Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsCMeo_07g0011360 | OGI:06079200 | 9/16 | CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | Chr07:12936458-12937759 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | ATGGATAGATGTCTTCAATTTCCACTGGAGATTGGGAATCGATGGACTTTCATTAGGATCTATTTTATTGACAGGATTTATGACTACTTTAGCTACTTTAGCAGCTTGGCCGGTTACCCGGAATTCCCGATTATTCTATTTCCTGATGCTAGCAATGTATAGCGGTCAAATAGGATTATTTTCTTCGCGAGACCTTTTACTTTTTTTTATCATGTGGGAGTTAGAATTAATTCCTGTTTACTTACTTTTATCCATGTGGGGGGGGGGGGGAAGAGGCGTCTCTATTCAGCTACAAAGTTTATTTTGTATACTGCAGGTGGTTCCATTTTTTTCTTAATCGGAGTTCTAGGTATGGGCTTATACGGTTCCAACGAACCAAGATTAGATTTGGAAAGATTAATTAATCAATCATACCCTGCAACATTGGAAATACTCTTTTATTTTGGCTTCTTTATTGCTTATGCTGTCAAATTGCCGATTATACCCCTACATACGTGGTTACCAGATACCCATGGGGAAGCGCATTACAGTACATGTATGCTTTTAGCGGGAATCCTATTAAAGATGGGAGCATACGGATTGATTCGGATCAATATGGAATTGTTACCTCATGCTCATTATCTATTTTCCCCTTGGTTAGTAATAATAGGAGCGATGCAAATAATCTATGCAGCTTCAACTTCTCTTGGCCAACGCAATTTCAAAAAAAGAATAGCCTACTCCTCCGTCTCTCACATGGGTTTCATTATTATAGGAATTGGTTCCATAACCAACATTGGACTCAATGGAGCTATTTTACAAATATTATCCCATGGATTTATTGGGGCTACACTTTTTTTCTTAGCGGGAACGGCTTGTGATAGAATGCGCCTTGTTTATCTCGAAGAACTGGGAGGGGTAACTATCCCAATGCCAAAAATTTTTACCATGTTTAGTAGCTTTTCAATGGCTTCTCTTGCCTTACCAGGAATGAGTGGTTTTGTTGCGGAATTAGTAGTATTTTTTGGACTAATTACTAGTCCAAAATTTCTGTTAATGCCAAAAATGCTAATTACTTTTGTAATGGCAATTGGAATGATATTAACTCCTATTTATTTATTATCTATGTTACGACAGATGTTCTATGGATACAAGCTATTTCATGTTCCAAACGAAAATTTTGAGGATTCCGGCCCGCGAGAACTCTTTCTTTTAATCTGTATCTTTTTACCAGTAATAGGAATCGGTATTTATCCAGATTTTGTTCTCTCGCTATCCGTTGACAGGGTAGAGGCTCTGTTATCCAATTATTATCCTAAATAG
More
|
||||||||||
| CDS seq | ATGGATAGATGTCTTCAATTTCCACTGGAGATTGGGAATCGATGGACTTTCATTAGGATCTATTTTATTGACAGGATTTATGACTACTTTAGCTACTTTAGCAGCTTGGCCGGTGGTTCCATTTTTTTCTTAATCGGAGTTCTAGGTATGGGCTTATACGGTTCCAACGAACCAAGATTAGATTTGGAAAGATTAATTAATCAATCATACCCTGCAACATTGGAAATACTCTTTTATTTTGGCTTCTTTATTGCTTATGCTGTCAAATTGCCGATTATACCCCTACATACGTGGTTACCAGATACCCATGGGGAAGCGCATTACAGTACATGTATGCTTTTAGCGGGAATCCTATTAAAGATGGGAGCATACGGATTGATTCGGATCAATATGGAATTGTTACCTCATGCTCATTATCTATTTTCCCCTTGGTTAGTAATAATAGGAGCGATGCAAATAATCTATGCAGCTTCAACTTCTCTTGGCCAACGCAATTTCAAAAAAAGAATAGCCTACTCCTCCGTCTCTCACATGGGTTTCATTATTATAGGAATTGGTTCCATAACCAACATTGGACTCAATGGAGCTATTTTACAAATATTATCCCATGGATTTATTGGGGCTACACTTTTTTTCTTAGCGGGAACGGCTTGTGATAGAATGCGCCTTGTTTATCTCGAAGAACTGGGAGGGATGTTCTATGGATACAAGCTATTTCATGTTCCAAACGAAAATTTTGAGGATTCCGGCCCGCGAGAACTCTTTCTTTTAATCTGTATCTTTTTACCAGTAATAGGAATCGGTATTTATCCAGATTTTGTTCTCTCGCTATCCGTTGACAGGGTAGAGGCTCTGTTATCCAATTATTATCCTAAATAG
More
|
||||||||||
| Protein seq | MDRCLQFPLEIGNRWTFIRIYFIDRIYDYFSYFSSLAGGSIFFLIGVLGMGLYGSNEPRLDLERLINQSYPATLEILFYFGFFIAYAVKLPIIPLHTWLPDTHGEAHYSTCMLLAGILLKMGAYGLIRINMELLPHAHYLFSPWLVIIGAMQIIYAASTSLGQRNFKKRIAYSSVSHMGFIIIGIGSITNIGLNGAILQILSHGFIGATLFFLAGTACDRMRLVYLEELGGMFYGYKLFHVPNENFEDSGPRELFLLICIFLPVIGIGIYPDFVLSLSVDRVEALLSNYYPK |
||||||||||
