Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLima_01g0004150 | OGI:01011260 | 16/16 | LIMA | Os127564RS1 | Gramene(+IsoSeq) | Chr01:3185125-3188136 | ||||||||
| Gene Symbol | KEAP1, OsKEAP1 | ||||||||||
| DNA seq | atgtctaccaggcaagctcgacgacggtactacgagacatcgttactcgtactgatgctcctcctcctacaagctaggctcgcgcaatcgcttcctccatgctcgccggaccaggccacggcgctgctccagctgaagcggtcgttcaccgtgaacagcgcgtcggccaccgccttccggtcatggcgcgccggcaccgactgctgccgatggacgggcgtccgctgcgacggcggcggcagcggccgcgtcacttccctcgatctcggcggccgcggcctgcagagcggcggccttgacgctgccgtcttcagcctcacgtcgctgaggtatctcaacctcggcggcaacgacttcaacgcgtcacagctcccggccaccgggttcgagcggctcaccgagctgacccatctcagcatctccccacccagcttcgcaggacaggtaccggcaggtataggacgcctcaccaacttggtttctctcgatttatcaactcgcttctatgtgatcaatcaagaagacgatcgtgccgatatcatggcaccttcgtttcccaactggggcttctggaaggtagattttgtgaggttggttgcaaatcttggcaatctgagggagctctatcttggctttgtgtatatgtccaatggaggggaaggatggtgcaacgctctggttaattccactccaaagattcaggttctgagcctaccattttgcaagatctcaggtcccatctgtcagtctctcttcagcttgccatatctttctgttgttgacttgcaagaaaatgacttgtatggtccaatacctgagttcttcgccgatttgtcctcccttggtgttcttcaactctcaagaaacaagttggagggtttatttccagcaaggatcttccagaacagaaaattaacaaccgtagatattagctacaactacgaaatctatggcagttttcccaatttttcacccaatagtagtttgatcaatttgcatctcagtggtaccaagttctctggtcagataccaacctccatttctaatctcacaggtctgaaagagctgggtcttagtgccaatgatttccctacagagctaccatcctctctaggaatgcttaaatccttgaacttattagaggtttctgggcaaggcctagtaggatcaatgccagcttggataacaaatctaacatctctgacagagcttcagttttctaattgtggcttgtctggatctttaccatcttccataggcaatctcagaaatctcaggagactatctttattcaagtgcagtttttctggaaacataccattgcaaatatttaacttgacacaactgcggagcttggaacttccaatcaacaactttgtggggacagtggaacttacctcattctggagactaccatatttatcagaccttgatctttcaaataataaattatctgtggtggacggtttagtcaatgactcagtagtgcgttctcccaaagtagcagaattgagcctagcatcctgcaacatatcaaagtttcccaatgcattaaagcatcaagatgagctacacgtaattgacctttcaaataaccaaatgcatggggcaatacctcgatgggcatgggaaacttggaaggaattgttcttcttggacctgtcaaataataagtttaccagtataggacacgaccctttgctcccctgcttgtacacaagatacatcaatctcagttataacatgtttgaagggcccatacctatacctaaagagaattcagactcggagttagattactcaaataatcggttttcgtctatgccatttgatttaattccttatcttgccggtatactatctctaaaggcctctaggaacaatatctctggagaaatcccatcaacattctgcactgttaagagtcttcaaatccttgacctctcctacaatatcttaagttcaattccttcttgcttaatggagaattcttcaacaataaaagtactaaacttgaaggcgaaccaacttgacggagagttgccgcacaatatcaaggaagattgtgcatttgaggcattggatttcagctacaatcgatttgaagggcaactgcccacatcattagttgcttgcaaaaacttggtggtacttgatgttgggaacaatcaaattggaggctctttcccatgttggatgcatcttcttcctaaacttcaagtccttgtcctgaagtccaataagttctatggacggttggggcctactcttaccaaagatgatgactgtgaattacagcatctccgaattcttgatctagcttcaaacaatttctcgggcatattgcctgatgaatggtttaggaaattaaaagccatgatgtcagtctccagtaacgaaatattggtcatgaaagatggagatatgtatggcacatataaccatataacatatctttttactactacggttacatataaaggacttgacttgacatttactaagatcttaaagacctttgtactaattgatgtctcaaacaataggttccatggcagcattcctgaaactattgccacactaagcgtgctcagtggtctcaacatgtcacataatgctcttacaggaccaattcccaaccagcttgctagtctgcatcaacttgaatctttggacctctcttcaaataagctttctggggagatccctcaaaaattagcatccttggacttcctatcaacattgaacctatcaaataatatgctggagggaagaataccagagtcacctcatttcttgacactccccaatagttcatttacaagaaatgctggtttgtgtgggcctccactgtcaaaagaatgcagcaacaaatcaacatcagatgcgatggcgcacctttctgaagagaaatctgtagacgttatgctatttctcttcgttggattgggttttggtgttgggtttgctattgcagttgtagtttcatggaaaccttgcattggcaaataa
