Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsN22_06G015401 | OGI:06079200 | 9/16 | N22 | OsN22RS2 | Gramene(+IsoSeq) | Chr06:15738233-15740605 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | AATAATTAGACATAGAATCTTCTAAACAAAGGGACACATATAATAATAATATGAAATATTAACATGAATACTATTTATTATTTGAGAATATCTATTTTTTGAGTAGGTTATTCCATAGTATTCTTTTTTACTTAGTTGAATTTTTGCAATTCATTGATATTGCAATTTGAATATTGCAATAATTTATATTGAAAAGACGATAGCCAATTTATTGGCTAATTCGAATTCGTATATACAATTCGTATAATTATGATTGTTGAAGCCCAAAATTAAAGTCTCTTGGCTCTTTTCATGCTTTCTCACAAACGGATTAAGAAATATATTGCATTATTTGTTGAAGTTTGGATAAACCATTGCTTCGTCTGGTGTCTACAATACATTTGATTGATATAGTACTAATTTCATTTTGACCAGATCGAAAATTTTTATGTTGAAAAGGAAAATTTATAGATCCAATGTCACATTCCGTAAAAATTTATGATACATGTATAGGATGCACTCAATGTGTACGAGCTTGTCCAACAGATGTATTAGAAATGATACCTTGGGATGGATGTAAAGCCAAGCAAATTGCTTCCGCGCCAAGAACCGAAGATTGTGTGGGTTGTAAGAGATGCGAATCCGCCTGCCCAACAGATTTTTTAAGTGTCCGCGTTTATTTAGGACCTGAGACAACCCGCAGCATGGCTCTATCTTATTGATACGTTACAAAAAATTCCACTTGAATCGTCTGATTCCTCTTTACCGAAGAAGCCTGTGCTCAAAATAATCGAGCACGGGCTTTTCTGGTCAAAACGTATCTTGTCTTTATCACTTTATCATGAGTTCTTTTCCTTGGTTAACAATACTTGTTGTTTTGCCGATATTTGCGGGTTCATTAATTTTCTTTTTACCTCATAGGGGAAACAAAATCGTTAGGTGGTATACTATGTCTATTTGTTTATTAGAATTCCTTCTAATGACTTATGCATTCTGTTATCATTTCCAATTGGAGGATCCCTTAATCCAATTAAAAGAGGATTCTAAATGGATAGATGTCTTCAATTTCCACTGGAGATTGGGAATCGATGGACTTTCATTAGGATCTATTTTATTGACAGGATTTATGACTACTTTAGCTACTTTAGCAGCTTGGCCGGTTACCCGGAATTCCCGATTATTCTATTTCCTGATGCTAGCAATGTATAGCGGTCAAATAGGATTATTTTCTTCGCGAGACCTTTTACTTTTTTTTATCATGTGGGAGTTAGAATTAATTCCTGTTTACTTACTTTTATCCATGTGGGGGGGGGAAGAGGCGTCTCTATTCAGCTACAAAGTTTATTTTGTATACTGCAGGTGGTTCCATTTTTTTCTTAATCGGAGTTCTAGGTATGGGCTTATACGGTTCCAACGAACCAAGATTAGATTTGGAAAGATTAATTAATCAATCATACCCTGCAACATTGGAAATACTCTTTTATTTTGGCTTCCTTATTGCTTATGCTGTCAAATTGCCGATTATACCCCTACATACGTGGTTACCAGATACCCATGGGGAAGCGCATTACAGTACATGTATGCTTTTAGCGGGAATCCTATTAAAGATGGGAGCATACGGATTGATTCGGATCAATATGGAATTGTTACCTCATGCTCATTATCTATTTTCCCCTTGGTTAGTAATAATAGGAGCGATGCAAATAATCTATGCAGCTTCAACTTCTCTTGGCCAACGCAATTTCAAAAAAAGAATAGCCTACTCCTCCGTCTCTCACATGGGTTTCATTATTATAGGAATTGGTTCCATAACCAACATTGGACTCAATGGAGCTATTTTACAAATATTATCCCATGGATTTATTGGGGCTACACTTTTTTTCTTAGCGGGAACGGCTTGTGATAGAATGCGCCTTGTTTATCTCGAAGAACTGGGAGGGGTTTCTATCCCAATGCCAAAAATTTTTACCATGTTTAGTAGCTTTTCAATGGCTTCTCTTGCCTTACCAGGAATGAGTGGTTTTGTTGCGGAATTAGTAGTATTTTTTGGACTAATTACTAGTCCAAAATTTCTGTTAATGCCAAAAATGCTAATTACTTTTGTAATGGCAATTGGAATGATATTAACTCCTATTTATTTATTATCTATGTTACGACAGATGTTCTATGGATACAAGCTATTTCATGTTCCAAACGAAAATTTTGAGGATTCCGGCCCGCGAGAACTCTTTCTTTTAATCTGTATCTTTTTACCAGTAATAGGAATCGGTATTTATCCAGATTTTGTTCTCTCGCTATCCGTTGACAGGGTAGAGGCTCTGTTATCCAATTATTATCCTAAATAGGATTTTTTTTCTTCTACTAGTCCGCTCTATATTCCATAGTGGAAATACT