| Function | NAD(P)H-quinone oxidoreductase chain 4, chloroplastic [UniProtKB/Swiss-Prot:P0C325] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsCMeo_07g0011360 | OsCMeo_07g0011360.01 | Chr07 | 12936458 | 12937759 | + | NAM | ||
| CDS seq | ATGGATAGATGTCTTCAATTTCCACTGGAGATTGGGAATCGATGGACTTTCATTAGGATCTATTTTATTGACAGGATTTATGACTACTTTAGCTACTTTAGCAGCTTGGCCGGTGGTTCCATTTTTTTCTTAATCGGAGTTCTAGGTATGGGCTTATACGGTTCCAACGAACCAAGATTAGATTTGGAAAGATTAATTAATCAATCATACCCTGCAACATTGGAAATACTCTTTTATTTTGGCTTCTTTATTGCTTATGCTGTCAAATTGCCGATTATACCCCTACATACGTGGTTACCAGATACCCATGGGGAAGCGCATTACAGTACATGTATGCTTTTAGCGGGAATCCTATTAAAGATGGGAGCATACGGATTGATTCGGATCAATATGGAATTGTTACCTCATGCTCATTATCTATTTTCCCCTTGGTTAGTAATAATAGGAGCGATGCAAATAATCTATGCAGCTTCAACTTCTCTTGGCCAACGCAATTTCAAAAAAAGAATAGCCTACTCCTCCGTCTCTCACATGGGTTTCATTATTATAGGAATTGGTTCCATAACCAACATTGGACTCAATGGAGCTATTTTACAAATATTATCCCATGGATTTATTGGGGCTACACTTTTTTTCTTAGCGGGAACGGCTTGTGATAGAATGCGCCTTGTTTATCTCGAAGAACTGGGAGGGATGTTCTATGGATACAAGCTATTTCATGTTCCAAACGAAAATTTTGAGGATTCCGGCCCGCGAGAACTCTTTCTTTTAATCTGTATCTTTTTACCAGTAATAGGAATCGGTATTTATCCAGATTTTGTTCTCTCGCTATCCGTTGACAGGGTAGAGGCTCTGTTATCCAATTATTATCCTAAATAG
More
|
|||||||
| Protein seq | MDRCLQFPLEIGNRWTFIRIYFIDRIYDYFSYFSSLAGGSIFFLIGVLGMGLYGSNEPRLDLERLINQSYPATLEILFYFGFFIAYAVKLPIIPLHTWLPDTHGEAHYSTCMLLAGILLKMGAYGLIRINMELLPHAHYLFSPWLVIIGAMQIIYAASTSLGQRNFKKRIAYSSVSHMGFIIIGIGSITNIGLNGAILQILSHGFIGATLFFLAGTACDRMRLVYLEELGGMFYGYKLFHVPNENFEDSGPRELFLLICIFLPVIGIGIYPDFVLSLSVDRVEALLSNYYPK
More
|
|||||||
| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 41.331852 | 7.853154 | 31.895985 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_06g067809A | SBH | 57.876099 | 62.991142 | 36.943836 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os07g22504 | RBH | 13.353510 | 12.003896 | 2.992013 |
| Nipponbare | IRGSP 1.0 | RAP-db | NA | NA | NA | NA | NA |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_07g0011460 | RBH | 14.733678 | 3.737027 | 41.317753 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_10g0007730 | SBH | 58.976830 | 9.181514 | 48.375618 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Minghui 63 | MH63RS3 | HZAU | NA | NA | NA | NA | NA |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_02g0024440 | SBH | 178.013016 | 3.041622 | 63.844807 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_10G0079200 | SBH | 897.621124 | 35.772089 | 44.932182 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_07g0015150 | RBH | 373.172974 | 1.660587 | 128.305374 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_11g0009960 | SBH | 76.446091 | 31.905334 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_10G003670 | SBH | 22.067636 | 0.000000 | 23.382788 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_04g0004730 | SBH | 249.024536 | 100.564789 | 261.998260 |
