Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsAzu_06g0026300 | OGI:06079200 | 9/16 | Azucena | AzucenaRS1 | Gramene(+IsoSeq) | Chr06:28367628-28370217 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | GTATTTCCACTATGGAATATAGAGCGGACTAGTAGAAGAAAAAAAATCCTATTTAGGATAATAATTGGATAACAGAGCCTCTACCCTGTCAACGGATAGCGAGAGAACAAAATCTGGATAAATACCGATTCCTATTACTGGTAAAAAGATACAGATTAAAAGAAAGAGTTCTCGCGGGCCGGAATCCTCAAAATTTTCGTTTGGAACATGAAATAGCTTGTATCCATAGAACATATGTCGTAACATAGATAATAAATAAATAGGAGTTAATATCATTCCAATTGCCATTACAAAAGTAATTAGCATTTTTGGCATTAACAGAAATTTTGGACTAGTAATTAGTCCAAAAAATACTACTAATTCCGCAACAAAACCACTCATTCCTGGTAAGGCAAGAGAAGCCATTGAAAAGCTACTAAACATGGTAAAAAATTTTGGCATTGGGATAGAAACCCCTCCCAGTTCTTCGAGATAAACAAGGCGCATTCTATCACAAGCCGTTCCCGCTAAGAAAAAAAGTGTAGCCCCAATAAATCCATGGGATAATATTTGTAAAATAGCTCCATTGAGTCCAATGTTGGTTATGGAACCAATTCCTATAATAATGAAACCCATGTGAGAGACGGAGGAGTAGGCTATTCTTTTTTTGAAATTGCGTTGGCCAAGAGAAGTTGAAGCTGCATAGATTATTTGCATCGCTCCTATTATTACTAACCAAGGGGAAAATAGATAATGAGCATGAGGTAACAATTCCATATTGATCCGAATCAATCCGTATGCTCCCATCTTTAATAGGATTCCCGCTAAAAGCATACATGTACTGTAATGCGCTTCCCCATGGGTATCTGGTAACCACGTATGTAGGGGTATAATCGGCAATTTGACAGCATAAGCAATAAGGAAGCCAAAATAAAATAGTATTTCCAATGTTGCAGGGTATGATTGATTAATTAATCTTTCCAAATCTAATCTTGGTTCGTTGGAACCGTATAAGCCCATACCTAGAACTCCGATTAAGAAAAAAATGGAACCACCTGCAGTATACAAAATAAACTTTGTAGCTGAATAGAGACGCCTCTTCCCCCCCCACATGGATAAAAGTAAGTAAACAGGAATTAATTCTAACTCCCACATGATAAAAAAAAGTAAAAGGTCTCGCGAAGAAAATAATCCTATTTGACCGCTATACATTGCTAGCATCAGGAAATAGAATAATCGGGAATTCCGGGTAACCGGCCAAGCTGCTAAAGTAGCTAAAGTAGTCATAAATCCTGTCAATAAAATAGATCCTAATGAAAGTCCATCGATTCCCAATCTCCAGTGGAAATTGAAGACATCTATCCATTTAGAATCCTCTTTTAATTGGATTAAGGGATCCTCCAATTGGAAATGATAACAGAATGCATAAGTCATTAGAAGGAATTCTAATAAACAAATAGACATAGTATACCACCTAACGATTTTGTTTCCCCTATGAGGTAAAAAGAAAATTAATGAACCCGCAAATATCGGCAAAACAACAAGTATTGTTAACCAAGGAAAAGAACTCATGATAAAGTGATAAAGACAAGATACGTTTTGACCAGAAAAGCCCGTGCTCGATTATTTTGAGCACAGGCTTCTTCGGTAAAGAGGAATCAGACGATTCAAGTGGAATTTTTTGTAACGTATCAATAAGATAGAGCCATGCTGCGGGTTGTCTCAGGTCCTAAATAAACGCGGACACTTAAAAAATCTGTTGGGCAGGCGGATTCGCATCTCTTACAACCCACACAATCTTCGGTTCTTGGCGCGGAAGCAATTTGCTTGGCTTTACATCCATCCCAAGGTATCATTTCTAATACATCTGTTGGACAAGCTCGTACACATTGAGTGCATCCTATACATGTATCATAAATTTTTACGGAATGTGACATTGGATCTATAAATTTTCCTTTTCAACATAAAAATTTTCGATCTGGTCAAAATGAAATTAGTACTATATCAATCAAATGTATTGTAGACACCAGACGAAGCAATGGTTTATCCAAACTTCAACAAATAATGCAATATATTTCTTAATCCGTTTGTGAGAAAGCATGAAAAGAGCCAAGAGACTTTAATTTTGGGCTTCAACAATCATAATTATACGAATTGTATATACGAATTCGAATTAGCCAATAAATTGGCTATCGTCTTTTCAATATAAATTATTGCAATATTCAAATTGCAATATCAATGAATTGCAAAAATTCAACTAAGTAAAAAAGAATACTATGGAATAACCTACTCAAAAAATAGATATTCTCAAATAATAAATAGTATTCATGTTAATATTTCATATTATTATTATATGTGTCCCTTTGTTTAGAAGATTCTATGTCTAATTATTCAAAAAATTAGATTGATTGATACGAGTTGATTTCCTATTACGATGGATGGAAGAAAGAATGGATAATCCAATAGCTGCTTCAGCAGCCGCAAGGGCTATAACAAAAATTGCGAAAATGTCTCCTTTTAATTGGCGGCTATCAAATAGATCAGAAAATGTTACGAGATTTAGATTAATTGAATTCAGTATAAGTTCAAGGCATATTAGAGCTCTAACCAT
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| CDS seq | ATGAGTTCTTTTCCTTGGTTAACAATACTTGTTGTTTTGCCGATATTTGCGGGTTCATTAATTTTCTTTTTACCTCATAGGGGAAACAAAATCGTTAGGTGGTATACTATGTCTATTTGTTTATTAGAATTCCTTCTAATGACTTATGCATTCTGTTATCATTTCCAATTGGAGGATCCCTTAATCCAATTAAAAGAGGATTCTAAATGGATAGATGTCTTCAATTTCCACTGGAGATTGGGAATCGATGGACTTTCATTAGGATCTATTTTATTGACAGGATTTATGACTACTTTAGCTACTTTAGCAGCTTGGCCGGTTACCCGGAATTCCCGATTATTCTATTTCCTGATGCTAGCAATGTATAGCGGTCAAATAGGATTATTTTCTTCGCGAGACCTTTTACTTTTTTTTATCATGTGGGAGTTAGAATTAATTCCTGTTTACTTACTTTTATCCATGTGGGGGGGGAAGAGGCGTCTCTATTCAGCTACAAAGTTTATTTTGTATACTGCAGGTGGTTCCATTTTTTTCTTAATCGGAGTTCTAGGTATGGGCTTATACGGTTCCAACGAACCAAGATTAGATTTGGAAAGATTAATTAATCAATCATACCCTGCAACATTGGAAATACTATTTTATTTTGGCTTCCTTATTGCTTATGCTGTCAAATTGCCGATTATACCCCTACATACGTGGTTACCAGATACCCATGGGGAAGCGCATTACAGTACATGTATGCTTTTAGCGGGAATCCTATTAAAGATGGGAGCATACGGATTGATTCGGATCAATATGGAATTGTTACCTCATGCTCATTATCTATTTTCCCCTTGGTTAGTAATAATAGGAGCGATGCAAATAATCTATGCAGCTTCAACTTCTCTTGGCCAACGCAATTTCAAAAAAAGAATAGCCTACTCCTCCGTCTCTCACATGGGTTTCATTATTATAGGAATTGGTTCCATAACCAACATTGGACTCAATGGAGCTATTTTACAAATATTATCCCATGGATTTATTGGGGCTACACTTTTTTTCTTAGCGGGAACGGCTTGTGATAGAATGCGCCTTGTTTATCTCGAAGAACTGGGAGGGGTTTCTATCCCAATGCCAAAATTTTTTACCATGTTTAGTAGCTTTTCAATGGCTTCTCTTGCCTTACCAGGAATGAGTGGTTTTGTTGCGGAATTAGTAGTATTTTTTGGACTAATTACTAGTCCAAAATTTCTGTTAATGCCAAAAATGCTAATTACTTTTGTAATGGCAATTGGAATGATATTAACTCCTATTTATTTATTATCTATGTTACGACATATGTTCTATGGATACAAGCTATTTCATGTTCCAAACGAAAATTTTGAGGATTCCGGCCCGCGAGAACTCTTTCTTTTAATCTGTATCTTTTTACCAGTAATAGGAATCGGTATTTATCCAGATTTTGTTCTCTCGCTATCCGTTGACAGGGTAGAGGCTCTGTTATCCAATTATTATCCT
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| Protein seq | MSSFPWLTILVVLPIFAGSLIFFLPHRGNKIVRWYTMSICLLEFLLMTYAFCYHFQLEDPLIQLKEDSKWIDVFNFHWRLGIDGLSLGSILLTGFMTTLATLAAWPVTRNSRLFYFLMLAMYSGQIGLFSSRDLLLFFIMWELELIPVYLLLSMWGGKRRLYSATKFILYTAGGSIFFLIGVLGMGLYGSNEPRLDLERLINQSYPATLEILFYFGFLIAYAVKLPIIPLHTWLPDTHGEAHYSTCMLLAGILLKMGAYGLIRINMELLPHAHYLFSPWLVIIGAMQIIYAASTSLGQRNFKKRIAYSSVSHMGFIIIGIGSITNIGLNGAILQILSHGFIGATLFFLAGTACDRMRLVYLEELGGVSIPMPKFFTMFSSFSMASLALPGMSGFVAELVVFFGLITSPKFLLMPKMLITFVMAIGMILTPIYLLSMLRHMFYGYKLFHVPNENFEDSGPRELFLLICIFLPVIGIGIYPDFVLSLSVDRVEALLSNYYP |
