Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLiXu_02g0012270 | OGI:02028560 | 16/16 | LIU XU | Os125827RS1 | Gramene(+IsoSeq) | Chr02:10264341-10268621 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | cataattttatcatcatactttgatgctttacatcctgtcaagccatactgtggatcaccacaaatacccatattgtggtcaagtgaaacaacagtaacacttttaatggtagataaacctaaaaatcttccactcaaactgttgtaagataagttcaggtcttgtagtttgtaaaggtaagagagtctcaatgggatggcaccacttaaataatttctactcaaatctagctcatgcaggtcaaagcaataaccaagctcttgtggtattggacctgtcagtaagttacctgacattcgtacagaaaacaaattgcgacattgtcctatctcaggtggaatgctacctgtaaatcgattgttgcttaaatccagatcagtaagattacctagaactcctatttctggtgacagaacaccacttaagtcattggactcgagtcctacagttctcagattggtcaatttccaaaaggttgaagggatgggactgatgattcggttgttggaaagatccatgcttcgtaagctcgttaaatttcctatacttgtaggaatcaaacctgtgatttcatttgtggagagatccatgttttgcaagctcgttaaatttcctatactttcaggaatgaaacccgtgatttcatttgtggagagatccatgttttgtaagcttgttaaatttcctatactttcaggaatgaaacccgtgattttatttagggagagatccaacaagtttaaatttgttagattccctatggttgtaggtatggagccattgatattattataagccagatatagcagtactaaactatgaagcatcccgatctcacgtggaatatgaccagaaagattgttaaagccaagatgtagatgatacaatctagtcaagtttcccaaactggaaggtattgggccagttaatttgttgtacgttaaattgaggtactccaagttatgtaacgtgccaggtgtgcaatcgaatatccttcctgacaaataattggaagagaggtcgaggaaggctaggttcgtaagattacctatcgatggcgggatggatccattgagcacattgccagagagatccaagtaagagagctcagcaagacgaccaatatcagatggaattggtccagagagagagttcatggcaaggtcaagatggacaagatgaggcaattctgtaaatcggagcttgctcaaaccaccggagatgccacatgaataaagtgtaatgtttgtcacaactaggatggcgtcacgctcatggccatgaccatgagccaccatggagctgcagcctatgcctggccacctgcatgggctggttgcgttggtccataaatctaggtcgctgtagtaggttagatcagatttccattggagaagtgcttcagcttgccgatccaacgtagtatttgcaattgcaaggcaggaaagacactgcagcgaaatcagcagaaccagcaatagctcctgtaagacaaacagtgtcatcttgtgttttgagtagcagtgtaagtgaagctctaaaacacacacatttatattgaaagctggacagaaagcgaacaaatttaaccaaggagaccttgactctgacttcaggtaaatggatcaataatgcatgctcgtgacaggactagtggagtcagtcaatgccccaaggaataaggtgcatgcacctccatcactccttgtgcaacacaatgaaatccatggctcatacaagaaaatcaagaacacattgttggcacgtttagaaagaaaatacgcatgaatcggttcataacttcatgtttagtttggaggttatttctatgtatggatatctttaacaatataacaatataaaccagaagctctttgtactgttttgatggagtttcttgatttttcttttatttccccaaccaaaaagtaccttcactatattgagctttgcaaaaaaaaaaaaaaaaaaaacaaaagcacaaggtgtaggctatgatagtaacattagtaaggataaaaaaaagcatggataggaaagcagcagcaacgaaaagctccaagacgaggagtttcatctttgtgcaggtgaagtgaagaccaggtcaccgagatgcatgatgtgttgttgatggctgcagtcaaagagacactttattatagccaaggagacccttgactccatctagatcaatggaacgtactgatattgatgtgatactgatactgatgcaaacagatactggcaatcaatggttgctgtcttgcagagagagccatccttccaaccctcaatagaagaagactagcagaggcagtctcggtcattggccccaggaacaaggcagcacagcgtgcaaaatcttaaaatcctaactcatatcaccagagatccatggccaattcctagatttttctaagggcgaaggaatgtgaagcagagcacgagcatgcgggccgaatcctgttaatcgatcgcacatactcctatgtgatatgaaaaacaacgaacattgattagttataccttcctagcgatgagtcgatgctagctgcagatacaaagtagaaacctaggaagattcagcacgctgcagctgcagcatcttgccatctagccctccacggccatccaatcgcgcctcggttggccatcgccagcctcaggatttccaccatcctgcaggaacaggctgccgaaggaaggaaaggaagagggtaatgcattggccatttggccagcggtgggagaggaacatggtggggtggttttccttttttaatcttgaactgatttactgtgaatttctgtgttcagaacttcagaagatgctttttcaaataagttttggtgagttgctttccttctgttggcaagcatatatagcaccccatttcccccatttactcaaataaattcatatatctatttaggcccctttattttggcttacattgttttataagctggtgtttttaaaccttaattaagagttcagtgatgaagtccaaactattcttcacacaagttaaaaagaaaaacctactcaaactattcttcacacttttgcgtagcggaatagtggcttatgactttaaaacagaaaaaaaaaaaggctatatgtttttgcgcttggactttttggcgtataatgatatgtataacggtctctagatgcatgcaaggcttagttcgaattagatgttgtgcttgcatcatgcagaactatgtgagccattagtataggattcagtaagtaataattattataaacttaaaaacgtatttatttgattttttaaggaacttctataaataaagtttttgcatgaaatatatcgttattagtttgaaaaatgtgcccgtggtaagccaaaatgaactgagccttgaagttgccaacaaccactcttgacgaaagaaacgtacgtggcgataataggagaatatgggcgtttacagggtagtcttcaacaagagttcatattcgggtccaatgcgaaaaatgcgttttttggcacagggatgaattattgggagtgcgcgaaattggctttagaggtcggatgggagcggaggaggcggcacagttcatcctgcagatgttaccgctcgtccactgcgtgaccgccacaatcgacgatggagtgactgacacacgcctcctccaccatgccgcgaccactagtcctctaccatgatgtcctttgctccaccactcggctactctgccactcttagtatagtgtgccaattgtagaattgattagtccttctgacagcaaactggaagagagattgagggagatgtcctctaagattacctatatatggatgttgggatggatccagaaagtctattgctggagagatccaattcagagagctcagcaagaccaccgatgcttgatggaattggccccgagaaagagcttctaccaagattgaggatttgaagatgtggcaattctgcgaattggagcttgtccaaaccgcgagagatatggcacgattgaagcgaaatggtaagcacaacagctgggacggcatcactctggccactggtgctgcaggcgatgccggtccagtcacatggactggtattgttgctccatgagcttaggcagtaactctgactgtctagtcctgattttcattgcagaggcatatctgcttgccggtctagctgggtcactgtagaatttgcgagacaaaagaggcatatattgtaaggaaagaagcaacaccaccacgaacagctccaaggcaaagaatttcat
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| CDS seq | atgaaattctttgccttggagctgttcgtggtggtgttgcttctttccttacaatatatgcctcttttgtctcgcaaattctacagtgacccagctagaccggcaagcagatatgcctctgcaatgaaaatcaggactagacagtcagatccatgtgactggaccggcatcgcctgcagcaccagtggccagagtgatgccgtcccagctgttgtgcttaccatttcgcttcaatcgtgccatatctctcgcggtttggacaagctccaattcgcagaattgccacatcttcaaatcctcaatcttggtagaagctctttctcggggccaattccatcaagcatcggtggtcttgctgagctctctgaattggatctctccagcaatagactttctggatccatcccaacatccatatatagaggacatctccctcaatctctcttccagtttgctgtcagaaggactaatcaattctacaattggcacactatactaagagagctattgctggttctgctgatttcgctgcagtgtctttcctgccttgcaattgcaaatactacgttggatcggcaagctgaagcacttctccaatggaaatctgatctaacctactacagcgacctagatttatggaccaacgcaaccagcccatgcaggtggccaggcataggctgcagctccatggtggctcatggtcatggccatgagcgtgacgccatcctagttgtgacaaacattacactttattcatgtggcatctccggtggtttgagcaagctccgatttacagaattgcctcatcttgtccatcttgaccttgccatgaactctctctctggaccaattccatctgatattggtcgtcttgctgagctctcttacttggatctctctggcaatgtgctcaatggatccatcccgccatcgataggaaatttaacgagcttgcaaaacatggatctctccacaaatgaaatcacaggtttgattcctacaagtataggaaatttaacgagcttacgaagcatggatctttccaacaaccgaatcatcagtcccatcccttcaaccttttggaaattgaccaatctgagaactgtaggactcgagtccaatgacttaagtggtgttctgtcaccagaaataggagttctaggtaatcttactgatctggatttaagcaacaatcgatttacaggtagcattccacctgagataggacaatgtcgcaatttgttttctgtacgaatgtcaggtccaataccacaagagcttggttattgctttgacctgcatgagctagatttgagtagaaattatttaagtggtgccatcccattgagactctcttacctttacaaactacaagacctgaacttatcttacaacagtttgagtggaagatttttaggtttatctaccattaaaagtgttactgttgtttcacttgaccacaatatgggtatttgtggtgatccacagtatggcttgacaggatgtaaagcatcaaagtatgatgataaaattatg
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| Protein seq | MKFFALELFVVVLLLSLQYMPLLSRKFYSDPARPASRYASAMKIRTRQSDPCDWTGIACSTSGQSDAVPAVVLTISLQSCHISRGLDKLQFAELPHLQILNLGRSSFSGPIPSSIGGLAELSELDLSSNRLSGSIPTSIYRGHLPQSLFQFAVRRTNQFYNWHTILRELLLVLLISLQCLSCLAIANTTLDRQAEALLQWKSDLTYYSDLDLWTNATSPCRWPGIGCSSMVAHGHGHERDAILVVTNITLYSCGISGGLSKLRFTELPHLVHLDLAMNSLSGPIPSDIGRLAELSYLDLSGNVLNGSIPPSIGNLTSLQNMDLSTNEITGLIPTSIGNLTSLRSMDLSNNRIISPIPSTFWKLTNLRTVGLESNDLSGVLSPEIGVLGNLTDLDLSNNRFTGSIPPEIGQCRNLFSVRMSGPIPQELGYCFDLHELDLSRNYLSGAIPLRLSYLYKLQDLNLSYNSLSGRFLGLSTIKSVTVVSLDHNMGICGDPQYGLTGCKASKYDDKIM |
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| Function | Probable leucine-rich repeat receptor-like protein kinase At1g35710 [UniProtKB/Swiss-Prot:Q9LP24] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLiXu_02g0012270 | OsLiXu_02g0012270.01 | Chr02 | 10264341 | 10268621 | - | NAM | ||
| CDS seq | atgaaattctttgccttggagctgttcgtggtggtgttgcttctttccttacaatatatgcctcttttgtctcgcaaattctacagtgacccagctagaccggcaagcagatatgcctctgcaatgaaaatcaggactagacagtcagatccatgtgactggaccggcatcgcctgcagcaccagtggccagagtgatgccgtcccagctgttgtgcttaccatttcgcttcaatcgtgccatatctctcgcggtttggacaagctccaattcgcagaattgccacatcttcaaatcctcaatcttggtagaagctctttctcggggccaattccatcaagcatcggtggtcttgctgagctctctgaattggatctctccagcaatagactttctggatccatcccaacatccatatatagaggacatctccctcaatctctcttccagtttgctgtcagaaggactaatcaattctacaattggcacactatactaagagagctattgctggttctgctgatttcgctgcagtgtctttcctgccttgcaattgcaaatactacgttggatcggcaagctgaagcacttctccaatggaaatctgatctaacctactacagcgacctagatttatggaccaacgcaaccagcccatgcaggtggccaggcataggctgcagctccatggtggctcatggtcatggccatgagcgtgacgccatcctagttgtgacaaacattacactttattcatgtggcatctccggtggtttgagcaagctccgatttacagaattgcctcatcttgtccatcttgaccttgccatgaactctctctctggaccaattccatctgatattggtcgtcttgctgagctctcttacttggatctctctggcaatgtgctcaatggatccatcccgccatcgataggaaatttaacgagcttgcaaaacatggatctctccacaaatgaaatcacaggtttgattcctacaagtataggaaatttaacgagcttacgaagcatggatctttccaacaaccgaatcatcagtcccatcccttcaaccttttggaaattgaccaatctgagaactgtaggactcgagtccaatgacttaagtggtgttctgtcaccagaaataggagttctaggtaatcttactgatctggatttaagcaacaatcgatttacaggtagcattccacctgagataggacaatgtcgcaatttgttttctgtacgaatgtcaggtccaataccacaagagcttggttattgctttgacctgcatgagctagatttgagtagaaattatttaagtggtgccatcccattgagactctcttacctttacaaactacaagacctgaacttatcttacaacagtttgagtggaagatttttaggtttatctaccattaaaagtgttactgttgtttcacttgaccacaatatgggtatttgtggtgatccacagtatggcttgacaggatgtaaagcatcaaagtatgatgataaaattatg
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| Protein seq | MKFFALELFVVVLLLSLQYMPLLSRKFYSDPARPASRYASAMKIRTRQSDPCDWTGIACSTSGQSDAVPAVVLTISLQSCHISRGLDKLQFAELPHLQILNLGRSSFSGPIPSSIGGLAELSELDLSSNRLSGSIPTSIYRGHLPQSLFQFAVRRTNQFYNWHTILRELLLVLLISLQCLSCLAIANTTLDRQAEALLQWKSDLTYYSDLDLWTNATSPCRWPGIGCSSMVAHGHGHERDAILVVTNITLYSCGISGGLSKLRFTELPHLVHLDLAMNSLSGPIPSDIGRLAELSYLDLSGNVLNGSIPPSIGNLTSLQNMDLSTNEITGLIPTSIGNLTSLRSMDLSNNRIISPIPSTFWKLTNLRTVGLESNDLSGVLSPEIGVLGNLTDLDLSNNRFTGSIPPEIGQCRNLFSVRMSGPIPQELGYCFDLHELDLSRNYLSGAIPLRLSYLYKLQDLNLSYNSLSGRFLGLSTIKSVTVVSLDHNMGICGDPQYGLTGCKASKYDDKIM
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.191755 | 0.000000 | 0.372187 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_02g0277700 | SBH | 0.0 | 0.347361 | 0.606831 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os02g17730 | RBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os02g0277700 | SBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_02g0004120 | SBH | 0.124114 | 14.442955 | 1.259517 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_02g0004510 | SBH | 0.087645 | 0.000000 | 0.391188 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_02g0004360 | SBH | 0.038443 | 0.407024 | 0.900679 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_02g0004020 | SBH | 0.031011 | 0.040793 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_02g0012020 | RBH | 0.453561 | 0.0 | 3.162713 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_02G0159000 | RBH | 0.414672 | 0.920884 | 0.4761305 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_02g0011850 | RBH | 0.000000 | 0.0 | 0.104738 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_02G0171700 | RBH | 0.4022805 | 1.0133105 | 2.001527 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_02g0012410 | RBH | 0.053935 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_02g0004210 | SBH | 0.000000 | 0.847441 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_02g0012430 | SBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_02g0012060 | RBH | 0.067240 | 0.000000 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_02G004310 | SBH | 0.850914 | 0.737580 | 0.524094 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_02g0012220 | SBH | 0.0 | 1.688463 | 1.091499 |
