Rice Gene Index (RGI): a comprehensive pan-genome database for comparative and functional genomics of Asian rice.

Basic Info

Gene ID		OGI # \| Score			Accession \| Assembly \| Annotation			Location		Links
OsLiXu_03g0027731		OGI:06079200 \| 9/16			LIU XU \| Os125827RS1 \| Gramene(+IsoSeq)			Chr03:27813773-27813893		Homologues MicroCollinearity RGI-JBrowse
Gene Symbol		-
DNA seq		TATCCAGATTTTGTTCTCTCGCTATCCGTTGACAGGGTAGAGGCTCTGTTATCCAATTATTATCCTAAATAGGATTTTTTTTCTTCTACTAGTCCGCTCTATATTCCATAGTGGAAATACT
CDS seq		TATCCAGATTTTGTTCTCTCGCTATCCGTTGACAGGGTAGAGGCTCTGTTATCCAATTATTATCCT
Protein seq		YPDFVLSLSVDRVEALLSNYYP
Function		-

Transcripts

Gene	Transcript	Chromosome	Start	End	Strand	Source
OsLiXu_03g0027731	OsLiXu_03g0027731.01	Chr03	27813773	27813893	+	IsoSeq
CDS seq	TATCCAGATTTTGTTCTCTCGCTATCCGTTGACAGGGTAGAGGCTCTGTTATCCAATTATTATCCT
Protein seq	YPDFVLSLSVDRVEALLSNYYP

Event Type

Chromosome

Start

End

Strand

Alternative mRNAs

Total mRNAs

Source

Expression

	Leaf	Root	Panicle
FPKM	2.345809	0.0	3.551861

Homologues

Genome & Annotation	Homologs	Type	Expression(FPKM)
Genome & Annotation	Homologs	Type	Leaf	Root	Panicle
Nipponbare \| IRGSP 1.0 \| Gramene(+IsoSeq)	OsNip_06g067809A	RBH	57.876099	62.991142	36.943836
Nipponbare \| IRGSP 1.0 \| MSU	LOC_Os07g22504	RBH	13.353510	12.003896	2.992013
Nipponbare \| IRGSP 1.0 \| RAP-db	NA	NA	NA	NA	NA
Azucena \| AzucenaRS1 \| Gramene(+IsoSeq)	OsAzu_06g0026300	RBH	154.927185	28.674225	193.346512
KETAN NANGKA \| Os128077RS1 \| Gramene(+IsoSeq)	NA	NA	NA	NA	NA
CHAO MEO \| Os132278RS1 \| Gramene(+IsoSeq)	OsCMeo_07g0011360	SBH	41.331852	7.853154	31.895985
ARC 10497 \| Os117425RS1 \| Gramene(+IsoSeq)	NA	NA	NA	NA	NA
PR 106 \| Os127742RS1 \| Gramene(+IsoSeq)	NA	NA	NA	NA	NA
Minghui 63 \| MH63RS3 \| HZAU	NA	NA	NA	NA	NA
IR 64 \| OsIR64RS1 \| Gramene(+IsoSeq)	OsIR64_11g0009960	SBH	126.473465	2.146509	44.857071
Zhenshan 97 \| ZS97RS3 \| HZAU	OsZS97_10G0079200	RBH	897.621124	35.772089	44.932182
LIMA \| Os127564RS1 \| Gramene(+IsoSeq)	NA	NA	NA	NA	NA
KHAO YAI GUANG \| Os127518RS1 \| Gramene(+IsoSeq)	NA	NA	NA	NA	NA
GOBOL SAIL \| Os132424RS1 \| Gramene(+IsoSeq)	NA	NA	NA	NA	NA
LIU XU \| Os125827RS1 \| Gramene(+IsoSeq)	OsLiXu_Ung0021420	SBH	192.702103	0.0	63.500420
LARHA MUGAD \| Os125619RS1 \| Gramene(+IsoSeq)	NA	NA	NA	NA	NA
N22 \| OsN22RS2 \| Gramene(+IsoSeq)	OsN22_06G015401	SBH	322.471252	5.319046	260.323944
NATEL BORO \| Os127652RS1 \| Gramene(+IsoSeq)	OsNaBo_04g0004730	SBH	249.024536	100.564789	261.998260

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National Key Laboratory of Crop Genetic Improvement

Huazhong Agricultural University

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