Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsZS97_10G0079200 | OGI:06079200 | 9/16 | Zhenshan 97 | ZS97RS3 | HZAU | Chr10:4996521-4998309 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | CTATTTAGGATAATAATTGGATAACAGAGCCTCTACCCTGTCAACGGATAGCGAGAGAACAAAATCTGGATAAATACCGATTCCTATTACTGGTAAAAAGATACAGATTAAAAGAAAGAGTTCTCGCGGGCCGGAATCCTCAAAATTTTCGTTTGGAACATGAAATAGCTTGTATCCATAGAACATCTGTCGTAACATAGATAATAAATAAATAGGAGTTAATATCATTCCAATTGCCATTACAAAAGTAATTAGCATTTTTGGCATTAACAGAAATTTTGGACTAGTAATTAGTCCAAAAAATACTACTAATTCCGCAACAAAACCACTCATTCCTGGTAAGGCAAGAGAAGCCATTGAAAAGCTACTAAACATGGTAAAAATTTTTGGCATTGGGATAGAAACCCCTCCCAGTTCTTCGAGATAAACAAGGCGTATTCTATCACAAGCCGTTCCCGCTAAGAAAAAAAGTGTAGCCCCAATAAATCCATGGGATAATATTTGTAAAATAGCTCCATTGAGTCCAATGTTGGTTATGGAACCAATTCCTATAATAATGAAACCCATGTGAGAGACGGAGGAGTAGGCTATTCTTTTTTTGAAATTGCGTTGGCCAAGAGAAGTTGAAGCTGCATAGATTATTTGCATCGCTCCTATTATTACTAACCAAGGGGAAAATAGATAATGAGCATGAGGTAACAATTCCATATTGATCCGAATCAATCCGTATGCTCCCATCTTTAATAGGATTCCCGCTAAAAGCATACATGTACTGTAATGCGCTTCCCCATGGGTATCTGGTAACCACGTATGTAGGGGTATAATCGGCAATTTGACAGCATAAGCAATAAGGAAGCCAAAATAAAATAGTATTTCCAATGTTGCAGGGTATGATTGATTAATTAATCTTTCCAAATCTAATCTTGGTTCGTTGGAACCGTATAAGCCCATACCTAGAACTCCGATTAAGAAAAAAATGGAACCACCTGCAGTATACAAAATAAACTTTGTAGCTGAATAGAGACGCCTCTTCCCCCCCCCCACATGGATAAAAGTAAGTAAACAGGAATTAATTCTAACTCCCACATGATAAAAAAAAGTAAAAGGTCTCGCGAAGAAAATAATCCTATTTGACCGCTATACATTGCTAGCATCAGGAAATAGAATAATCGGGAATTCCGGGTAACCGGCCAAGCTGCTAAAGTAGCTAAAGTAGTCATAAATCCTGTCAATAAAATAGATCCTAATGAAAGTCCATCGATTCCCAATCTCCAGTGGAAATTGAAGACATCTATCCATTTAGAATCCTCTTTTAATTGGATTAAGGGATCCTCCAATTGGAAATGATAACAGAATGCATAAGTCATTAGAAGGAATTCTAATAAACAAATAGACATAGTATACCACCTAACGATTTTGTTTCCCCTATGAGGTAAAAAGAAAATTAATGAACCCGCAAATATCGGCAAAACAACAAGTATTGTTAACCAAGGAAAAGAACTCATGATAAAGTGATAAAGACAAGATACGTTTTGACCAGAAAAGCCCGTGCTCGATTATTTTGAGCACAGGCTTCTTCGGTAAAGAGGAATCAGACGATTCAAGTGGAATTTTTTGTAACGTATCAATAAGATAGAGCCATGCTGCGGGTTGTCTCAGGTCCTAAATAAACGCGGACACTTAAAAAATCTGTTGGGCAGGCGGATTCGCATCTCTTACAACCCACACAATCTTCGTTTCTTGGCGCGGAAGCAATTTGCTTGGCTTTACATCCATCCCAAGGTATCAT
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| CDS seq | ATGATACCTTGGGATGGATGTAAAGCCAAGCAAATTGCTTCCGCGCCAAGAAACGAAGATTGTGTGGGTTGTAAGAGATGCGAATCCGCCTGCCCAACAGATTTTTTAAGTGTCCGCGACCTGAGACAACCCGCAGCATGGCTCTATCTTATTGATACGTTACAAAAAATTCCACTTGAATCGTCTGATTCCTCTTTACCGAAGAAGCCTGTGCTCAAAATAATCGAGCACGGGCTTTTCTGGTCAAAACAATTCCTTCTAATGACTTATGCATTCTGTTATCATTTCCAATTGGAGGATCCCTTAATCCAATTAAAAGAGGATTCTAAATGGATAGATGTCTTCAATTTCCACTGGAGATTGGGAATCGATGGACTTTCATTAGGATCTATTTTATTGACAGGATTTATGACTACTTTAGCTACTTTAGCAGCTTGGCCGGTTACCCGGAATTCCCGATTATTCTATTTCCTGATGCTAGCAATGTATAGCGGTGGTTCCATTTTTTTCTTAATCGGAGTTCTAGGTATGGGCTTATACGGTTCCAACGAACCAAGATTAGATTTGGAAAGATTAATTAATCAATCATACCCTGCAACATTGGAAATACTATTTTATTTTGGCTTCCTTATTGCTTATGCTGTCAAATTGCCGATTATACCCCTACATACGTGGTTACCAGATACCCATGGGGAAGCGCATTACAGTACATGTATGCTTTTAGCGGGAATCCTATTAAAGATGGGAGCATACGGATTGATTCGGATCAATATGGAATTGTTACCTCATGCTCATTATCTATTTTCCCCTTGGTTAGTAATAATAGGAGCGATGCAAATAATCTATGCAGCTTCAACTTCTCTTGGCCAACGCAATTTCAAAAAAAGAATAGCCTACTCCTCCGTCTCTCACATGGGTTTCATTATTATAGGAATTGGTTCCATAACCAACATTGGACTCAATGGAGCTATTTTACAAATATTATCCCATGGATTTATTGGGGCTACACTTTTTTTCTTAGCGGGAACGGCTTGTGATAGAATACGCCTTGTTTATCTCGAAGAACTGGGAGGGGTTTCTATCCCAATGCCAAAAATTTTTACCATGTTTAGTAGCTTTTCAATGGCTTCTCTTGCCTTACCAGGAATGAGTGGTTTTGTTGCGGAATTAGTAGTATTTTTTGGACTAATTACTAGTCCAAAATTTCTGTTAATGCCAAAAATGCTAATTACTTTTGTAATGGCAATTGGAATGATATTAACTCCTATTTATTTATTATCTATGTTACGACAGATGTTCTATGGATACAAGCTATTTCATGTTCCAAACGAAAATTTTGAGGATTCCGGCCCGCGAGAACTCTTTCTTTTAATCTGTATCTTTTTACCAGTAATAGGAATCGGTATTTATCCAGATTTTGTTCTCTCGCTATCCGTTGACAGGGTAGAGGCTCTGTTATCCAATTATTATCCTAAATAG
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| Protein seq | MIPWDGCKAKQIASAPRNEDCVGCKRCESACPTDFLSVRDLRQPAAWLYLIDTLQKIPLESSDSSLPKKPVLKIIEHGLFWSKQFLLMTYAFCYHFQLEDPLIQLKEDSKWIDVFNFHWRLGIDGLSLGSILLTGFMTTLATLAAWPVTRNSRLFYFLMLAMYSGGSIFFLIGVLGMGLYGSNEPRLDLERLINQSYPATLEILFYFGFLIAYAVKLPIIPLHTWLPDTHGEAHYSTCMLLAGILLKMGAYGLIRINMELLPHAHYLFSPWLVIIGAMQIIYAASTSLGQRNFKKRIAYSSVSHMGFIIIGIGSITNIGLNGAILQILSHGFIGATLFFLAGTACDRIRLVYLEELGGVSIPMPKIFTMFSSFSMASLALPGMSGFVAELVVFFGLITSPKFLLMPKMLITFVMAIGMILTPIYLLSMLRQMFYGYKLFHVPNENFEDSGPRELFLLICIFLPVIGIGIYPDFVLSLSVDRVEALLSNYYPK |
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| Function | NAD(P)H-quinone oxidoreductase chain 4, chloroplastic [UniProtKB/Swiss-Prot:P0C325] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsZS97_10G0079200 | OsZS97_10T0079200-mRNA-1 | Chr10 | 4996521 | 4998309 | - | makerRMon | ||
| CDS seq | ATGATACCTTGGGATGGATGTAAAGCCAAGCAAATTGCTTCCGCGCCAAGAAACGAAGATTGTGTGGGTTGTAAGAGATGCGAATCCGCCTGCCCAACAGATTTTTTAAGTGTCCGCGACCTGAGACAACCCGCAGCATGGCTCTATCTTATTGATACGTTACAAAAAATTCCACTTGAATCGTCTGATTCCTCTTTACCGAAGAAGCCTGTGCTCAAAATAATCGAGCACGGGCTTTTCTGGTCAAAACAATTCCTTCTAATGACTTATGCATTCTGTTATCATTTCCAATTGGAGGATCCCTTAATCCAATTAAAAGAGGATTCTAAATGGATAGATGTCTTCAATTTCCACTGGAGATTGGGAATCGATGGACTTTCATTAGGATCTATTTTATTGACAGGATTTATGACTACTTTAGCTACTTTAGCAGCTTGGCCGGTTACCCGGAATTCCCGATTATTCTATTTCCTGATGCTAGCAATGTATAGCGGTGGTTCCATTTTTTTCTTAATCGGAGTTCTAGGTATGGGCTTATACGGTTCCAACGAACCAAGATTAGATTTGGAAAGATTAATTAATCAATCATACCCTGCAACATTGGAAATACTATTTTATTTTGGCTTCCTTATTGCTTATGCTGTCAAATTGCCGATTATACCCCTACATACGTGGTTACCAGATACCCATGGGGAAGCGCATTACAGTACATGTATGCTTTTAGCGGGAATCCTATTAAAGATGGGAGCATACGGATTGATTCGGATCAATATGGAATTGTTACCTCATGCTCATTATCTATTTTCCCCTTGGTTAGTAATAATAGGAGCGATGCAAATAATCTATGCAGCTTCAACTTCTCTTGGCCAACGCAATTTCAAAAAAAGAATAGCCTACTCCTCCGTCTCTCACATGGGTTTCATTATTATAGGAATTGGTTCCATAACCAACATTGGACTCAATGGAGCTATTTTACAAATATTATCCCATGGATTTATTGGGGCTACACTTTTTTTCTTAGCGGGAACGGCTTGTGATAGAATACGCCTTGTTTATCTCGAAGAACTGGGAGGGGTTTCTATCCCAATGCCAAAAATTTTTACCATGTTTAGTAGCTTTTCAATGGCTTCTCTTGCCTTACCAGGAATGAGTGGTTTTGTTGCGGAATTAGTAGTATTTTTTGGACTAATTACTAGTCCAAAATTTCTGTTAATGCCAAAAATGCTAATTACTTTTGTAATGGCAATTGGAATGATATTAACTCCTATTTATTTATTATCTATGTTACGACAGATGTTCTATGGATACAAGCTATTTCATGTTCCAAACGAAAATTTTGAGGATTCCGGCCCGCGAGAACTCTTTCTTTTAATCTGTATCTTTTTACCAGTAATAGGAATCGGTATTTATCCAGATTTTGTTCTCTCGCTATCCGTTGACAGGGTAGAGGCTCTGTTATCCAATTATTATCCTAAATAG
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| Protein seq | MIPWDGCKAKQIASAPRNEDCVGCKRCESACPTDFLSVRDLRQPAAWLYLIDTLQKIPLESSDSSLPKKPVLKIIEHGLFWSKQFLLMTYAFCYHFQLEDPLIQLKEDSKWIDVFNFHWRLGIDGLSLGSILLTGFMTTLATLAAWPVTRNSRLFYFLMLAMYSGGSIFFLIGVLGMGLYGSNEPRLDLERLINQSYPATLEILFYFGFLIAYAVKLPIIPLHTWLPDTHGEAHYSTCMLLAGILLKMGAYGLIRINMELLPHAHYLFSPWLVIIGAMQIIYAASTSLGQRNFKKRIAYSSVSHMGFIIIGIGSITNIGLNGAILQILSHGFIGATLFFLAGTACDRIRLVYLEELGGVSIPMPKIFTMFSSFSMASLALPGMSGFVAELVVFFGLITSPKFLLMPKMLITFVMAIGMILTPIYLLSMLRQMFYGYKLFHVPNENFEDSGPRELFLLICIFLPVIGIGIYPDFVLSLSVDRVEALLSNYYPK
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 897.621124 | 35.772089 | 44.932182 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_06g067809A | RBH | 57.876099 | 62.991142 | 36.943836 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os07g22504 | RBH | 13.353510 | 12.003896 | 2.992013 |
| Nipponbare | IRGSP 1.0 | RAP-db | NA | NA | NA | NA | NA |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_10g0003610 | RBH | 0.000000 | 0.000000 | 0.000000 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_10g0003500 | RBH | 195.624878 | 16.329288 | 141.823486 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_10g0003810 | RBH | 193.841736 | 1.761121 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_10g0003580 | RBH | 12091.941406 | 305.554291 | 4942.904297 |
| Minghui 63 | MH63RS3 | HZAU | NA | NA | NA | NA | NA |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_11g0009960 | RBH | 126.473465 | 2.146509 | 44.857071 |
| Zhenshan 97 | ZS97RS3 | HZAU | NA | NA | NA | NA | NA |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_03g0027731 | RBH | 2.345809 | 0.0 | 3.551861 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_10G003670 | RBH | 22.067636 | 0.000000 | 23.382788 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_04g0004730 | RBH | 249.024536 | 100.564789 | 261.998260 |