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| CDS seq | atgtctaccaggcaagctcgacgacggtactacgagacatcgttactcgtactgatgctcctcctcctacaagctaggctcgcgcaatcgcttcctccatgctcgccggaccaggccacggcgctgctccagctgaagcggtcgttcaccgtgaacagcgcgtcggccaccgccttccggtcatggcgcgccggcaccgactgctgccgatggacgggcgtccgctgcgacggcggcggcagcggccgcgtcacttccctcgatctcggcggccgcggcctgcagagcggcggccttgacgctgccgtcttcagcctcacgtcgctgaggtatctcaacctcggcggcaacgacttcaacgcgtcacagctcccggccaccgggttcgagcggctcaccgagctgacccatctcagcatctccccacccagcttcgcaggacaggtaccggcaggtataggacgcctcaccaacttggtttctctcgatttatcaactcgcttctatgtgatcaatcaagaagacgatcgtgccgatatcatggcaccttcgtttcccaactggggcttctggaaggtagattttgtgaggttggttgcaaatcttggcaatctgagggagctctatcttggctttgtgtatatgtccaatggaggggaaggatggtgcaacgctctggttaattccactccaaagattcaggttctgagcctaccattttgcaagatctcaggtcccatctgtcagtctctcttcagcttgccatatctttctgttgttgacttgcaagaaaatgacttgtatggtccaatacctgagttcttcgccgatttgtcctcccttggtgttcttcaactctcaagaaacaagttccatggcagcattcctgaaactattgccacactaagcgtgctcagtggtctcaacatgtcacataatgctcttacaggaccaattcccaaccagcttgctagtctgcatcaacttgaatctttggacctctcttcaaataagctttctggggagatccctcaaaaattagcatccttggacttcctatcaacattgaacctatcaaataatatgctggagggaagaataccagagtcacctcatttcttgacactccccaatagttcatttacaagaaatgctggtttgtgtgggcctccactgtcaaaagaatgcagcaacaaatcaacatcagatgcgatggcgcacctttctgaagagaaatctgtagacgttatgctatttctcttcgttggattgggttttggtgttgggtttgctattgcagttgtagtttcatggaaaccttgcattggcaaataa
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| Protein seq | MSTRQARRRYYETSLLVLMLLLLQARLAQSLPPCSPDQATALLQLKRSFTVNSASATAFRSWRAGTDCCRWTGVRCDGGGSGRVTSLDLGGRGLQSGGLDAAVFSLTSLRYLNLGGNDFNASQLPATGFERLTELTHLSISPPSFAGQVPAGIGRLTNLVSLDLSTRFYVINQEDDRADIMAPSFPNWGFWKVDFVRLVANLGNLRELYLGFVYMSNGGEGWCNALVNSTPKIQVLSLPFCKISGPICQSLFSLPYLSVVDLQENDLYGPIPEFFADLSSLGVLQLSRNKFHGSIPETIATLSVLSGLNMSHNALTGPIPNQLASLHQLESLDLSSNKLSGEIPQKLASLDFLSTLNLSNNMLEGRIPESPHFLTLPNSSFTRNAGLCGPPLSKECSNKSTSDAMAHLSEEKSVDVMLFLFVGLGFGVGFAIAVVVSWKPCIGK |
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| Function | DNA damage-repair/toleration protein DRT100 [UniProtKB/Swiss-Prot:Q00874] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLima_01g0004150 | OsLima_01g0004150.01 | Chr01 | 3185125 | 3188136 | + | NAM | ||
| CDS seq | atgtctaccaggcaagctcgacgacggtactacgagacatcgttactcgtactgatgctcctcctcctacaagctaggctcgcgcaatcgcttcctccatgctcgccggaccaggccacggcgctgctccagctgaagcggtcgttcaccgtgaacagcgcgtcggccaccgccttccggtcatggcgcgccggcaccgactgctgccgatggacgggcgtccgctgcgacggcggcggcagcggccgcgtcacttccctcgatctcggcggccgcggcctgcagagcggcggccttgacgctgccgtcttcagcctcacgtcgctgaggtatctcaacctcggcggcaacgacttcaacgcgtcacagctcccggccaccgggttcgagcggctcaccgagctgacccatctcagcatctccccacccagcttcgcaggacaggtaccggcaggtataggacgcctcaccaacttggtttctctcgatttatcaactcgcttctatgtgatcaatcaagaagacgatcgtgccgatatcatggcaccttcgtttcccaactggggcttctggaaggtagattttgtgaggttggttgcaaatcttggcaatctgagggagctctatcttggctttgtgtatatgtccaatggaggggaaggatggtgcaacgctctggttaattccactccaaagattcaggttctgagcctaccattttgcaagatctcaggtcccatctgtcagtctctcttcagcttgccatatctttctgttgttgacttgcaagaaaatgacttgtatggtccaatacctgagttcttcgccgatttgtcctcccttggtgttcttcaactctcaagaaacaagttccatggcagcattcctgaaactattgccacactaagcgtgctcagtggtctcaacatgtcacataatgctcttacaggaccaattcccaaccagcttgctagtctgcatcaacttgaatctttggacctctcttcaaataagctttctggggagatccctcaaaaattagcatccttggacttcctatcaacattgaacctatcaaataatatgctggagggaagaataccagagtcacctcatttcttgacactccccaatagttcatttacaagaaatgctggtttgtgtgggcctccactgtcaaaagaatgcagcaacaaatcaacatcagatgcgatggcgcacctttctgaagagaaatctgtagacgttatgctatttctcttcgttggattgggttttggtgttgggtttgctattgcagttgtagtttcatggaaaccttgcattggcaaataa
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| Protein seq | MSTRQARRRYYETSLLVLMLLLLQARLAQSLPPCSPDQATALLQLKRSFTVNSASATAFRSWRAGTDCCRWTGVRCDGGGSGRVTSLDLGGRGLQSGGLDAAVFSLTSLRYLNLGGNDFNASQLPATGFERLTELTHLSISPPSFAGQVPAGIGRLTNLVSLDLSTRFYVINQEDDRADIMAPSFPNWGFWKVDFVRLVANLGNLRELYLGFVYMSNGGEGWCNALVNSTPKIQVLSLPFCKISGPICQSLFSLPYLSVVDLQENDLYGPIPEFFADLSSLGVLQLSRNKFHGSIPETIATLSVLSGLNMSHNALTGPIPNQLASLHQLESLDLSSNKLSGEIPQKLASLDFLSTLNLSNNMLEGRIPESPHFLTLPNSSFTRNAGLCGPPLSKECSNKSTSDAMAHLSEEKSVDVMLFLFVGLGFGVGFAIAVVVSWKPCIGK
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_01g0162500 | RBH | 0.310161 | 0.0 | 0.379350 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os01g06920 | SBH | 0.379553 | 0.024731 | 0.136106 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os01g0162500 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_01g0004550 | SBH | 0.130272 | 0.408965 | 1.319847 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_01g0004220 | SBH | 0.000000 | 0.0 | 0.000000 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_01g0004510 | SBH | 0.072213 | 0.764565 | 1.948779 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_01g0004200 | RBH | 0.012239 | 0.044104 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_01g0004370 | RBH | 0.675431 | 0.0 | 0.0 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_01G0056800 | SBH | 0.10463 | 0.270119 | 0.10602 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_01g0004250 | RBH | 0.024807 | 0.015142 | 0.051441 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_01G0058500 | SBH | 0.218877 | 0.3356845 | 0.6229255 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_01g0004180 | RBH | 0.026117 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_01g0004260 | RBH | 0.060693 | 1.340681 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_01g0004350 | SBH | 0.000000 | 0.000000 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_01g0004300 | RBH | 0.032240 | 0.0 | 0.000000 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_01g0004240 | SBH | 0.000000 | 0.000000 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_01G004350 | SBH | 0.072881 | 0.481987 | 0.494161 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_01g0004240 | SBH | 0.000000 | 1.917465 | 0.922602 |
