Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLima_01g0004180 | OGI:01011260 | 16/16 | LIMA | Os127564RS1 | Gramene(+IsoSeq) | Chr01:3192404-3195575 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | atgtcacctcgggtagcccaacgagagaacgagccattgttacttgtactcgtcctcctcctcctcctacaaaccttgatcgcgagctcgcttccatgcttgccggaccaggccgcggcgctgctccagctgaagcggtcgttctcggcgaccaccgcgttccggtcatggcgcgccggcaccgactgctgccgctgggagggcgtccgctgcgacggcgacggcggcggcggcggccgcgtcacttccctcgatctcggcggccgacgcctgcagagcggcggccttgacgccgccgtcttcagcctcacgtcgctgaggcatctcaacctcggcggcaacgacttcaacgcgtcacagctCccggccaccggattcgagatgctcaccgagctcacccatctcaacatctccccacccagcttcgcaggccagataccggcaggtataggacgcctcaccaacttggtttctcttgacctgtcatctagcatctacatcgtaaatcaaggagatgacgatgtcagtatcatgtcaaatttgttacccccctggggattctcgagggtaaacttcgagaagttgattgcaaatcttggtaatctgagggagctctatcttggattggtgtacatgtccaacggaggcgaagggtggtgcaatgctctggctaattccactcctaagattcaggttctgagcctaccattatgccagatctctggtcccatttgccaatctctgtttagtttgcgatccctttctgttgttgacttgcaaggaaatgacctgtctggcgccatacctgaattcttcgctgatttgtcctcacttagtgttcttcagcTttcaagaaataagtttgagggtttgtttccgcaaaggatcttccagaacagaaaactgacagctattgatattagctacaactatgaagtttatggtgatttgcccaattttccacctaatagcagtttgatcaaattgcatgtcagtggcaccaagttctcaggttacataccaagCTctatttctaatctcacgggtctgaaggagctgggtctgagtgcaaatgatttccctacagaactgccgtcttctctaggaatgcttaaatccttgaacttatttgaggtttcggggctcggcctagtaggatcaatgccagcttggataacaaatctaacatctttgacagatctccaaatttctcattgtagcttgtctggatctttaccatcttccataggcaatctcaagaatctcaaaagactgtctttattcAaaagcaacttcactggaaacataccattgcaaatctttaacttgacacaactgcatagcttgcatcttccactaaacaacttcgtggggacagtggaacttacctcattctggagactaccatacttatcacaccttgatctttcaaataataaattatctgtggtggacgggttagtcaatgattcagcagtgtcctctcccaaagtaaaattcttgagcctagcttcctgcaacatatcaaagtttcccaatgcattaagacatcaagataagataatcttccttgacctttcaaataaccaaatgcatggggcaatacctccatgggcatgggaaacttggaaagaattgttcttcttggacctatcaaataacaaatttaccagTcttggacatgacactttgctccccctgtacacaagATatatcaatctcagttataatatgtttgaaggacccatacctatacctaaagagagtacagactctcagttggattactcgaataatcggTtttcttctatgccgtttgatctaattccatatcttgctggtacactatctctaaaggtctctatgaacaatgtctctggagaagtcccatcaacattttgtactgttaagagtcttcaaatccttgacctttcctacaatatcttaaatggctcaattccttccTgtctgatggagaattcatcaacactaaaaatattaaatttgaggggaaacgaacttcgcggagagttgccacataatatgaaggaagactctgcatttgaggcattggatgtcagctataattggattgaagggacactacctaaatcattagtaacttgcaaaaacttggtggtacttaatgttgggaacaatcaaattggaggctcttttccatgttggatgcatcttcttcctaaactccaagtccttgtcctgaagtccaataagttctacggacagttggggcctactcttgctaaagatgatgaatgtgaactacagtatctccgaattcttgatctagcttcaaacaacttctcgggagtattgccttatgaatggtttaggaaactaaaatccatgatgtcagTCtccagtaacgaaacattggtcatgaaagatggagatatgtacagcacatttaaccatataacatatcTTTttactgctagatttacatataaaggactggacatgatgtttcctaagatcttaaagacctttgtactaattgatgtctccaataatagattctatggcagcattcctgaaactattgccacactaagcatgctcaatggtctcaacatgtcacataatgctcttacaggaccaattcccaaccagcttgctagtctgcatcaacTtgagtctttggacctctcatcaaataagctttctggggagatccctcaaaaattagcatccttggacttcctatcaacattgaacctatccgataatatgctggagggaagaataccggagtcacctcatttcttgacactccccaatagttcatttatacgaaatgctggactgtgtgggcctccattgtcgaaagaatgcagcaacaaatcaacatcaaatgtgatgccacatctttccgaagagaaatctgcagacgttatactatttctctttgttggattgggttttggtgttgggtttgctattgcaattgtagtgaggaaACCttgcattggcaaataatcttcatcaaatccacccatttttatatttatatgttcaggagtttgccagtctgcttccccttgtaaatttagctgtcattatagctagcctgtatgatttatagtactatgtgcacgtacaacatttttttccatcatcatgcatcctataagattagtgttgaaaattt
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| CDS seq | atgtcacctcgggtagcccaacgagagaacgagccattgttacttgtactcgtcctcctcctcctcctacaaaccttgatcgcgagctcgcttccatgcttgccggaccaggccgcggcgctgctccagctgaagcggtcgttctcggcgaccaccgcgttccggtcatggcgcgccggcaccgactgctgccgctgggagggcgtccgctgcgacggcgacggcggcggcggcggccgcgtcacttccctcgatctcggcggccgacgcctgcagagcggcggccttgacgccgccgtcttcagcctcacgtcgctgaggcatctcaacctcggcggcaacgacttcaacgcgtcacagctCccggccaccggattcgagatgctcaccgagctcacccatctcaacatctccccacccagcttcgcaggccagataccggcaggtataggacgcctcaccaacttggtttctcttgacctgtcatctagcatctacatcgtaaatcaaggagatgacgatgtcagtatcatgtcaaatttgttacccccctggggattctcgagggtaaacttcgagaagttgattgcaaatcttggtaatctgagggagctctatcttggattggtgtacatgtccaacggaggcgaagggtggtgcaatgctctggctaattccactcctaagattcaggttctgagcctaccattatgccagatctctggtcccatttgccaatctctgtttagtttgcgatccctttctgttgttgacttgcaaggaaatgacctgtctggcgccatacctgaattcttcgctgatttgtcctcacttagtgttcttcagcTttcaagaaataagtttgagggtttgtttccgcaaaggatcttccagaacagaaaactgacagctattgatattagctacaactatgaagtttatggtgatttgcccaattttccacctaatagcagtttgatcaaattgcatgtcagtggcaccaagttctcaggttacataccaagCTctatttctaatctcacgggtctgaaggagctgggtctgagtgcaaatgatttccctacagaactgccgtcttctctaggaatgcttaaatccttgaacttatttgaggtttcggggctcggcctagtaggatcaatgccagcttggataacaaatctaacatctttgacagatctccaaatttctcattgtagcttgtctggatctttaccatcttccataggcaatctcaagaatctcaaaagactgtctttattcAaaagcaacttcactggaaacataccattgcaaatctttaacttgacacaactgcatagcttgcatcttccactaaacaacttcgtggggacagtggaacttacctcattctggagactaccatacttatcacaccttgatctttcaaataataaattatctgtggtggacgggttagtcaatgattcagcagtgtcctctcccaaagtaaaattcttgagcctagcttcctgcaacatatcaaagtttcccaatgcattaagacatcaagataagataatcttccttgacctttcaaataaccaaatgcatggggcaatacctccatgggcatgggaaacttggaaagaattgttcttcttggacctatcaaataacaaatttaccagTcttggacatgacactttgctccccctgtacacaagATatatcaatctcagttataatatgtttgaaggacccatacctatacctaaagagagtacagactctcagttggattactcgaataatcggTtttcttctatgccgtttgatctaattccatatcttgctggtacactatctctaaaggtctctatgaacaatgtctctggagaagtcccatcaacattttgtactgttaagagtcttcaaatccttgacctttcctacaatatcttaaatggctcaattccttccTgtctgatggagaattcatcaacactaaaaatattaaatttgaggggaaacgaacttcgcggagagttgccacataatatgaaggaagactctgcatttgaggcattggatgtcagctataattggattgaagggacactacctaaatcattagtaacttgcaaaaacttggtggtacttaatgttgggaacaatcaaattggaggctcttttccatgttggatgcatcttcttcctaaactccaagtccttgtcctgaagtccaataagttctacggacagttggggcctactcttgctaaagatgatgaatgtgaactacagtatctccgaattcttgatctagcttcaaacaacttctcgggagtattgccttatgaatggtttaggaaactaaaatccatgatgtcagTCtccagtaacgaaacattggtcatgaaagatggagatatgtacagcacatttaaccatataacatatcTTTttactgctagatttacatataaaggactggacatgatgtttcctaagatcttaaagacctttgtactaattgatgtctccaataatagattctatggcagcattcctgaaactattgccacactaagcatgctcaatggtctcaacatgtcacataatgctcttacaggaccaattcccaaccagcttgctagtctgcatcaacTtgagtctttggacctctcatcaaataagctttctggggagatccctcaaaaattagcatccttggacttcctatcaacattgaacctatccgataatatgctggagggaagaataccggagtcacctcatttcttgacactccccaatagttcatttatacgaaatgctggactgtgtgggcctccattgtcgaaagaatgcagcaacaaatcaacatcaaatgtgatgccacatctttccgaagagaaatctgcagacgttatactatttctctttgttggattgggttttggtgttgggtttgctattgcaattgtagtgaggaaACCttgcattggcaaataa
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| Protein seq | MSPRVAQRENEPLLLVLVLLLLLQTLIASSLPCLPDQAAALLQLKRSFSATTAFRSWRAGTDCCRWEGVRCDGDGGGGGRVTSLDLGGRRLQSGGLDAAVFSLTSLRHLNLGGNDFNASQLPATGFEMLTELTHLNISPPSFAGQIPAGIGRLTNLVSLDLSSSIYIVNQGDDDVSIMSNLLPPWGFSRVNFEKLIANLGNLRELYLGLVYMSNGGEGWCNALANSTPKIQVLSLPLCQISGPICQSLFSLRSLSVVDLQGNDLSGAIPEFFADLSSLSVLQLSRNKFEGLFPQRIFQNRKLTAIDISYNYEVYGDLPNFPPNSSLIKLHVSGTKFSGYIPSSISNLTGLKELGLSANDFPTELPSSLGMLKSLNLFEVSGLGLVGSMPAWITNLTSLTDLQISHCSLSGSLPSSIGNLKNLKRLSLFKSNFTGNIPLQIFNLTQLHSLHLPLNNFVGTVELTSFWRLPYLSHLDLSNNKLSVVDGLVNDSAVSSPKVKFLSLASCNISKFPNALRHQDKIIFLDLSNNQMHGAIPPWAWETWKELFFLDLSNNKFTSLGHDTLLPLYTRYINLSYNMFEGPIPIPKESTDSQLDYSNNRFSSMPFDLIPYLAGTLSLKVSMNNVSGEVPSTFCTVKSLQILDLSYNILNGSIPSCLMENSSTLKILNLRGNELRGELPHNMKEDSAFEALDVSYNWIEGTLPKSLVTCKNLVVLNVGNNQIGGSFPCWMHLLPKLQVLVLKSNKFYGQLGPTLAKDDECELQYLRILDLASNNFSGVLPYEWFRKLKSMMSVSSNETLVMKDGDMYSTFNHITYLFTARFTYKGLDMMFPKILKTFVLIDVSNNRFYGSIPETIATLSMLNGLNMSHNALTGPIPNQLASLHQLESLDLSSNKLSGEIPQKLASLDFLSTLNLSDNMLEGRIPESPHFLTLPNSSFIRNAGLCGPPLSKECSNKSTSNVMPHLSEEKSADVILFLFVGLGFGVGFAIAIVVRKPCIGK |
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| Function | Receptor-like protein 7 [UniProtKB/Swiss-Prot:Q9C699] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLima_01g0004180 | OsLima_01g0004180.01 | Chr01 | 3192404 | 3195575 | + | NAM | ||