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| CDS seq | ATGGGCTTATACGGTTCCAACGAACCAAGATTAGATTTGGAAAGATTAATTAATCAATCATACCCTGCAACATTGGAAATACTCTTTTATTTTGGCTTCCTTATTGCTTATGCTGTCAAATTGCCGATTATACCCCTACATACGTGGTTACCAGATACCCATGGGGAAGCGCATTACAGTACATGTATGCTTTTAGCGGGAATCCTATTAAAGATGGGAGCATACGGATTGATTCGGATCAATATGGAATTGTTACCTCATGCTCATTATCTATTTTCCCCTTGGTTAGTAATAATAGGAGCGATGCAAATAATCTATGCAGCTTCAACTTCTCTTGGCCAACGCAATTTCAAAAAAAGAATAGCCTACTCCTCCGTCTCTCACATGGGTTTCATTATTATAGGAATTGGTTCCATAACCAACATTGGACTCAATGGAGCTATTTTACAAATATTATCCCATGGATTTATTGGGGCTACACTTTTTTTCTTAGCGGGAACGGCTTGTGATAGAATGCGCCTTGTTTATCTCGAAGAACTGGGAGGGGTTTCTATCCCAATGCCAAAAATTTTTACCATGTTTAGTAGCTTTTCAATGGCTTCTCTTGCCTTACCAGGAATGAGTGGTTTTGTTGCGGAATTAGTAGTATTTTTTGGACTAATTACTAGTCCAAAATTTCTGTTAATGCCAAAAATGCTAATTACTTTTGTAATGGCAATTGGAATGATATTAACTCCTATTTATTTATTATCTATGTTACGACAGATGTTCTATGGATACAAGCTATTTCATGTTCCAAACGAAAATTTTGAGGATTCCGGCCCGCGAGAACTCTTTCTTTTAATCTGTATCTTTTTACCAGTAATAGGAATCGGTATTTATCCAGATTTTGTTCTCTCGCTATCCGTTGACAGGGTAGAGGCTCTGTTATCCAATTATTATCCT
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| Protein seq | MGLYGSNEPRLDLERLINQSYPATLEILFYFGFLIAYAVKLPIIPLHTWLPDTHGEAHYSTCMLLAGILLKMGAYGLIRINMELLPHAHYLFSPWLVIIGAMQIIYAASTSLGQRNFKKRIAYSSVSHMGFIIIGIGSITNIGLNGAILQILSHGFIGATLFFLAGTACDRMRLVYLEELGGVSIPMPKIFTMFSSFSMASLALPGMSGFVAELVVFFGLITSPKFLLMPKMLITFVMAIGMILTPIYLLSMLRQMFYGYKLFHVPNENFEDSGPRELFLLICIFLPVIGIGIYPDFVLSLSVDRVEALLSNYYP |
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| Function | NAD(P)H-quinone oxidoreductase chain 4, chloroplastic [UniProtKB/Swiss-Prot:P0C325] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsN22_06G015401 | OsN22_06G015401_01 | Chr06 | 15738233 | 15738665 | + | IsoSeq | ||
| CDS seq | ATGCTTTCTCACAAACGGATTAAGAAATATATTGCATTATTTGTTGAAGTTTGGATAAACCATTGCTTCGTCTGGTGTCTACAATAC |
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| Protein seq | MLSHKRIKKYIALFVEVWINHCFVWCLQY |
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsN22_06G015401 | OsN22_06G015401_02 | Chr06 | 15738286 | 15738497 | + | IsoSeq | ||
| CDS seq | AATATTAACATGAATACTATTTATTATTTGAGAATATCTATT |
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| Protein seq | NINMNTIYYLRISI |
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsN22_06G015401 | OsN22_06G015401_03 | Chr06 | 15738489 | 15738941 | + | IsoSeq | ||
| CDS seq | ATGGATGTAAAGCCAAGCAAATTGCTTCCGCGCCAAGAACCGAAGATTGTGTGGGTTGTAAGAGATGCGAATCCGCCTGCCCAACAGATT |
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| Protein seq | MDVKPSKLLPRQEPKIVWVVRDANPPAQQI |
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsN22_06G015401 | OsN22_06G015401_04 | Chr06 | 15738626 | 15740605 | + | IsoSeq | ||
