Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsARC_10g0003810 | OGI:10036970 | 8/16 | ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | Chr10:4591205-4593146 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | GAAATTGCGTTGGCCAAGAGAAGTTGAAGCTGCATAGATTATTTGCATCGCTCCTATTATTACTAACCAAGGGGAAAATAGATAATGAGCATGAGGTAACAATTCCATATTGATCCGAATCAATCCGTATGCTCCCATCTTTAATAGGATTCCCGCTAAAAGCATACATGTACTGTAATGCGCTTCCCCATGGGTATCTGGTAACCACGTATGTAGGGGTATAATCGGCAATTTGACAGCATAAGCAATAAGGAAGCCAAAATAAAATAGTATTTCCAATGTTGCAGGGTATGATTGATTAATTAATCTTTCCAAATCTAATCTTGGTTCGTTGGAACCGTATAAGCCCATACCTAGAACTCCGATTAAGAAAAAAATGGAACCACCTGCAGTATACAAAATAAACTTTGTAGCTGAATAGAGACGCCTCTTCCCCCCGCACATGGATAAAAGTAAGTAAACAGGAATTAATTCTAACTCCCACATGATAAAAAAAAGTAAAAGGTCTCGCGAAGAAAATAATCCTATTTGACCGCTATACATTGCTAGCATCAGGAAATAGAATAATCGGGAATTCCGGGTAACCGGCCAAGCTGCTAAAGTAGCTAAAGTAGTCATAAATCCTGTCAATAAAATAGATCCTAATGAAAGTCCATCGATTCCCAATCTCCAGTGGAAATTGAAGACATCTATCCATTTAGAATCCTCTTTTAATTGGATTAAGGGATCCTCCAATTGGAAATGATAACAGAATGCATAAGTCATTAGAAGGAATTCTAATAAACAAATAGACATAGTATACCACCTAACGATTTTGTTTCCCCTATGAGGTAAAAAGAAAATTAATGAACCCGCAAATATCGGCAAAACAACAAGTATTGTTAACCAAGGAAAAGAACTCATGATAAAGTGATAAAGACAAGATACGTTTTGACCAGAAAAGCCCGTGCTCGATTATTTTGAGCACAGGCTTCTTCGGTAAAGAGGAATCAGACGATTCAAGTGGAATTTTTTGTAACGTATCAATAAGATAGAGCCATGCTGCGGGTTGTCTCAGGTCCTAAATAAACGCGGACACTTAAAAAATCTGTTGGGCAGGCGGATTCGCATCTCTTACAACCCACACAATCTTCGTTTCTTGGCGCGGAAGCAATTTGCTTGGCTTTACATCCATCCCAAGGTATCATTTCTAATACATCTGTTGGACAAGCTCGTACACATTGAGTGCATCCTATACATGTATCATAAATTTTTACGGAATGTGACATTGGATCTATAAATTTTCCTTTTCAACATAAAAATTTTCGATCTGGTCAAAATGAAATTAGTACTATATCAATCAAATGTATTGTAGACACCAGACGAAGCAATGGTTTATCCAAACTTCAACAAATAATGCAATATATTTCTTAATCCGTTTGTGAGAAAGCATGAAAAGAGCCAAGAGACTTTAATTTTGGGCTTCAACAATCATAATTATACGAATTGTATATACGAATTCGAATTAGCCAATAAATTGGCTATCGTCTTTTCAATATAAATTATTGCAATATTCAAATTGCAATATCAATGAATTGCAAAAATTCAACTAAGTAAAAAAGAATACTATGGAATAACCTACTCAAAAAATAGATATTCTCAAATAATAAATAGTATTCATGTTAATATTTCATATTATTATTATATGTGTCCCTTTGTTTAGAAGATTCTATGTCTAATTATTCAAAAAATTAGATTGATTGATACGAGTTGATTTCCTATTACGATGGATGGAAGAAAGAATGGATAATCCAATAGCTGCTTCAGCAGCCGCAAGGGCTATAACAAAAATTGCGAAAATGTCTCCTTTTAATTGGCGGCTATCAAATAGATCAGAAAATGTTACGAGATTTAGATTAATTGAATTCAGTATAAGTTCAAGGCATATTAGAGCTCTAACCAT
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| CDS seq | ATGGTTAGAGCTCTAATATGCCTTGAACTTATACTGAATTCAATTAATCTAAATCTCGTAACATTTTCTGATCTATTTGATAGCCGCCAATTAAAAGGAGACATTTTCGCAATTTTTGTTATAGCCCTTGCGGCTGCTGAAGCAGCTATTGGATTATCCATTCTTTCTTCCATCCATCGATGCACTCAATGTGTACGAGCTTGTCCAACAGATGTATTAGAAATGATACCTTGGGATGGATGTAAAGCCAAGCAAATTGCTTCCGCGCCAAGAAACGAAGATTGTGTGGGTTGTAAGAGATGCGAATCCGCCTGCCCAACAGATTTTTTAAGTGTCCGCGTTTATTTAGGACCTGAGACAACCCGCAGCATGGCTCTATCTTATTGA |
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| Protein seq | MVRALICLELILNSINLNLVTFSDLFDSRQLKGDIFAIFVIALAAAEAAIGLSILSSIHRCTQCVRACPTDVLEMIPWDGCKAKQIASAPRNEDCVGCKRCESACPTDFLSVRVYLGPETTRSMALSY |
