Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLiXu_02g0024860 | OGI:02001240 | 16/16 | LIU XU | Os125827RS1 | Gramene(+IsoSeq) | Chr02:25927618-25929733 | ||||||||
| Gene Symbol | MRKc, MRKc, RKc, TRKc | ||||||||||
| DNA seq | atccaacattccaactcgaaagtatacctaccacctggcaaagttgagcagacccggctgccgttttatgcgctccggccgaacaaaggtgcgctattctatctgctggtaatgtttccgctctggcttcgtgccttcagatgcttgccgtttttaccgttgagggtgaattgtgcgcatgtgacaaaagttattcaaaccgttatgctttaaatgacggtagttatttctttcatttgatcaagcgttccgttatgagggatttaaggctttctaaaaaacatcacattgaatctttggacacatgtatgaaacattaaatatagataaaaagaaaaactaattgtacagtttgcatataaatcgtgagacgaatcttttgagcctaattgtgctaacgacggattaattaggctagttatgaaattagttttttcattcgtatctaaaaacccctttcgacatccagtcaacgtccgatatgacacccaaaaatttttatttcgccagctaaacaaggcctaagtttaccaccatatttttttaaaaaactcaagtttaccgaagttagagagtgcatttggcctgtctacctaccccacccccccaaaaaaaaaccctttctttcctttgtttcctctaatctccagggatcctgtacagtgttttcacatacttaatataagcacatcctaccgaggtttaaaaaaaaggagtgcatttcgttgcacaaagtaggtccattcggcggtgataattaatggtaggtaacaattaatctttatgcttcattctttttaaactttgcaggaaaagtcacctatgtcgaccaatcatccggtgaaactcgccatgcttatgcttttagcattattgttgttgtcttatggagttggcagcatccgttgtgcaacggccacagacaacagcacggatatgtcatcgttgctcgaattcaagaaggccatcaatgatccaacgggggcattgaacagttggagcacggtcgttccccattgccagtggatgggtgttaattgtagccgaaggcatgccggccgagtcacggcactcaaccttgctgcccaaggcttgtcgggttcgattcccgcctctgtgggaaacctgacattccttcgtacacttgacctgtccagtaataacttctccagccagatgcctgatcttagcaatctccagaagatacaagtccttaatctgagctacaattcgttgggtggaattatcccagacacgctcactaattgttccaacctgaaggaattacatctctatcataactccctgcgaggtgagattcccaggcaaataggtctcctcatcaatctagtttttttggcccttaacaacaacaatctaactggtgccatccctcaatctctgggtaacattacctatttagaccaggtctatcttgagttgaatcaacttggaggaaacattcctgatgaacttagccaattttccaatataacagtgctggggctaggggataatatgctatcaggtagtataccatcaagcctctttaatttgtcctctcttcaagctctagagttgagcggaaatcagttaggtgggactctaccagttaacatgggtgatcatctcactaatctccaaatactctatatgagcaacaacatgctcgaaggtcatatcccagcttccttaggcaatgcttcgatgctacaaaaaatagttttccaatttaataatttcactggtcagattcctacctcctttggaaaactttcaacgttgattaaattagaccttcaggcaaacaagttcgaagcaaatgatagtgaaagctgggcattcttgcaggctttgggaaactgcagtgttctacaagtgctcgcattagctaataatcagctacagggaataataccaaattcaattggtagcttgcctggcactgttcaatatctcattttgggtggaaacgaactatctggcataattccacctagtatagggaacttctccaggttgattcatttgacactagatgaaaacagtctcactggtaccatgtaacatcctgaaaattcaagacaataaaaatcactaaaattttgaagttttt
More
|
||||||||||
| CDS seq | atgtcgaccaatcatccggtgaaactcgccatgcttatgcttttagcattattgttgttgtcttatggagttggcagcatccgttgtgcaacggccacagacaacagcacggatatgtcatcgttgctcgaattcaagaaggccatcaatgatccaacgggggcattgaacagttggagcacggtcgttccccattgccagtggatgggtgttaattgtagccgaaggcatgccggccgagtcacggcactcaaccttgctgcccaaggcttgtcgggttcgattcccgcctctgtgggaaacctgacattccttcgtacacttgacctgtccagtaataacttctccagccagatgcctgatcttagcaatctccagaagatacaagtccttaatctgagctacaattcgttgggtggaattatcccagacacgctcactaattgttccaacctgaaggaattacatctctatcataactccctgcgaggtgagattcccaggcaaataggtctcctcatcaatctagtttttttggcccttaacaacaacaatctaactggtgccatccctcaatctctgggtaacattacctatttagaccaggtctatcttgagttgaatcaacttggaggaaacattcctgatgaacttagccaattttccaatataacagtgctggggctaggggataatatgctatcaggctttgggaaactgcagtgttctacaagtgctcgcattagctaa
More
|
||||||||||
| Protein seq | MSTNHPVKLAMLMLLALLLLSYGVGSIRCATATDNSTDMSSLLEFKKAINDPTGALNSWSTVVPHCQWMGVNCSRRHAGRVTALNLAAQGLSGSIPASVGNLTFLRTLDLSSNNFSSQMPDLSNLQKIQVLNLSYNSLGGIIPDTLTNCSNLKELHLYHNSLRGEIPRQIGLLINLVFLALNNNNLTGAIPQSLGNITYLDQVYLELNQLGGNIPDELSQFSNITVLGLGDNMLSGFGKLQCSTSARIS |
||||||||||
