Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLiXu_11g0017530 | OGI:11010520 | 16/16 | LIU XU | Os125827RS1 | Gramene(+IsoSeq) | Chr11:24553292-24553687 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | tcagagcaaatttgtgctcagattcagcatctgaagcttgctgagatgaccaagatctgaaggtatctgcccgacaagctggttgttgccaaggtccagtgtcttgagaaaggataggttgcccaagaacggcgatatgcgcccagaaaggccgaaagagtttatttgcagcgcaatgaccctctcaggctgccgacggctgcaactaactcctgtccagctgcagaagtggctggatgagttccatgatgccatcaaacccaaggatgggcttgacagcatggacttgaaggataggagggcgagctcatcggccgtggcattgctgctgctctcagcagagaccaaggccagagcataggaacagaagagcaacaacatcattgcccgctccat |
||||||||||
| CDS seq | atggagcgggcaatgatgttgttgctcttctgttcctatgctctggccttggtctctgctgagagcagcagcaatgccacggccgatgagctcgccctcctatccttcaagtccatgctgtcaagcccatccttgggtttgatggcatcatggaactcatccagccacttctgcagctggacaggagttagttgcagccgtcggcagcctgagagggtcattgcgctgcaaataaactctttcggcctttctgggcgcatatcgccgttcttgggcaacctatcctttctcaagacactggaccttggcaacaaccagcttgtcgggcagataccttcagatcttggtcatctcagcaagcttcagatgctgaatctgagcacaaatttgctctga |
||||||||||
| Protein seq | MERAMMLLLFCSYALALVSAESSSNATADELALLSFKSMLSSPSLGLMASWNSSSHFCSWTGVSCSRRQPERVIALQINSFGLSGRISPFLGNLSFLKTLDLGNNQLVGQIPSDLGHLSKLQMLNLSTNLL |
||||||||||
| Function | LRR receptor-like serine/threonine-protein kinase EFR [UniProtKB/Swiss-Prot:C0LGT6] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLiXu_11g0017530 | OsLiXu_11g0017530.01 | Chr11 | 24553292 | 24553687 | - | NAM | ||
| CDS seq | atggagcgggcaatgatgttgttgctcttctgttcctatgctctggccttggtctctgctgagagcagcagcaatgccacggccgatgagctcgccctcctatccttcaagtccatgctgtcaagcccatccttgggtttgatggcatcatggaactcatccagccacttctgcagctggacaggagttagttgcagccgtcggcagcctgagagggtcattgcgctgcaaataaactctttcggcctttctgggcgcatatcgccgttcttgggcaacctatcctttctcaagacactggaccttggcaacaaccagcttgtcgggcagataccttcagatcttggtcatctcagcaagcttcagatgctgaatctgagcacaaatttgctctga
More
|
|||||||
| Protein seq | MERAMMLLLFCSYALALVSAESSSNATADELALLSFKSMLSSPSLGLMASWNSSSHFCSWTGVSCSRRQPERVIALQINSFGLSGRISPFLGNLSFLKTLDLGNNQLVGQIPSDLGHLSKLQMLNLSTNLL |
|||||||
| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.000000 | 0.0 | 0.000000 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_11g0569500 | SBH | 0.0 | 0.140432 | 1.323186 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os11g36150 | SBH | 0.0 | 0.092781 | 0.339087 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os11g0569500 | SBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_11g0017830 | SBH | 0.128877 | 6.788608 | 1.696541 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_11g0017970 | RBH | 0.313666 | 0.0 | 0.250769 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_11g0017770 | SBH | 0.164332 | 9.540369 | 4.595458 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_11g0017400 | SBH | 0.000000 | 0.133228 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_11g0017810 | RBH | 0.954121 | 0.0 | 1.531730 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_11G0331700 | RBH | 1.8375725 | 7.439747 | 4.6126405 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_11g0018280 | RBH | 0.214398 | 0.0 | 0.0 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_11G0344600 | SBH | 0 | 0 | 0 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_11g0018080 | SBH | 0.068635 | 0.000000 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_11g0018210 | SBH | 0.000000 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_11g0017720 | RBH | 5.948813 | 12.354786 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_Ung0072360 | SBH | 0.000000 | 0.0 | 0.000000 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_11g0017660 | SBH | 0.123759 | 0.667272 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_11G017730 | RBH | 0.395918 | 0.0 | 0.0 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_11g0018020 | RBH | 0.0 | 0.0 | 1.174825 |