| CDS seq | ATGGGCTTATACGGTTCCAACGAACCAAGATTAGATTTGGAAAGATTAATTAATCAATCATACCCTGCAACATTGGAAATACTCTTTTATTTTGGCTTCCTTATTGCTTATGCTGTCAAATTGCCGATTATACCCCTACATACGTGGTTACCAGATACCCATGGGGAAGCGCATTACAGTACATGTATGCTTTTAGCGGGAATCCTATTAAAGATGGGAGCATACGGATTGATTCGGATCAATATGGAATTGTTACCTCATGCTCATTATCTATTTTCCCCTTGGTTAGTAATAATAGGAGCGATGCAAATAATCTATGCAGCTTCAACTTCTCTTGGCCAACGCAATTTCAAAAAAAGAATAGCCTACTCCTCCGTCTCTCACATGGGTTTCATTATTATAGGAATTGGTTCCATAACCAACATTGGACTCAATGGAGCTATTTTACAAATATTATCCCATGGATTTATTGGGGCTACACTTTTTTTCTTAGCGGGAACGGCTTGTGATAGAATGCGCCTTGTTTATCTCGAAGAACTGGGAGGGGTTTCTATCCCAATGCCAAAAATTTTTACCATGTTTAGTAGCTTTTCAATGGCTTCTCTTGCCTTACCAGGAATGAGTGGTTTTGTTGCGGAATTAGTAGTATTTTTTGGACTAATTACTAGTCCAAAATTTCTGTTAATGCCAAAAATGCTAATTACTTTTGTAATGGCAATTGGAATGATATTAACTCCTATTTATTTATTATCTATGTTACGACAGATGTTCTATGGATACAAGCTATTTCATGTTCCAAACGAAAATTTTGAGGATTCCGGCCCGCGAGAACTCTTTCTTTTAATCTGTATCTTTTTACCAGTAATAGGAATCGGTATTTATCCAGATTTTGTTCTCTCGCTATCCGTTGACAGGGTAGAGGCTCTGTTATCCAATTATTATCCT
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| Protein seq | MGLYGSNEPRLDLERLINQSYPATLEILFYFGFLIAYAVKLPIIPLHTWLPDTHGEAHYSTCMLLAGILLKMGAYGLIRINMELLPHAHYLFSPWLVIIGAMQIIYAASTSLGQRNFKKRIAYSSVSHMGFIIIGIGSITNIGLNGAILQILSHGFIGATLFFLAGTACDRMRLVYLEELGGVSIPMPKIFTMFSSFSMASLALPGMSGFVAELVVFFGLITSPKFLLMPKMLITFVMAIGMILTPIYLLSMLRQMFYGYKLFHVPNENFEDSGPRELFLLICIFLPVIGIGIYPDFVLSLSVDRVEALLSNYYP
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 322.471252 | 5.319046 | 260.323944 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_06g067809A | RBH | 57.876099 | 62.991142 | 36.943836 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os07g22504 | RBH | 13.353510 | 12.003896 | 2.992013 |
| Nipponbare | IRGSP 1.0 | RAP-db | NA | NA | NA | NA | NA |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_06g0026300 | RBH | 154.927185 | 28.674225 | 193.346512 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_06g0013330 | SBH | 12.198366 | 225.319534 | 203.214340 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_10g0003500 | SBH | 195.624878 | 16.329288 | 141.823486 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_06g0013440 | SBH | 4.102288 | 22.711769 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_06g0013560 | SBH | 238.542587 | 1136.331543 | 1228.099121 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_06G0202400 | SBH | 76.3888435 | 243.1794815 | 154.4309845 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_06g0013050 | SBH | 9.484497 | 52.102219 | 102.370003 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_06G0198300 | SBH | 0 | 0 | 0 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_06g0013580 | SBH | 5.795843 | 8.420445 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_06g0013520 | SBH | 13.709603 | 410.367340 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_06g0010470 | SBH | 0.0 | 57.248375 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_Ung0021420 | RBH | 192.702103 | 0.0 | 63.500420 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_06g0013360 | SBH | 2.768416 | 111.485985 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_10G003670 | RBH | 22.067636 | 0.000000 | 23.382788 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_06g0026150 | RBH | 23.088531 | 14.868025 | 28.227486 |
