Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| LOC_Os12g34094 | OGI:06035010 | 16/16 | Nipponbare | IRGSP 1.0 | MSU | Chr12:20617980-20624090 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | ATGTTAGAACATTTCTGTGAATGCTATTTCGATCTAAGTGGTCCTATTCTCTGTCCCGTGCTAGGAAGCATTACTCTTCTTTTCATTCCAAATTCTTCAATAAGACTGATACGATTGATTGGTCTGTGCGTTTCTCTTATTACTTTTTTGTATCCCCTTGTTCCTCGGATACAATTCGATCCTTCTACGGCCAAATCTCAATTTGTGGAAAGCCTTCGATGGCTTCCTTATGAAAACATCCATTTGTATATGGGTATAGACGGTCTTTCATTATTCTTCGTGATATTGACCACATTTCTGATCCCTATTTGCATTTCAGTGGGTTGGTCTGGTATGAGAAGTTTTGGGAAAGAGTATATTACAGCATTTCTAATTCGTGAATTTCTAATGATCGCCGTGTCCTGCATGCTGGATCCTCTACTATTCTATGTTCTTTCCGAAAGCGTGCCAATCCCTATGTTGTGCGGAGCTGAGCATCTTCTATTCGCTGGGATCAAGCTTTTCCTCTGCAGGGGCCTTGTGCAGTAAACCCCCTACGGGCGGTCCCCCGTCGTCGTAAAGTAGTAAAGGTCCCCGCGAAGCTTTCGGGAAGAGGGGTAGTCTTGTGCGTAAGCATAGCATTTCTGGTCGAACCACCGAACCACACATCTTTTTTTGGTGGGAGGGTACTCCGAGTAGTGGGTACCTCGTAGGACCTCGACCCGCCTACTCAGGTCTTGTATGGATATGCAGGAAGGGGTGCTCCTAGGTGTGTGTAGGGGGTGTGTTTGTTCGCGAGAATGGATTCCTCGTCAAGTCAGGGGGGGGGTGTGGACACACTTGCGCGAATTCGGGTAATGGCTACAAGGGATAAAAATAAAGGAAACTGTACCCGACCAGGGATGGACGTAAACTCGTAAGCTACCGAGGGTAGGGATAATCGTCCAGGTCTTATTGTTTAAAAAAAAGCCGCCCCGCCACAGCAGGCAGGTTAGTTCCTCTGTCGTTGCCGGAGAGTTCTTGGCGAAGAGACCTTAGGATAAGTTGCTAAAACAAACGGGGGGGGGGGGGGGGAGGATCGACCCGTTCAGTAGAATTCCGAAGAAAGACTGTTGGCAGCAGGTGGAGACATTTCTTTGGCCCCCTTCCAAATAAATGCGGGCAGGGTAGAGCTCGGCGGAGGGTTCGAGAATAGGGTAGGGTCCTGTCCTAATAAAGAAAATAAAGATAAATAAAGGGGCGGGTCCCTTTATGCATGCATCTTCGTACAAGTGGAGGCCGGAAAGATCAAACCAATAGAACCGCTCACATCACAGTAGTCGTAGTTGCGTAAAGGCCGTCAGTCGGGGGGCGACCATAACATAAGGCAATGACTTTCACGGATCTCTCTATCGTTAGATATAACGAACGGGCGGGTTCGAAAGGTAGGGTTTTTGACGGCCCTACCACTAGTCCTGCTAGCCTTCTTTCGGGCAGGAAGCAGGCCGGGCCCGACGGGCGGGCATCTCCCGCTACGCAAGCAGCATGGTTCGCCACCACCCGAGAAGCAAAAGATTCGAGAGTCAAGGCGGAAAAGACAAGCATAGTGGTCTAATGACAAGGGCCGACGACGGAAGCTCGGGACGGAGCCGTATGATGCGGAAGTCTCACGTACGGTTCCCTGAGAAGGGAGTGGCTACCCACTGGAGCTTCGACCAACCACCACCGGTCAATTCCGCTTTGGGGCCACCCCTGACTCTACCATCATTATAGGGGTATGGGGTTCGAGACAAAGAAAGATCAAGGCAGCATATCAGTTTTTCCTATATACTTTACTGGGATCCGTTTTTATGCTATTAGCTATTCTGTTGATTCTTCTCCAAACAGGAACCACCGATTTACAAATTTTATTAACCACAGAATTTAGTGAGCGGCGCCAAATCCTTCTATGGATTGCTTTTTTCGCCTCTTTTGCCGTCAAAGTGCCTATGGTACCAGTTCATATTTGGTTACCCGAAGCCCATGTAGAGGCACCTACGGCTGGATCCGTCATCTTGGCAGGAATTCTTTTAAAATTGGGAACCTACGGGTTTTTAAGATTTTCAATACCCATGTTTCCCGAAGCGACACTTTGTTTCACTCCTTTCATTTATACTCTAAGCGCGATTGCTATAATATATACTTCCTTGACCACTTTAAGACAGATCGATCTTAAGAAGATCATTGCCTACTCCTCAGTAGCCCATATGAATTTGGTGACTATTGGTATGTTTAGTCGGGCGGCGGCCGTTAGGTCACCTATTTTGAGTTATGGACACACAAGCAAGGCCAAAACATGTGTGCCGGGCGTGCGACCCATCAACCTACTAGCAATAGGGGGGAAAACTTAGCATGTCGCAACAAAAGCGTCGATTCGAGGCGTCAGCAAAACACCGCCGTCTGTTCCTAAAACAAAACCCCTTAGCGCCCCGGGGCGGGAGTGGGGGACGGCCCTACGCAGACAGCAGCAGCACCGGCTCTACGAAGTCCGAATCGAATCTTTCGGTTCCCGTGAATAAGAATTGTTGGGCGCGGCGAAGCGAGCGCTTCTAGCTGTTTCGCTTGCTTCTTTCTTATTGTGGCGGCTATTATAGCGTGGCTGAAATGACCGAAAAGCGAGATGAACCTTTTAAATCGATTGATATAGATGGCCTGATCTGTTCTGATAGATCGAAAGGGAATCTATCAATAATAAGGGTTGACCTCTTTCTATCTATTGATGATACAAGATATCTATCTATTCTGGATCCATCAGAAAGAAATCGATATGTATCTGATGGAGTCTACATCGTATGTAGAGCGCCCAAGCGCTTTTTTGGCCAGCTCAGTTCTATTATCCATCGGTCCAATGCACTGGCGCATCTCATGGGGGGAAAAAGCAAATGTAGTTAGTTGTCTTGTTGTTGTTCGCCGCCTCGACACATTCCCCGGCATCGTCCCACACAGAAAGAAAGAGCGTGGAGCCCCGGCCCGACCTGTAAGTCCGCTAACGTAAAGCGAGGAGTTGAGCCTGAACTGGCGAACCGAAGTCACTTTCGTAACCATACTTCCTACAGCTAACACGTGTCCGGTCCAGCGGGAACGCGCAGCGCAAACGAACGTGAGCTGCTTTACCGAATATCCCCCGCTGGCCATCGGGGACCTAGTGGTAAGGCCATGATCCGCAGCGCAGGGGAAGGGATCACTCATTCTTCTATTGGGGACAGGTGCACGAACAACAACTCCAAACGTCAGACATCCGCCGCCTATACCTACCGTTTAGGTGGCACCAGCGAGATCCAGCTAAGGTAAGGAACTTCGTGTCGCGGCTGCTCCACTCCGCTGCGGTCTTTTGAACAGAACTTCGTTGCCTTCCCGCGCGCGAAACGAATGGGCGCAGTGTCGTGGGTCAGTTTTGGGGCGGGGGGCAGAGAGAGACCAGAAGAATGATTCATTTGGATCGACGAGCCATTTCGCGATTCAATAGAATGTCTCTCTATCCATATCTATTCTATCTTTATATGACGGGCCATAAAAAAAAGAAGTATTTTTTTATGGCATGTGAGATGATCGCGCCTAGTAGCCACATATCAGCTGCGCTCAATATGCGGGATTTCCGTTGGATCTGATCTTTCGCTTTGACGAATTTGGACCTAGCGAAAAGGACTCTAAGCCTTCGCGCAAACAAGCAAAGTAGAAGCAAGACGAGGAAGCGGAGCTGTCGTAGAAGCAGTAGCTTCCCCCGACAATATACAATACAACAGCCATGAATAAAAAAGCCCCTAGTTTAACGAGTTCGCTGCTTTTCCCAGGCCGGAGAAGGGCAACTACTTATTGATTGATCGCCTTTCTTTGATATGTGTTCAATTTAGTACAATACAAACTACAACTAGATCAAAGCGGAAGGGCCACTCACTATAGAAGCTATAACTAGCCTAGCCCTAGCCAATAGTATAGTTTAGTAGTCGGCCAAACCCCCATGCTCACGACATGTTCTTGATATTGATTGAGTTGGAGGGAGTCAGAGACTACCACGGAATCCTTCCATAGTCACCCCGGTGACCTTCGTCACCAAAGCGTCACGACAGTTTCCAAGACCCCTCACATAATCTCCTGTGGGGATCAGTCGGAGCACGTAGGAATGCCGACCACTACATAAGCCGCAGGCGGAGAAAGCTCGAAGAGCTTCCCTTCATTCGCTTCGCGGGAGTCGCACACAGCACATAGCTGGAAGTCAGAGGGCCCGTACTACCTGCCTAACCCTTCGCTCCGAGGGACCGTAGAACGGAAAGCGCCTTCTAAACAACTCGGCAGAAGGGAAGGGGCCTATGTATTTGCATGACCCCTGCGGATTTGACCCTACCTACACCCGGAGCCAATCCCCTAGCGGTCCTGCCACCACGCCGCAGAACAGGAGCTCGTGTGGAACCTTGGATTTCTGGCGTAACAGCGGTGGAAGTTATAAAAATATTACGGCCGCATAACATAGGGGCCTACGCTAAGGTCGGCCAAAATATGGACACCCGAAGGGCCCGGCGCGCACAATCCTATCCTATCCGAGCCCGTCATTGCATGCACTTCGGACAGTCGTCCGTAGCATCATAAAGAGCACCTCCCTTTCGAGGTACCCAAATGGAACGGGCTTTATTTGTGTTGTTGGTTGGTCTTTCTCAACGTGGTCTATAGCACGAAAAACCATTCTTTACAAGATAGGGCCGTTCACATGAAAGATAAGAAAAAATCCATTCTTCATGGTCGGGCGCATTTCTCCAAATCCTCCAGGATCACAAGTGGAACGCTAAGCAAGGGTGGGGAGGCTGCGAGCTCCGCGTCGAACAGAAAGAAGCAAGCAGGGGGTGTTGCCGTAGCGCGCCGGGGAGCAAGCGTAGGCAACCAAACTAAATAAGGCTAAAAAAAAAGTAGCTAGCGTTTTTAAGCTGGCTGCCTTTTCTAGCGCGCGTACTCTTCTGTGGAGTCGCACGGAACGAGCCTTGTCTTCCCTCCAACGACTAGCTCCCTTTTCTTGTTCCGGTCACCCTTCTCTTGCCGTGGAAGGACTTTTGCCTGTGGTGTGGTCCAACCCGTGGGCGGAGTCGCCCTCATCCCCCCATTGCTCAGTGCTCCCTGCAGCTTCGCTGGGCTTTACCCGCGTGGACGCGGGCTTCTATAAGAGAATGAAAAGCTCTCTCTTTACAATAAAACGCGAACCGCGCGGAGCCCACCCTTTTTCGTTTTCTGCCGCCACTGGGTGGCCGCTGGGGAAACACAGCCCGGCCGCCTCTCGGGAAAGGGGGGTGGGGGATGGGCCTACCTATCCCGAGGGAGCAGTTGAGAGGTTCCATATGCCGAGCCGAAGGGCAGAACTTCAGTGCGTGATCGTAGTATGTCACCTCGTCTCGTCCTCGCAGCATCGAAGAGTACCTATGCACTATGTTCCGGTTCACTGATAAGGAAGATAGAGTTGGGGTGGAGGTCTACGATGTGATACTATAGTATAGTATGCCCCGGGGGGAAAGATGCGCAACTCAAAACGGAAGCAGGAAGCGTGTTGTAAAAAATGTCGGAGGTTACCAGATCTCTGAGACTACCATCGATCCGACAGAGCGGAACGACCAGAAAAGAAGTGGAGTTAGAAAGCCGTATGATAGGTGGTAACTATCTTGTACGGTTCGGAGGGTAAGCGGCGTACTCTGGGGGAATATTAGGCTCTATCGAACATACAGGGAATTGGGGGTAGCATTTTACTTATGTTAAGTCATGGACTGGTTTCTTCAGCCCTTTTTCTATGTGTTGGTGTTCTATATGACCGACATAAGACTCGACTTGTTAGATATTATGGAGGTTTAGTGAGCACCATGCCGAATTTCTCTACCATTTTCTTCTTTTTCACTTTAGCCAATATGAGTTTACCCGGCACTAGCAGCTTTATTGGGGAATTTCTAATCTTAGTAGGAGCTTTCCAAAGAAATAGCTTAGTAGCCACATTAGCAGCGCTTGGGATGATTTTAGGCGCGGCGTATTCCCTTTGGCTATATAATCGTGTGGTTTCTGGAAATTTAAAACCCGATTTCCTCTATAAATTCTCCGATCTAAATGGCAGAGAAGTTTCCATATTTCTACCTTTTCTTGTTGGAG
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| CDS seq | ATGTTAGAACATTTCTGTGAATGCTATTTCGATCTAAGTGGTCCTATTCTCTGTCCCGTGCTAGGAAGCATTACTCTTCTTTTCATTCCAAATTCTTCAATAAGACTGATACGATTGATTGGTCTGTGCGTTTCTCTTATTACTTTTTTGTATCCCCTTGTTCCTCGGATACAATTCGATCCTTCTACGGCCAAATCTCAATTTGTGGAAAGCCTTCGATGGCTTCCTTATGAAAACATCCATTTGTATATGGGTATAGACGGTCTTTCATTATTCTTCGTGATATTGACCACATTTCTGATCCCTATTTGCATTTCAGTGGGTTGGTCTGGTATGAGAAGTTTTGGGAAAGAGTATATTACAGCATTTCTAATTCGTGAATTTCTAATGATCGCCGTGTCCTGCATGCTGGATCCTCTACTATTCTATGTTCTTTCCGAAAGCGTGCCAATCCCTATGTTAAAGATCAAGGCAGCATATCAGTTTTTCCTATATACTTTACTGGGATCCGTTTTTATGCTATTAGCTATTCTGTTGATTCTTCTCCAAACAGGAACCACCGATTTACAAATTTTATTAACCACAGAATTTAGTGAGCGGCGCCAAATCCTTCTATGGATTGCTTTTTTCGCCTCTTTTGCCGTCAAAGTGCCTATGGTACCAGTTCATATTTGGTTACCCGAAGCCCATGTAGAGGCACCTACGGCTGGATCCGTCATCTTGGCAGGAATTCTTTTAAAATTGGGAACCTACGGGTTTTTAAGATTTTCAATACCCATGTTTCCCGAAGCGACACTTTGTTTCACTCCTTTCATTTATACTCTAAGCGCGATTGCTATAATATATACTTCCTTGACCACTTTAAGACAGATCGATCTTAAGAAGATCATTGCCTACTCCTCAGTAGCCCATATGAATTTGGTGACTATTGGTATGTTTAGTCGGCGAACATACAGGGAATTGGGGGTAGCATTTTACTTATGTTAA
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| Protein seq | MLEHFCECYFDLSGPILCPVLGSITLLFIPNSSIRLIRLIGLCVSLITFLYPLVPRIQFDPSTAKSQFVESLRWLPYENIHLYMGIDGLSLFFVILTTFLIPICISVGWSGMRSFGKEYITAFLIREFLMIAVSCMLDPLLFYVLSESVPIPMLKIKAAYQFFLYTLLGSVFMLLAILLILLQTGTTDLQILLTTEFSERRQILLWIAFFASFAVKVPMVPVHIWLPEAHVEAPTAGSVILAGILLKLGTYGFLRFSIPMFPEATLCFTPFIYTLSAIAIIYTSLTTLRQIDLKKIIAYSSVAHMNLVTIGMFSRRTYRELGVAFYLC |
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| Function | NADH-ubiquinone oxidoreductase chain 4 [UniProtKB/Swiss-Prot:P27572] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| LOC_Os12g34094 | LOC_Os12g34094.1 | Chr12 | 20617980 | 20624090 | + | MSU_osa1r7 | ||
| CDS seq | ATGTTAGAACATTTCTGTGAATGCTATTTCGATCTAAGTGGTCCTATTCTCTGTCCCGTGCTAGGAAGCATTACTCTTCTTTTCATTCCAAATTCTTCAATAAGACTGATACGATTGATTGGTCTGTGCGTTTCTCTTATTACTTTTTTGTATCCCCTTGTTCCTCGGATACAATTCGATCCTTCTACGGCCAAATCTCAATTTGTGGAAAGCCTTCGATGGCTTCCTTATGAAAACATCCATTTGTATATGGGTATAGACGGTCTTTCATTATTCTTCGTGATATTGACCACATTTCTGATCCCTATTTGCATTTCAGTGGGTTGGTCTGGTATGAGAAGTTTTGGGAAAGAGTATATTACAGCATTTCTAATTCGTGAATTTCTAATGATCGCCGTGTCCTGCATGCTGGATCCTCTACTATTCTATGTTCTTTCCGAAAGCGTGCCAATCCCTATGTTAAAGATCAAGGCAGCATATCAGTTTTTCCTATATACTTTACTGGGATCCGTTTTTATGCTATTAGCTATTCTGTTGATTCTTCTCCAAACAGGAACCACCGATTTACAAATTTTATTAACCACAGAATTTAGTGAGCGGCGCCAAATCCTTCTATGGATTGCTTTTTTCGCCTCTTTTGCCGTCAAAGTGCCTATGGTACCAGTTCATATTTGGTTACCCGAAGCCCATGTAGAGGCACCTACGGCTGGATCCGTCATCTTGGCAGGAATTCTTTTAAAATTGGGAACCTACGGGTTTTTAAGATTTTCAATACCCATGTTTCCCGAAGCGACACTTTGTTTCACTCCTTTCATTTATACTCTAAGCGCGATTGCTATAATATATACTTCCTTGACCACTTTAAGACAGATCGATCTTAAGAAGATCATTGCCTACTCCTCAGTAGCCCATATGAATTTGGTGACTATTGGTATGTTTAGTCGGCGAACATACAGGGAATTGGGGGTAGCATTTTACTTATGTTAA