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| Function | Photosystem I iron-sulfur center [UniProtKB/Swiss-Prot:P69415] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsARC_10g0003810 | OsARC_10g0003810.01 | Chr10 | 4592227 | 4593146 | - | NAM | ||
| CDS seq | ATGGTTAGAGCTCTAATATGCCTTGAACTTATACTGAATTCAATTAATCTAAATCTCGTAACATTTTCTGATCTATTTGATAGCCGCCAATTAAAAGGAGACATTTTCGCAATTTTTGTTATAGCCCTTGCGGCTGCTGAAGCAGCTATTGGATTATCCATTCTTTCTTCCATCCATCGATGCACTCAATGTGTACGAGCTTGTCCAACAGATGTATTAGAAATGATACCTTGGGATGGATGTAAAGCCAAGCAAATTGCTTCCGCGCCAAGAAACGAAGATTGTGTGGGTTGTAAGAGATGCGAATCCGCCTGCCCAACAGATTTTTTAAGTGTCCGCGTTTATTTAGGACCTGAGACAACCCGCAGCATGGCTCTATCTTATTGA
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| Protein seq | MVRALICLELILNSINLNLVTFSDLFDSRQLKGDIFAIFVIALAAAEAAIGLSILSSIHRCTQCVRACPTDVLEMIPWDGCKAKQIASAPRNEDCVGCKRCESACPTDFLSVRVYLGPETTRSMALSY |
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsARC_10g0003810 | OsARC_10g0003810.02 | Chr10 | 4591205 | 4592736 | - | IsoSeq | ||
| CDS seq | ATGGATGTAAAGCCAAGCAAATTGCTTCCGCGCCAAGAAACGAAGATTGTGTGGGTTGTAAGAGATGCGAATCCGCCTGCCCAACAGATT |
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| Protein seq | MDVKPSKLLPRQETKIVWVVRDANPPAQQI |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 193.841736 | 1.761121 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_09g0485201 | RBH | 0.0 | 0.086725 | 0.0 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os10g21406 | RBH | 146.003571 | 158.332916 | 60.968128 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os09g0485201 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_10g0003610 | RBH | 0.000000 | 0.000000 | 0.000000 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_06g0026130 | RBH | 280.965271 | 12.057311 | 344.592346 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_07g0011350 | RBH | 1438.134644 | 47.039902 | 774.737976 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_10g0003580 | RBH | 12091.941406 | 305.554291 | 4942.904297 |
| Minghui 63 | MH63RS3 | HZAU | NA | NA | NA | NA | NA |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_11g0009940 | RBH | 75.491302 | 0.000000 | 23.295317 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_10G0079200 | RBH | 897.621124 | 35.772089 | 44.932182 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_Ung0066470 | RBH | 0.000000 | 0.0 | 0.000000 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_11g0009970 | RBH | 862.093262 | 37.976284 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_10G003680 | RBH | 29.673664 | 0.000000 | 0.000000 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_04g0004720 | RBH | 1672.676392 | 213.210938 | 2001.084351 |