| Function | LRR receptor-like serine/threonine-protein kinase EFR [UniProtKB/Swiss-Prot:C0LGT6] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLiXu_02g0024860 | OsLiXu_02g0024860.01 | Chr02 | 25928440 | 25929512 | + | NAM | ||
| CDS seq | atgtcgaccaatcatccggtgaaactcgccatgcttatgcttttagcattattgttgttgtcttatggagttggcagcatccgttgtgcaacggccacagacaacagcacggatatgtcatcgttgctcgaattcaagaaggccatcaatgatccaacgggggcattgaacagttggagcacggtcgttccccattgccagtggatgggtgttaattgtagccgaaggcatgccggccgagtcacggcactcaaccttgctgcccaaggcttgtcgggttcgattcccgcctctgtgggaaacctgacattccttcgtacacttgacctgtccagtaataacttctccagccagatgcctgatcttagcaatctccagaagatacaagtccttaatctgagctacaattcgttgggtggaattatcccagacacgctcactaattgttccaacctgaaggaattacatctctatcataactccctgcgaggtgagattcccaggcaaataggtctcctcatcaatctagtttttttggcccttaacaacaacaatctaactggtgccatccctcaatctctgggtaacattacctatttagaccaggtctatcttgagttgaatcaacttggaggaaacattcctgatgaacttagccaattttccaatataacagtgctggggctaggggataatatgctatcaggctttgggaaactgcagtgttctacaagtgctcgcattagctaa
More
|
|||||||
| Protein seq | MSTNHPVKLAMLMLLALLLLSYGVGSIRCATATDNSTDMSSLLEFKKAINDPTGALNSWSTVVPHCQWMGVNCSRRHAGRVTALNLAAQGLSGSIPASVGNLTFLRTLDLSSNNFSSQMPDLSNLQKIQVLNLSYNSLGGIIPDTLTNCSNLKELHLYHNSLRGEIPRQIGLLINLVFLALNNNNLTGAIPQSLGNITYLDQVYLELNQLGGNIPDELSQFSNITVLGLGDNMLSGFGKLQCSTSARIS
More
|
|||||||
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLiXu_02g0024860 | OsLiXu_02g0024860.02 | Chr02 | 25927618 | 25929733 | + | IsoSeq | ||
| CDS seq | atccaacattccaactcgaaagtatacctaccacctggcaaagttgagcagacccggctgccgttttatgcgctccggccgaacaaaggaaaagtcacctatgtcgaccaatcatccggtgaaactcgccatgcttatgcttttagcattattgttgttgtcttatggagttggcagcatccgttgtgcaacggccacagacaacagcacggatatgtcatcgttgctcgaattcaagaaggccat
More
|
|||||||
| Protein seq | IQHSNSKVYLPPGKVEQTRLPFYALRPNKGKVTYVDQSSGETRHAYAFSIIVVVLWSWQHPLCNGHRQQHGYVIVARIQEGH |
|||||||
| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 32.739056 | 0.000000 | 2.989254 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_02g0210700 | SBH | 0.000000 | 0.064002 | 0.000000 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os02g40180 | SBH | 1.164243 | 0.429848 | 0.0 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os02g0210700 | SBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_02g0020930 | RBH | 0.224015 | 0.0 | 1.065708 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_02g0025230 | RBH | 0.246092 | 0.000000 | 0.510617 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_02g0025060 | SBH | 8.845984 | 0.000000 | 17.735216 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_02g0020740 | RBH | 0.027518 | 0.028389 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_02g0024740 | RBH | 0.833541 | 0.0 | 0.566644 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_02G0396500 | SBH | 0.7189395 | 0.971307 | 0.895161 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_02g0024620 | RBH | 0.032811 | 0.0 | 0.078690 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_02G0425400 | SBH | 1.672875 | 0.3362355 | 3.077142 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_02g0004180 | SBH | 0.043297 | 0.057747 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_02g0024660 | SBH | 4.461609 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_02g0008990 | SBH | 0.0 | 0.000000 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_02g0024690 | SBH | 0.035031 | 0.082412 | 0.021348 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_02g0004290 | SBH | 0.032945 | 0.534010 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_02G024900 | SBH | 0.199466 | 0.184480 | 0.440630 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_02g0024740 | RBH | 0.0 | 0.0 | 1.133679 |