| CDS seq | atgtcacctcgggtagcccaacgagagaacgagccattgttacttgtactcgtcctcctcctcctcctacaaaccttgatcgcgagctcgcttccatgcttgccggaccaggccgcggcgctgctccagctgaagcggtcgttctcggcgaccaccgcgttccggtcatggcgcgccggcaccgactgctgccgctgggagggcgtccgctgcgacggcgacggcggcggcggcggccgcgtcacttccctcgatctcggcggccgacgcctgcagagcggcggccttgacgccgccgtcttcagcctcacgtcgctgaggcatctcaacctcggcggcaacgacttcaacgcgtcacagctCccggccaccggattcgagatgctcaccgagctcacccatctcaacatctccccacccagcttcgcaggccagataccggcaggtataggacgcctcaccaacttggtttctcttgacctgtcatctagcatctacatcgtaaatcaaggagatgacgatgtcagtatcatgtcaaatttgttacccccctggggattctcgagggtaaacttcgagaagttgattgcaaatcttggtaatctgagggagctctatcttggattggtgtacatgtccaacggaggcgaagggtggtgcaatgctctggctaattccactcctaagattcaggttctgagcctaccattatgccagatctctggtcccatttgccaatctctgtttagtttgcgatccctttctgttgttgacttgcaaggaaatgacctgtctggcgccatacctgaattcttcgctgatttgtcctcacttagtgttcttcagcTttcaagaaataagtttgagggtttgtttccgcaaaggatcttccagaacagaaaactgacagctattgatattagctacaactatgaagtttatggtgatttgcccaattttccacctaatagcagtttgatcaaattgcatgtcagtggcaccaagttctcaggttacataccaagCTctatttctaatctcacgggtctgaaggagctgggtctgagtgcaaatgatttccctacagaactgccgtcttctctaggaatgcttaaatccttgaacttatttgaggtttcggggctcggcctagtaggatcaatgccagcttggataacaaatctaacatctttgacagatctccaaatttctcattgtagcttgtctggatctttaccatcttccataggcaatctcaagaatctcaaaagactgtctttattcAaaagcaacttcactggaaacataccattgcaaatctttaacttgacacaactgcatagcttgcatcttccactaaacaacttcgtggggacagtggaacttacctcattctggagactaccatacttatcacaccttgatctttcaaataataaattatctgtggtggacgggttagtcaatgattcagcagtgtcctctcccaaagtaaaattcttgagcctagcttcctgcaacatatcaaagtttcccaatgcattaagacatcaagataagataatcttccttgacctttcaaataaccaaatgcatggggcaatacctccatgggcatgggaaacttggaaagaattgttcttcttggacctatcaaataacaaatttaccagTcttggacatgacactttgctccccctgtacacaagATatatcaatctcagttataatatgtttgaaggacccatacctatacctaaagagagtacagactctcagttggattactcgaataatcggTtttcttctatgccgtttgatctaattccatatcttgctggtacactatctctaaaggtctctatgaacaatgtctctggagaagtcccatcaacattttgtactgttaagagtcttcaaatccttgacctttcctacaatatcttaaatggctcaattccttccTgtctgatggagaattcatcaacactaaaaatattaaatttgaggggaaacgaacttcgcggagagttgccacataatatgaaggaagactctgcatttgaggcattggatgtcagctataattggattgaagggacactacctaaatcattagtaacttgcaaaaacttggtggtacttaatgttgggaacaatcaaattggaggctcttttccatgttggatgcatcttcttcctaaactccaagtccttgtcctgaagtccaataagttctacggacagttggggcctactcttgctaaagatgatgaatgtgaactacagtatctccgaattcttgatctagcttcaaacaacttctcgggagtattgccttatgaatggtttaggaaactaaaatccatgatgtcagTCtccagtaacgaaacattggtcatgaaagatggagatatgtacagcacatttaaccatataacatatcTTTttactgctagatttacatataaaggactggacatgatgtttcctaagatcttaaagacctttgtactaattgatgtctccaataatagattctatggcagcattcctgaaactattgccacactaagcatgctcaatggtctcaacatgtcacataatgctcttacaggaccaattcccaaccagcttgctagtctgcatcaacTtgagtctttggacctctcatcaaataagctttctggggagatccctcaaaaattagcatccttggacttcctatcaacattgaacctatccgataatatgctggagggaagaataccggagtcacctcatttcttgacactccccaatagttcatttatacgaaatgctggactgtgtgggcctccattgtcgaaagaatgcagcaacaaatcaacatcaaatgtgatgccacatctttccgaagagaaatctgcagacgttatactatttctctttgttggattgggttttggtgttgggtttgctattgcaattgtagtgaggaaACCttgcattggcaaataa