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| Protein seq | MLEHFCECYFDLSGPILCPVLGSITLLFIPNSSIRLIRLIGLCVSLITFLYPLVPRIQFDPSTAKSQFVESLRWLPYENIHLYMGIDGLSLFFVILTTFLIPICISVGWSGMRSFGKEYITAFLIREFLMIAVSCMLDPLLFYVLSESVPIPMLKIKAAYQFFLYTLLGSVFMLLAILLILLQTGTTDLQILLTTEFSERRQILLWIAFFASFAVKVPMVPVHIWLPEAHVEAPTAGSVILAGILLKLGTYGFLRFSIPMFPEATLCFTPFIYTLSAIAIIYTSLTTLRQIDLKKIIAYSSVAHMNLVTIGMFSRRTYRELGVAFYLC
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 16.400557 | 14.169786 | 62.134060 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | MSU | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | RAP-db | NA | NA | NA | NA | NA |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_11g0016910 | RBH | 12.769343 | 428.763550 | 244.466476 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_06g0013330 | RBH | 12.198366 | 225.319534 | 203.214340 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_12g0015780 | RBH | 12.160054 | 141.187469 | 175.472839 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_06g0013440 | RBH | 4.102288 | 22.711769 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_11g0016770 | RBH | 213.573547 | 1068.755737 | 1756.779175 |
| Minghui 63 | MH63RS3 | HZAU | NA | NA | NA | NA | NA |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_06g0013050 | RBH | 9.484497 | 52.102219 | 102.370003 |
| Zhenshan 97 | ZS97RS3 | HZAU | NA | NA | NA | NA | NA |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_06g0010590 | RBH | 5.576010 | 8.634974 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_06g0010460 | RBH | 18.591888 | 593.019165 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_06g0010470 | RBH | 0.0 | 57.248375 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_06g0013830 | RBH | 27.477453 | 60.192169 | 98.104507 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_06g0010360 | RBH | 6.599814 | 230.413635 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_06G013230 | RBH | 17.171061 | 284.029633 | 203.876663 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_06g0013530 | RBH | 31.368725 | 579.725098 | 442.368317 |
