Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsPr106_06g0013560 | OGI:06035010 | 16/16 | PR 106 | Os127742RS1 | Gramene(+IsoSeq) | Chr06:12167219-12172697 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | cagatggattctttagaaagattcccggataaagttcagtaaaatatttagttagaatctaactaaaggtgcatatgtgggcgggcagggggccccactacttgttcattcaggggggctagcctcatgacttCccactgggcgaggggtgcgcctaacccacctactcactcatcaattacggtgttcagctgacttgcatagaaagaCccctattgtttagtaatttggcgccccatcttttttttgattgactgttgtcaactaatcttttcaatgttcgattctactctatgttagaacatttctgtgaatgctatttcgatctaagtggtcctattctctgtcccgtgctaggaagcattactcttcttttcattccaaattcttctataagactgatacgattgattggtctgtgcatttctcttattacttttttgtatccccttgttcctcggatacaattcgatccctctatggccaaatctcaatttgtggaaagccttcaatggcttccttatgaaaacatccatttgtatatgggtatagacggtctttcattattcttagtgatattgaccacatttctgatccctaattgcatttcagtgggttggtctagtatgagaagttttaggaaagagtatattacagcatttctaattcgtgaatttctaatgatcgtcgtgtcctacatgttggatcctctactattctatgttctttccgaaagtgtgccaatccctatgttgtgcggagctgagcatcttctattcactgggatcaagcttttcctctgcaggggccttttgcagtaaaccccctacaggcggtcccctgtcgtcgtaaagtagtaaaggtccccgcgaagctttcgggaagaggggtagtcttgtgtgtaagcatagcatttctagtcgaaccaccaaaccacacatctttttttggtgggagggtactccgagtagtgggtacctcgtaggacctcgacccgcctactcaggtcttgtatggatatgcaggaaggggtgctcctaggtgtgtgtagggggtgtgtttgttcacgagaaaggattcctcgtcaagtcaggggggggggGTGTGGACACACTTGCGCGAATTCGGGTAACGGCTACAAGGGATAAAAATAAAGGAAACTGTACCTGACCAGGGATGGACGTAAACTCGTAAGCTACCAAGGGTAGGGATAATCATCTAGGTCTTATTGTTTAAAAAAAAGCCGCCCCGCCACAGCAGGCAGGTTAGTTCCTCTGTCATTGCCAGAGAGTTCTTGGCGAAGAGACCTTAGGATAAGTTGCTAAAACAAACGGGGGAGGgggggggatcgacccgttcagtagaattccgaagaaagactgttggcagcaggtggagacatttctttggcccccttccaaataaatgcgggcagggtagagctcggcggagggttcgagaatagggtagggtcctgtcctaataaagaaaatcaagataaataaaggggcgggtccctttatgcatgcatctttgtacaagtggaggccggaaagatcaaaccaatagaaccgctcacatcacagtagtcgtagttgcgtaaaggccgtcagtcagggggcgaccataacataaggcaatgactttcacagatctctctatcgttagatataacgaacgggcgggtttgaaaggtagggtttttgacggccctaccactagtcctgctagccttctttcaggcaggaagcagaccgggcccgacgggcgggcatctcccgctatgcaagcagcatggttcgccaccactcgagaagcaaaagattcgagagtcaaggcggaaaagacaagcatagtggtctaatgacaagggccgacgacggaagtctcatgtacagttccctgagaagggagtggctacccactggagcttcgaccaaccaccaccggtcaattccgctttggggccacccttgactctaccatcattataggggtatggggttcgagacaaagaaagatcaaggcagcatatcagtttttcctatatactttactgggatccgtttttatgctattagctattctgttgattcttctccaaacaggaaccaccgatttacaaattttattaaccacagaatttagtgagcggcgccaaatccttctatggatttctttttttgcctcttttgccgtcaaagtgcctatggtaccagttcatatttggttacccgaatcccatgtagaggcacctacggctggatccgtcatcttggcaggaattcttttaaaattgggaacctacgggtttttaagattttcaatacccatgtttcccgaagcgacactttgtttcactcctttcatttatactctaagcgcgattgctataatatatacttccttgaccactttaagacagattgatcttaagaagatcattgcctactcctcagtagcccatatgaatttggtgactattggtatgtttagtcgggcagcggccgttaggtcacctattttgagttatggacacacaagcaaggccaaaacatgtgtgccgggcgtgcgacccatcaacctactagcaataggggggaaaacttagcatgtcgcaacaaaagcatcgattcgaggcgtcagcaaaacaccgccatctgttcctaaaacaaaaccccttagcgccccggggcaggagtgggggacggccctatgcagacagcaacagcaccggctctacgatgtccgaattgaatcttttggttcccttgaataagaattgttgggcgcggcgaagcgagcgcttctagctgtttcgcttgcttctttcttattgtggcggctattatagcgtggctgaaatgaccgaaaagcgagatgaacctttcaaatcgattgatatagatggcctgatctgttctggtagatcgaaagggtatctatcaataataagggttgacctctttctatctattgatgatacaagatatctatctattctggatccatcagaaagaaatcgatatgtatctgatggagtctacatcgtatgtagagcacccaagcgcttttttggccagttcaattctattatccatcggtccaatgcactggcgcatctcatgggggggggggaaagcaaatgtagttagttgtcttgttgttgttcgccgcctcgacacattccccggcatcgtccgacacaaaaagaaagagcgtggagccccagcccgacctgtaagtccgctaacgtaaagtgaggagttgagcctgaactggcgaaccgaagtcactttcgtaaccatacttcctacagctaacacgtgttcggtccagcgggaacgcgcagcacaaacgaacgtgagctgctttaccgaatatcccccgctggccatcggggacctagtggtaaggccatgatctgcagcgcaggggaagggatcactcattcttctattggggacaggtgcacgaacgacaactccaaatgtcagacatccgtcacctatacctaccgtttaggtggcaccagcgagatccagctaaggtaaggaacttcgtgtcgcggctgctccactccgctgcagtcttttgaacagaacttcgttgccttcccgcgcgcgaaacgaatgggcgcagtgtcgtgggtcagttttggggcggggggcagagagagaccagaagaatgattcatttggatcaacgagccatttcgcgattcagtagaatgtctctctatccatatctattctatctttatatgacgtgccatAaaaaaaagaagtatttttttatggcatgtgagatgatcgcgcctagtagccacatatcagctgcgctcaatttgcgggatttccgttggatctgatctttcgctttgacgaattcggacctagcgaatggaccgtagaacggaaagcgccttctaaacaactcggtagaagggaaggggcctatgtatttgcatgacccctgcggatttgaccctacctacacccggagccaatcccctagcggtcctgccaccacaccacagaacaggagctcgtgtggaaccttggatttctggcgtaacagcggtggaagttataaaaatattacggccacataacataggggcctacgctaaggtcggccaaaatatggacacccgaagggcccggcacgcacaatcctatcctatccgagcccgtcattgcatgcacttcggacagccgtccgtagcatcataaagagcacctccctttcgaggtacccaaatggaacgggctttatttgtgttgttggttggtctttctcaacgtggtctatagcacgaaaaaccattctttacaagatagggccgttcacatgaaagataagaaaaaaatccattcttcatggttgggcgcatttctccaaatcctccaggatcacaagtggaacgctaagcaagggtggggaggctgcgagctccacgtcgaacagaaagaagcaagcagggggtgttgccatagcgtgtcggggagcaagcgtaggcaaccaaactaaataaggctaaaaaaaaagtagctagcgtttttaagctggctgccttttctagcgcgcgtactcttctgtggagtcgcacggaacgagccttgtcttccctccaacgactagctcccttttcttgttccggtcacccttctcttgctgtggaaggacttttgcctgtggtgtggtccaacctgtgggcggagtcgccctcatccccccattgctcagtgctccctgcagcttcgctgggctttacccgcgtagacgcgggcttctataagagaatgaaaagctctctctttacaataaaatgcgaaccgcgcggagcccacccttttttgttttctgccgccactgggtggccgctggggaaacacagcccggccgcctgtcgggaaaggggggtgggggatgggcctacctattctgagggagcatgttgagaggttccatatgccgagccaaagggcagaacttcagtgcgtgatcatagtatgtcacctcgtctcgtcctcgcagcatcgaagagtacttatgcactatgttccgattcactgataaggaagatagagttggggtggaggtctacaatgtgatactatagtatagtatgccccggggggaaagatgcgcaactcaaaacggaagcaggaagcgtgttgtaaaaaatgtcggaggttaccagatctctgagactaccatcgatccgatagagcggatcgaccagaaaagaagtggagttagaaagccgtatgataggtggtaactatcttgtacggttcggagggtaagcggcgtactctGggggaatagtaggctctatcgaacatacagggaattgggggtagcattttacttatgttaagtcatggactggtttcttcagccctttttctatgtgttggtgttctatatgaccgacataagactcgacttgttagatattatggaggtttag
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| CDS seq | atggccaaatctcaatttgtggaaagccttcaatggcttccttatgaaaacatccatttgtatatgggtatagacggtctttcattattcttagtgatattgaccacatttctgatccctaattgcatttcagtgggttggtctagtatgagaagttttaggaaagagtatattacagcatttctaattcgtgaatttctaatgatcgtcgtgtcctacatgttggatcctctactattctatgttctttccgaaagaaccaccgatttacaaattttattaaccacagaatttagtgagcggcgccaaatccttctatggatttctttttttgcctcttttgccgtcaaagtgcctatggtaccagttcatatttggttacccgaatcccatgtagaggcacctacggctggatccgtcatcttggcaggaattcttttaaaattgggaacctacgggtttttaagattttcaatacccatgtttcccgaagcgacactttgtttcactcctttcatttatactctaagcgcgattgctataatatatacttccttgaccactttaagacagattgatcttaagaagatcattgcctactcctcagtagcccatatgaatttgccctttttctatgtgttggtgttctatatgaccgacataagactcgacttgttagatattatggaggtttag
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| Protein seq | MAKSQFVESLQWLPYENIHLYMGIDGLSLFLVILTTFLIPNCISVGWSSMRSFRKEYITAFLIREFLMIVVSYMLDPLLFYVLSERTTDLQILLTTEFSERRQILLWISFFASFAVKVPMVPVHIWLPESHVEAPTAGSVILAGILLKLGTYGFLRFSIPMFPEATLCFTPFIYTLSAIAIIYTSLTTLRQIDLKKIIAYSSVAHMNLPFFYVLVFYMTDIRLDLLDIMEV |
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| Function | NADH-ubiquinone oxidoreductase chain 4 [UniProtKB/Swiss-Prot:P27572] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsPr106_06g0013560 | OsPr106_06g0013560.01 | Chr06 | 12167698 | 12172697 | + | NAM | ||