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| Function | NAD(P)H-quinone oxidoreductase chain 4, chloroplastic [UniProtKB/Swiss-Prot:P0C325] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsAzu_06g0026300 | OsAzu_06g0026300.01 | Chr06 | 28369298 | 28370217 | - | NAM | ||
| CDS seq | ATGGTTAGAGCTCTAATATGCCTTGAACTTATACTGAATTCAATTAATCTAAATCTCGTAACATTTTCTGATCTATTTGATAGCCGCCAATTAAAAGGAGACATTTTCGCAATTTTTGTTATAGCCCTTGCGGCTGCTGAAGCAGCTATTGGATTATCCATTCTTTCTTCCATCCATCGATGCACTCAATGTGTACGAGCTTGTCCAACAGATGTATTAGAAATGATACCTTGGGATGGATGTAAAGCCAAGCAAATTGCTTCCGCGCCAAGAACCGAAGATTGTGTGGGTTGTAAGAGATGCGAATCCGCCTGCCCAACAGATTTTTTAAGTGTCCGCGTTTATTTAGGACCTGAGACAACCCGCAGCATGGCTCTATCTTATTGA
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| Protein seq | MVRALICLELILNSINLNLVTFSDLFDSRQLKGDIFAIFVIALAAAEAAIGLSILSSIHRCTQCVRACPTDVLEMIPWDGCKAKQIASAPRTEDCVGCKRCESACPTDFLSVRVYLGPETTRSMALSY |
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsAzu_06g0026300 | OsAzu_06g0026300.02 | Chr06 | 28367628 | 28369742 | - | IsoSeq | ||
| CDS seq | ATGAGTTCTTTTCCTTGGTTAACAATACTTGTTGTTTTGCCGATATTTGCGGGTTCATTAATTTTCTTTTTACCTCATAGGGGAAACAAAATCGTTAGGTGGTATACTATGTCTATTTGTTTATTAGAATTCCTTCTAATGACTTATGCATTCTGTTATCATTTCCAATTGGAGGATCCCTTAATCCAATTAAAAGAGGATTCTAAATGGATAGATGTCTTCAATTTCCACTGGAGATTGGGAATCGATGGACTTTCATTAGGATCTATTTTATTGACAGGATTTATGACTACTTTAGCTACTTTAGCAGCTTGGCCGGTTACCCGGAATTCCCGATTATTCTATTTCCTGATGCTAGCAATGTATAGCGGTCAAATAGGATTATTTTCTTCGCGAGACCTTTTACTTTTTTTTATCATGTGGGAGTTAGAATTAATTCCTGTTTACTTACTTTTATCCATGTGGGGGGGGAAGAGGCGTCTCTATTCAGCTACAAAGTTTATTTTGTATACTGCAGGTGGTTCCATTTTTTTCTTAATCGGAGTTCTAGGTATGGGCTTATACGGTTCCAACGAACCAAGATTAGATTTGGAAAGATTAATTAATCAATCATACCCTGCAACATTGGAAATACTATTTTATTTTGGCTTCCTTATTGCTTATGCTGTCAAATTGCCGATTATACCCCTACATACGTGGTTACCAGATACCCATGGGGAAGCGCATTACAGTACATGTATGCTTTTAGCGGGAATCCTATTAAAGATGGGAGCATACGGATTGATTCGGATCAATATGGAATTGTTACCTCATGCTCATTATCTATTTTCCCCTTGGTTAGTAATAATAGGAGCGATGCAAATAATCTATGCAGCTTCAACTTCTCTTGGCCAACGCAATTTCAAAAAAAGAATAGCCTACTCCTCCGTCTCTCACATGGGTTTCATTATTATAGGAATTGGTTCCATAACCAACATTGGACTCAATGGAGCTATTTTACAAATATTATCCCATGGATTTATTGGGGCTACACTTTTTTTCTTAGCGGGAACGGCTTGTGATAGAATGCGCCTTGTTTATCTCGAAGAACTGGGAGGGGTTTCTATCCCAATGCCAAAATTTTTTACCATGTTTAGTAGCTTTTCAATGGCTTCTCTTGCCTTACCAGGAATGAGTGGTTTTGTTGCGGAATTAGTAGTATTTTTTGGACTAATTACTAGTCCAAAATTTCTGTTAATGCCAAAAATGCTAATTACTTTTGTAATGGCAATTGGAATGATATTAACTCCTATTTATTTATTATCTATGTTACGACATATGTTCTATGGATACAAGCTATTTCATGTTCCAAACGAAAATTTTGAGGATTCCGGCCCGCGAGAACTCTTTCTTTTAATCTGTATCTTTTTACCAGTAATAGGAATCGGTATTTATCCAGATTTTGTTCTCTCGCTATCCGTTGACAGGGTAGAGGCTCTGTTATCCAATTATTATCCT
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| Protein seq | MSSFPWLTILVVLPIFAGSLIFFLPHRGNKIVRWYTMSICLLEFLLMTYAFCYHFQLEDPLIQLKEDSKWIDVFNFHWRLGIDGLSLGSILLTGFMTTLATLAAWPVTRNSRLFYFLMLAMYSGQIGLFSSRDLLLFFIMWELELIPVYLLLSMWGGKRRLYSATKFILYTAGGSIFFLIGVLGMGLYGSNEPRLDLERLINQSYPATLEILFYFGFLIAYAVKLPIIPLHTWLPDTHGEAHYSTCMLLAGILLKMGAYGLIRINMELLPHAHYLFSPWLVIIGAMQIIYAASTSLGQRNFKKRIAYSSVSHMGFIIIGIGSITNIGLNGAILQILSHGFIGATLFFLAGTACDRMRLVYLEELGGVSIPMPKFFTMFSSFSMASLALPGMSGFVAELVVFFGLITSPKFLLMPKMLITFVMAIGMILTPIYLLSMLRHMFYGYKLFHVPNENFEDSGPRELFLLICIFLPVIGIGIYPDFVLSLSVDRVEALLSNYYP
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 154.927185 | 28.674225 | 193.346512 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_06g067809A | RBH | 57.876099 | 62.991142 | 36.943836 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os06g46435 | RBH | 48.658710 | 48.207439 | 11.176375 |
| Nipponbare | IRGSP 1.0 | RAP-db | NA | NA | NA | NA | NA |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_07g0011460 | RBH | 14.733678 | 3.737027 | 41.317753 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_06g0013330 | SBH | 12.198366 | 225.319534 | 203.214340 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_06g0013420 | SBH | 2.824208 | 0.000000 | 29.306599 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Minghui 63 | MH63RS3 | HZAU | NA | NA | NA | NA | NA |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_11g0009960 | RBH | 126.473465 | 2.146509 | 44.857071 |
| Zhenshan 97 | ZS97RS3 | HZAU | NA | NA | NA | NA | NA |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_03g0027731 | RBH | 2.345809 | 0.0 | 3.551861 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_06G015401 | RBH | 322.471252 | 5.319046 | 260.323944 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_06g0026150 | RBH | 23.088531 | 14.868025 | 28.227486 |
