Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsMH63_06G0202400 | OGI:06035010 | 16/16 | Minghui 63 | MH63RS3 | HZAU | Chr06:12110668-12112896 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | ATGGGGTTCGAGACAAAGAAAGATCAAGGCAGCATATCAGTTTTTCCTATATACTTTACTGGGATCCGTTTTTATGCTATTAGCTATTCTGTTGATTCTTCTCCAAACAGGAACCACCGATTTACAAATTTTATTAACCACAGAATTTAGTGAGCGGCGCCAAATCCTTCTATGGATTTCTTTTTTTGCCTCTTTTGCCGTCAAAGTGCCTATGGTACCAGTTCATATTTGGTTACCCGAATCCCATGTAGAGGCACCTACGGCTGGATCCGTCATCTTGGCAGGAATTCTTTTAAAATTGGGAACCTACGGGTTTTTAAGATTTTCAATACCCATGTTTCCCGAAGCGACACTTTGTTTCACTCCTTTCATTTATACTCTAAGCGCGATTGCTATAATATATACTTCCTTGACCACTTTAAGACAGATCGATCTTAAGAAGATCATTGCCTACTCCTCAGTAGCCCATATGAATTTGGTGACTATTGGTATGTTTAGTCGGGCAGCGGCCGTTAGGTCACCTATTTTGAGTTATGGACACACAAGCAAGGCCAAAACATGTGTGCCGGGCGTGCGACCCATCAACCTACTAGCAATAGGGGGGAAAACTTAGCATGTCGCAACAAAAGCATCGATTCGAGGCGTCAGCAAAACACCGCCATCTGTTCCTAAAACAAAACCCCTTAGCGCCCCGGGGCAGGAGTGGGGGACGGCCCTATGCAGACAGCAACAGCACCGGCTCTACGATGTCCGAATTGAATCTTTTGGTTCCCTTGAATAAGAATTGTTGGGCGCGGCGAAGCGAGCGCTTCTAGCTGTTTCGCTTGCTTCTTTCTTATTGTGGCGGCTATTATAGCGTGGCTGAAATGACCGAAAAGCGAGATGAACCTTTCAAATCGATTGATATAGATGGCCTGATCTGTTCTGGTAGATCGAAAGGGTATCTATCAATAATAAGGGTTGACCTCTTTCTATCTATTGATGATACAAGATATCTATCTATTCTGGATCCATCAGAAAGAAATCGATATGTATCTGATGGAGTCTACATCGTATGTAGAGCACCCAAGCGCTTTTTTGGCCAGTTCAATTCTATTATCCATCGGTCCAATGCACTGGCGCATCTCATGGGGGGGGGGGAAAGCAAATGTAGTTAGTTGTCTTGTTGTTGTTCGCCGCCTCGACACATTCCCCGGCATCGTCCGACACAAAAAGAAAGAGCGTGGAGCCCCAGCCCGACCTGTAAGTCCGCTAACGTAAAGTGAGGAGTTGAGCCTGAACTGGCGAACCGAAGTCACTTTCGTAACCATACTTCCTACAGCTAACACGTGTTCGGTCCAGCGGGAACGCGCAGCACAAACGAACGTGAGCTGCTTTACCGAATATCCCCCGCTGGCCATCGGGGACCTAGTGGTAAGGCCATGATCTGCAGCGCAGGGGAAGGGATCACTCATTCTTCTATTGGGGACAGGTGCACGAACGACAACTCCAAATGTCAGACATCCGTCACCTATACCTACCGTTTAGGTGGCACCAGCGAGATCCAGCTAAGGTAAGGAACTTCGTGTCGCGGCTGCTCCACTCCGCTGCAGTCTTTTGAACAGAACTTCGTTGCCTTCCCGCGCGCGAAACGAATGGGCGCAGTGTCGTGGGTCAGTTTTGGGGCGGGGGGCAGAGAGAGACCAGAAGAATGATTCATTTGGATCAACGAGCCATTTCGCGATTCAGTAGAATGTCTCTCTATCCATATCTATTCTATCTTTATATGACGTGCCATAAAAAAAAGAAGTATTTTTTTATGGCATGTGAGATGATCGCGCCTAGTAGCCACATATCAGCTGCGCTCAATTTGCGGGATTTCCGTTGGATCTGATCTTTCGCTTTGACGAATTCGGACCTAGCGAATGGACCGTAGAACGGAAAGCGCCTTCTAAACAACTCGGTAGAAGGGAAGGGGCCTATGTATTTGCATGACCCCTGCGGATTTGACCCTACCTACACCCGGAGCCAATCCCCTAGCGGTCCTGCCACCACACCACAGAACAGGAGCTCGTGTGGAACCTTGGATTTCTGGCGTAACAGCGGTGGAAGTTATAAAAATATTACGGCCACATAACATAGGGGCCTACGCTAAGGTCGGCCAAAATATGGACACCCGAAGGGCCCGGCACGCACAATCCTATCCTATCCGAGCCCGTCATTGCATGCACTTCGGACAGCCGTCCGTAG
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| CDS seq | ATGGGGTTCGAGACAAAGAAAGATCAAGGCAGCATATCAGTTTTTCCTATATACTTTACTGGGATCCGAACCACCGATTTACAAATTTTATTAACCACAGAATTTAGTGAGCGGCGCCAAATCCTTCTATGGATTTCTTTTTTTGCCTCTTTTGCCGTCAAAGTGCCTATGGTACCAGTTCATATTTGGTTACCCGAATCCCATGTAGAGGCACCTACGGCTGGATCCGTCATCTTGGCAGGAATTCTTTTAAAATTGGGAACCTACGGGTTTTTAAGATTTTCAATACCCATGTTTCCCGAAGCGACACTTTGTTTCACTCCTTTCATTTATACTCTAAGCGCGATTGCTATAATATATACTTCCTTGACCACTTTAAGACAGATCGATCTTAAGAAGATCATTGCCTACTCCTCAGTAGCCCATATGAATTTGGTGACTATTGGTATGTTTAGTCGGGCAGCGGCCGTTAGGTCACCTATTTTGAGTTATGGACACACAAGCAAGGCCAAAACATGTGTGCCGGGCGGGCCTACGCTAAGGTCGGCCAAAATATGGACACCCGAAGGGCCCGGCACGCACAATCCTATCCTATCCGAGCCCGTCATTGCATGCACTTCGGACAGCCGTCCGTAG
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| Protein seq | MGFETKKDQGSISVFPIYFTGIRTTDLQILLTTEFSERRQILLWISFFASFAVKVPMVPVHIWLPESHVEAPTAGSVILAGILLKLGTYGFLRFSIPMFPEATLCFTPFIYTLSAIAIIYTSLTTLRQIDLKKIIAYSSVAHMNLVTIGMFSRAAAVRSPILSYGHTSKAKTCVPGGPTLRSAKIWTPEGPGTHNPILSEPVIACTSDSRP |
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| Function | NADH-ubiquinone oxidoreductase chain 4 [UniProtKB/Swiss-Prot:P27572] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsMH63_06G0202400 | OsMH63_06T0202400-mRNA-1 | Chr06 | 12110668 | 12112896 | + | maker | ||
| CDS seq | ATGGGGTTCGAGACAAAGAAAGATCAAGGCAGCATATCAGTTTTTCCTATATACTTTACTGGGATCCGAACCACCGATTTACAAATTTTATTAACCACAGAATTTAGTGAGCGGCGCCAAATCCTTCTATGGATTTCTTTTTTTGCCTCTTTTGCCGTCAAAGTGCCTATGGTACCAGTTCATATTTGGTTACCCGAATCCCATGTAGAGGCACCTACGGCTGGATCCGTCATCTTGGCAGGAATTCTTTTAAAATTGGGAACCTACGGGTTTTTAAGATTTTCAATACCCATGTTTCCCGAAGCGACACTTTGTTTCACTCCTTTCATTTATACTCTAAGCGCGATTGCTATAATATATACTTCCTTGACCACTTTAAGACAGATCGATCTTAAGAAGATCATTGCCTACTCCTCAGTAGCCCATATGAATTTGGTGACTATTGGTATGTTTAGTCGGGCAGCGGCCGTTAGGTCACCTATTTTGAGTTATGGACACACAAGCAAGGCCAAAACATGTGTGCCGGGCGGGCCTACGCTAAGGTCGGCCAAAATATGGACACCCGAAGGGCCCGGCACGCACAATCCTATCCTATCCGAGCCCGTCATTGCATGCACTTCGGACAGCCGTCCGTAG
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| Protein seq | MGFETKKDQGSISVFPIYFTGIRTTDLQILLTTEFSERRQILLWISFFASFAVKVPMVPVHIWLPESHVEAPTAGSVILAGILLKLGTYGFLRFSIPMFPEATLCFTPFIYTLSAIAIIYTSLTTLRQIDLKKIIAYSSVAHMNLVTIGMFSRAAAVRSPILSYGHTSKAKTCVPGGPTLRSAKIWTPEGPGTHNPILSEPVIACTSDSRP
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 76.3888435 | 243.1794815 | 154.4309845 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | MSU | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | RAP-db | NA | NA | NA | NA | NA |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_06g0013480 | RBH | 12.271266 | 370.910858 | 266.595917 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_06g0013330 | RBH | 12.198366 | 225.319534 | 203.214340 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_06g0013420 | RBH | 2.824208 | 0.000000 | 29.306599 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_06g0013440 | RBH | 4.102288 | 22.711769 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_06g0013560 | RBH | 238.542587 | 1136.331543 | 1228.099121 |
| Minghui 63 | MH63RS3 | HZAU | NA | NA | NA | NA | NA |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_06g0013050 | RBH | 9.484497 | 52.102219 | 102.370003 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_06G0198300 | RBH | 0 | 0 | 0 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_06g0013580 | RBH | 5.795843 | 8.420445 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_06g0013521 | RBH | 3.760632 | 123.674789 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_06g0013230 | RBH | 60.965397 | 530.616333 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_06g0013832 | RBH | 5.410732 | 10.283010 | 26.506224 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_06g0013360 | RBH | 2.768416 | 111.485985 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_06G013230 | RBH | 17.171061 | 284.029633 | 203.876663 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_06g0013530 | RBH | 31.368725 | 579.725098 | 442.368317 |