| CDS seq | atggccaaatctcaatttgtggaaagccttcaatggcttccttatgaaaacatccatttgtatatgggtatagacggtctttcattattcttagtgatattgaccacatttctgatccctaattgcatttcagtgggttggtctagtatgagaagttttaggaaagagtatattacagcatttctaattcgtgaatttctaatgatcgtcgtgtcctacatgttggatcctctactattctatgttctttccgaaagaaccaccgatttacaaattttattaaccacagaatttagtgagcggcgccaaatccttctatggatttctttttttgcctcttttgccgtcaaagtgcctatggtaccagttcatatttggttacccgaatcccatgtagaggcacctacggctggatccgtcatcttggcaggaattcttttaaaattgggaacctacgggtttttaagattttcaatacccatgtttcccgaagcgacactttgtttcactcctttcatttatactctaagcgcgattgctataatatatacttccttgaccactttaagacagattgatcttaagaagatcattgcctactcctcagtagcccatatgaatttgccctttttctatgtgttggtgttctatatgaccgacataagactcgacttgttagatattatggaggtttag
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| Protein seq | MAKSQFVESLQWLPYENIHLYMGIDGLSLFLVILTTFLIPNCISVGWSSMRSFRKEYITAFLIREFLMIVVSYMLDPLLFYVLSERTTDLQILLTTEFSERRQILLWISFFASFAVKVPMVPVHIWLPESHVEAPTAGSVILAGILLKLGTYGFLRFSIPMFPEATLCFTPFIYTLSAIAIIYTSLTTLRQIDLKKIIAYSSVAHMNLPFFYVLVFYMTDIRLDLLDIMEV
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsPr106_06g0013560 | OsPr106_06g0013560.02 | Chr06 | 12167219 | 12168699 | + | IsoSeq | ||
| CDS seq | atgttagaacatttctgtgaatgctatttcgatctaagtggtcctattctctgtcccgtgctaggaagcattactcttcttttcattccaaattcttctataagactgatacgattgattggtctgtgcatttctcttattacttttttgtatccccttgttcctcggatacaattcgatccctctatggccaaatctcaatttgtggaaagccttcaatggcttccttatgaaaacatccatttgtatatgggtatagacggtctttcattattcttagtgatattgaccacatttctgatccctaattgcatttcagtgggttggtctagtatgagaagttttaggaaagagtatattacagcatttctaattcgtgaatttctaatgatcgtcgtgtcctacatgttggatcctctactattctatgttctttccgaaagtgtgccaatccctatgttgtgcggagctgagcatcttctattcactgggatcaagcttttcctctgcaggggccttttg
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| Protein seq | MLEHFCECYFDLSGPILCPVLGSITLLFIPNSSIRLIRLIGLCISLITFLYPLVPRIQFDPSMAKSQFVESLQWLPYENIHLYMGIDGLSLFLVILTTFLIPNCISVGWSSMRSFRKEYITAFLIREFLMIVVSYMLDPLLFYVLSESVPIPMLCGAEHLLFTGIKLFLCRGLL |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 238.542587 | 1136.331543 | 1228.099121 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os12g34094 | SBH | 16.400557 | 14.169786 | 62.134060 |
| Nipponbare | IRGSP 1.0 | RAP-db | NA | NA | NA | NA | NA |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_06g0013480 | RBH | 12.271266 | 370.910858 | 266.595917 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_06g0013330 | RBH | 12.198366 | 225.319534 | 203.214340 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_06g0013420 | RBH | 2.824208 | 0.000000 | 29.306599 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_06g0013440 | RBH | 4.102288 | 22.711769 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_06G0202400 | RBH | 76.3888435 | 243.1794815 | 154.4309845 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_06g0013050 | RBH | 9.484497 | 52.102219 | 102.370003 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_06G0198300 | RBH | 0 | 0 | 0 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_06g0013580 | RBH | 5.795843 | 8.420445 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_06g0013520 | RBH | 13.709603 | 410.367340 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_06g0013230 | RBH | 60.965397 | 530.616333 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_06g0013830 | RBH | 27.477453 | 60.192169 | 98.104507 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_06g0013360 | RBH | 2.768416 | 111.485985 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_06G013230 | RBH | 17.171061 | 284.029633 | 203.876663 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_06g0013530 | RBH | 31.368725 | 579.725098 | 442.368317 |
