 2.052631 | 0.572981 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_02g0004260 | SBH | 0.000000 | 0.353235 | 0.384476 |