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| Protein seq | MSPRVAQRENEPLLLVLVLLLLLQTLIASSLPCLPDQAAALLQLKRSFSATTAFRSWRAGTDCCRWEGVRCDGDGGGGGRVTSLDLGGRRLQSGGLDAAVFSLTSLRHLNLGGNDFNASQLPATGFEMLTELTHLNISPPSFAGQIPAGIGRLTNLVSLDLSSSIYIVNQGDDDVSIMSNLLPPWGFSRVNFEKLIANLGNLRELYLGLVYMSNGGEGWCNALANSTPKIQVLSLPLCQISGPICQSLFSLRSLSVVDLQGNDLSGAIPEFFADLSSLSVLQLSRNKFEGLFPQRIFQNRKLTAIDISYNYEVYGDLPNFPPNSSLIKLHVSGTKFSGYIPSSISNLTGLKELGLSANDFPTELPSSLGMLKSLNLFEVSGLGLVGSMPAWITNLTSLTDLQISHCSLSGSLPSSIGNLKNLKRLSLFKSNFTGNIPLQIFNLTQLHSLHLPLNNFVGTVELTSFWRLPYLSHLDLSNNKLSVVDGLVNDSAVSSPKVKFLSLASCNISKFPNALRHQDKIIFLDLSNNQMHGAIPPWAWETWKELFFLDLSNNKFTSLGHDTLLPLYTRYINLSYNMFEGPIPIPKESTDSQLDYSNNRFSSMPFDLIPYLAGTLSLKVSMNNVSGEVPSTFCTVKSLQILDLSYNILNGSIPSCLMENSSTLKILNLRGNELRGELPHNMKEDSAFEALDVSYNWIEGTLPKSLVTCKNLVVLNVGNNQIGGSFPCWMHLLPKLQVLVLKSNKFYGQLGPTLAKDDECELQYLRILDLASNNFSGVLPYEWFRKLKSMMSVSSNETLVMKDGDMYSTFNHITYLFTARFTYKGLDMMFPKILKTFVLIDVSNNRFYGSIPETIATLSMLNGLNMSHNALTGPIPNQLASLHQLESLDLSSNKLSGEIPQKLASLDFLSTLNLSDNMLEGRIPESPHFLTLPNSSFIRNAGLCGPPLSKECSNKSTSNVMPHLSEEKSADVILFLFVGLGFGVGFAIAIVVRKPCIGK
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.026117 | 0.0 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_01g0163000 | RBH | 0.534940 | 0.040219 | 0.578323 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os01g06920 | RBH | 0.379553 | 0.024731 | 0.136106 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os01g0163000 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_01g0004550 | RBH | 0.130272 | 0.408965 | 1.319847 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_01g0004260 | RBH | 0.0 | 0.0 | 0.215217 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_01g0004510 | RBH | 0.072213 | 0.764565 | 1.948779 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_01g0004200 | SBH | 0.012239 | 0.044104 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_01g0004400 | RBH | 0.0 | 0.0 | 1.069442 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_01G0057600 | RBH | 0 | 0 | 0 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_01g0004310 | RBH | 0.000000 | 0.000000 | 0.131705 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_01G0058500 | RBH | 0.218877 | 0.3356845 | 0.6229255 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_01g0004150 | RBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_01g0004320 | SBH | 0.105607 | 0.975155 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_01g0004390 | RBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_01g0004350 | RBH | 0.0 | 0.0 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_01g0004290 | RBH | 0.0 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_01G004350 | RBH | 0.072881 | 0.481987 | 0.494161 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_01g0004240 | RBH | 0.000000 | 1.917465 | 0.922602 |
