Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLaMu_11g0023510 | OGI:11080250 | 1/16 | LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | Chr11:30008463-30011510 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | atggcaaccatattagattctttggtcggatcatgtgccaataagttgaaagagattattactgaagaggtgatacttattctagggatacaagaagagctcgcagagttgcagcggaagactgaactcatacattgttgtattagtgatgctgaggcaaggaggatggaagagtcaacagttgacaattggcttggtcagctaagagaagttctatatgatgttgatgatattatcgacttggctagatttaagggaagcattctactaactgatcatccttcatcatcatcatcaaggaagtcaattgcttgcactggcctgtcaatttccacttgcttttctaatgttcaagcacgtcatgaggttgctgtgaaaattagaagtctcaacaggaagatagaaaacatttcaaaggacagagtatttttgacactcaagagtacggttcctactggaagcagttcagtattgagaatgagaaaaagttcccacctgcttgagcccaacattgttggcaaggagatcatacatgcctgcagaaaaatggtagatttagtgcttgaacataaggggagaaaacattataagcttgcaattgttgggactgggggagttggtaagacaacattagctcagaaaatatacaatgatagaaaaataaaaggaagtttcaacaaaaaggcatgggtatgtgtttccaaagtgtactctgaagcttctcttttgagagaacttcttcgaattatggaagttcatcatgaccaagatgaatcaatcggagagctccagagcaagcttgaaataacaattaaggaaacaagttttttccttgtgttggatgacatgtggcaatctgatgcatggacaaatttattaagaattccaatgcatgctgcagcaacgggagcaattctcataacaactagaaataatattgtttccttagaaattggagtggaccatacttatcgagttgatttgatgccaatcgatgtaggatgggagctactttggaagagcatgaatatcagtgaaagcatagaattgcaaactctccaggatgttgggattgagattgttcgcaaatgtggttgccttcctcttgcaatcaaggttattgctagagtgctagcgagtaaagaacaaacagagaacgaatggaaaaaaatattgagcaataatgcttggttcatgaacaagcttcctaatgatttgagaggtgctttatatctgagttacgatgagttaccacgtcatttgaagcaatgctttctttattgtagtttatatcctgaagatgcaaacatttaccgtgatgatcttacaaggatgtggatcgctgaaggctttatagaggaccatggaggtcaactactagaagaaacagcagacgagtattactatgagctgatccaccggaaccttcttcaaccagatggtttatattatgaccacagcagctgcaaaatgcatgatcttttaaggcagcttgcttgttatttgtcaagggaagaatgttttgttggaaacccagaatcattggtaggtaacactgtgtctaaacttcgatgtgtttcagtcgtcacagataagaacatggtaatgttacctagtatggacaaggtgcaatataaagtacggacttggaaaacttcttatgagaaaaaactcagagttgataactcatatttcaagagatttccttaccttcgcgttttagatttgactgattcatttgtaccaagcatcccaagttgcatcgggaatttgatccatctacgtttgcttgatcttgatggtaccaatgtatcttgtcttccagagtccattagcaacctaaaaaatcttcaaatattgaacttggagaggtgtgttgctttgcacagtcttccttcagcgatcacccaactgtgcaatttaaggcgccttggcctcaagtattcaccgatagatcaagttccaaaagggattggcaaattggaatttctcaatgatgtagaagggtttccagtctatggtggcagtactaatactaaaatgcaagatggatggaacttggaagagttggctcatctttaccagctaaggcggcttcaaatgattaaattggaaagaacagcttaccgcactacttacccattgttaacagacaaagggtttctgaaatttttgtatctttggtgtactgaacgtacagatgaaccatacacagaaaaagatttcagaaatattgaaaagatctttgagcagctaattccgccgtgcaacctggaagatcttgctattgttaaattcttcggtcgccagtatcccttctagatagattctacccatttggcttatgtaaaatccttgcacctcttcaagtgcaaattctgtatgcaccttccaccagttgggcagctacccaacttgaaatatctaaaaattgagggagcagctgcagttaccatgattggacccgaatttgctggctgcagggtgagtaatcttggacgaacagttgctttccccaagcttgaagagttgctcatacgagatatgcccaactgggaagagtggttctttattgatgaagcaacgtcaattgctaaggaaagggttgatgatggagattctgcaatgccaaaagaggaagccttacctccagggatgcagctactgtcacggttgaggaggctggaactttctggctgcccaaagctgaaagctcttccacggcagcttgcacagattaatagtctgaaggagatcgaactaagatgggcaagcagcctgaaagtggtggagaactttcccctcatctctgagatgcttttgattgcgacatgtcaagccctggagaaagtctctaaccttcctcaagtgcgagagctgcgcgtgcaagattgtccaaacttgagacgtgttgaggagttgggcactttggagcagctgtggctttatgaggatatgcatgaggtctctacattttgggtgtctgggcttcaacagcagtgccgacaacatcatggagaggatcttgatgtctacaattggacatag
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| CDS seq | atggcaaccatattagattctttggtcggatcatgtgccaataagttgaaagagattattactgaagaggtgatacttattctagggatacaagaagagctcgcagagttgcagcggaagactgaactcatacattgttgtattagtgatgctgaggcaaggaggatggaagagtcaacagttgacaattggcttggtcagctaagagaagttctatatgatgttgatgatattatcgacttggctagatttaagggaagcattctactaactgatcatccttcatcatcatcatcaaggaagtcaattgcttgcactggcctgtcaatttccacttgcttttctaatgttcaagcacgtcatgaggttgctgtgaaaattagaagtctcaacaggaagatagaaaacatttcaaaggacagagtatttttgacactcaagagtacggttcctactggaagcagttcagtattgagaatgagaaaaagttcccacctgcttgagcccaacattgttggcaaggagatcatacatgcctgcagaaaaatggtagatttagtgcttgaacataaggggagaaaacattataagcttgcaattgttgggactgggggagttggtaagacaacattagctcagaaaatatacaatgatagaaaaataaaaggaagtttcaacaaaaaggcatgggtatgtgtttccaaagtgtactctgaagcttctcttttgagagaacttcttcgaattatggaagttcatcatgaccaagatgaatcaatcggagagctccagagcaagcttgaaataacaattaaggaaacaagttttttccttgtgttggatgacatgtggcaatctgatgcatggacaaatttattaagaattccaatgcatgctgcagcaacgggagcaattctcataacaactagaaataatattgtttccttagaaattggagtggaccatacttatcgagttgatttgatgccaatcgatgtaggatgggagctactttggaagagcatgaatatcagtgaaagcatagaattgcaaactctccaggatgttgggattgagattgttcgcaaatgtggttgccttcctcttgcaatcaaggttattgctagagtgctagcgagtaaagaacaaacagagaacgaatggaaaaaaatattgagcaataatgcttggttcatgaacaagcttcctaatgatttgagaggtgctttatatctgagttacgatgagttaccacgtcatttgaagcaatgctttctttattgtagtttatatcctgaagatgcaaacatttaccgtgatgatcttacaaggatgtggatcgctgaaggctttatagaggaccatggaggtcaactactagaagaaacagcagacgagtattactatgagctgatccaccggaaccttcttcaaccagatggtttatattatgaccacagcagctgcaaaatgcatgatcttttaaggcagcttgcttgttatttgtcaagggaagaatgttttgttggaaacccagaatcattggtaggtaacactgtgtctaaacttcgatgtgtttcagtcgtcacagataagaacatggtaatgttacctagtatggacaaggtgcaatataaagtacggacttggaaaacttcttatgagaaaaaactcagagttgataactcatatttcaagagatttccttaccttcgcgttttagatttgactgattcatttgtaccaagcatcccaagttgcatcgggaatttgatccatctacgtttgcttgatcttgatggtaccaatgtatcttgtcttccagagtccattagcaacctaaaaaatcttcaaatattgaacttggagaggtgtgttgctttgcacagtcttccttcagcgatcacccaactgtgcaatttaaggcgccttggcctcaagtattcaccgatagatcaagttccaaaagggattggcaaattggaatttctcaatgatgtagaagggtttccagtctatggtggcagtactaatactaaaatgcaagatggatggaacttggaagagttggctcatctttaccagctaaggcggcttcaaatgattaaattggaaagaacagcttaccgcactacttacccattgttaacagacaaagggtttctgaaatttttgtatctttggtgtactgaacgtacagatgaaccatacacagaaaaagatttcagaaatattgaaaagatctttgagcagctaattccgccgtgcaacctggaagatcttgctattgttaaattcttcggtcgccaggtgagtaatcttggacgaacagttgctttccccaagcttgaagagttgctcatacgagatatgcccaactgggaagagtggttctttattgatgaagcaacgtcaattgctaaggaaagggttgatgatggagattctgcaatgccaaaagaggaagccttacctccagggatgcagctactgtcacggttgaggaggctggaactttctggctgcccaaagctgaaagctcttccacggcagcttgcacagattaatagtctgaaggagatcgaactaagatgggcaagcagcctgaaagtggtggagaactttcccctcatctctgagatgcttttgattgcgacatgtcaagccctggagaaagtctctaaccttcctcaagtgcgagagctgcgcgtgcaagattgtccaaacttgagacgtgttgaggagttgggcactttggagcagctgtggctttatgaggatatgcatgaggtctctacattttgggtgtctgggcttcaacagcagtgccgacaacatcatggagaggatcttgatgtctacaattggacatag
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| Protein seq | MATILDSLVGSCANKLKEIITEEVILILGIQEELAELQRKTELIHCCISDAEARRMEESTVDNWLGQLREVLYDVDDIIDLARFKGSILLTDHPSSSSSRKSIACTGLSISTCFSNVQARHEVAVKIRSLNRKIENISKDRVFLTLKSTVPTGSSSVLRMRKSSHLLEPNIVGKEIIHACRKMVDLVLEHKGRKHYKLAIVGTGGVGKTTLAQKIYNDRKIKGSFNKKAWVCVSKVYSEASLLRELLRIMEVHHDQDESIGELQSKLEITIKETSFFLVLDDMWQSDAWTNLLRIPMHAAATGAILITTRNNIVSLEIGVDHTYRVDLMPIDVGWELLWKSMNISESIELQTLQDVGIEIVRKCGCLPLAIKVIARVLASKEQTENEWKKILSNNAWFMNKLPNDLRGALYLSYDELPRHLKQCFLYCSLYPEDANIYRDDLTRMWIAEGFIEDHGGQLLEETADEYYYELIHRNLLQPDGLYYDHSSCKMHDLLRQLACYLSREECFVGNPESLVGNTVSKLRCVSVVTDKNMVMLPSMDKVQYKVRTWKTSYEKKLRVDNSYFKRFPYLRVLDLTDSFVPSIPSCIGNLIHLRLLDLDGTNVSCLPESISNLKNLQILNLERCVALHSLPSAITQLCNLRRLGLKYSPIDQVPKGIGKLEFLNDVEGFPVYGGSTNTKMQDGWNLEELAHLYQLRRLQMIKLERTAYRTTYPLLTDKGFLKFLYLWCTERTDEPYTEKDFRNIEKIFEQLIPPCNLEDLAIVKFFGRQVSNLGRTVAFPKLEELLIRDMPNWEEWFFIDEATSIAKERVDDGDSAMPKEEALPPGMQLLSRLRRLELSGCPKLKALPRQLAQINSLKEIELRWASSLKVVENFPLISEMLLIATCQALEKVSNLPQVRELRVQDCPNLRRVEELGTLEQLWLYEDMHEVSTFWVSGLQQQCRQHHGEDLDVYNWT |
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| Function | Putative disease resistance protein RGA3 [UniProtKB/Swiss-Prot:Q7XA40] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLaMu_11g0023510 | OsLaMu_11g0023510.01 | Chr11 | 30008463 | 30011510 | + | NAM | ||
| CDS seq | atggcaaccatattagattctttggtcggatcatgtgccaataagttgaaagagattattactgaagaggtgatacttattctagggatacaagaagagctcgcagagttgcagcggaagactgaactcatacattgttgtattagtgatgctgaggcaaggaggatggaagagtcaacagttgacaattggcttggtcagctaagagaagttctatatgatgttgatgatattatcgacttggctagatttaagggaagcattctactaactgatcatccttcatcatcatcatcaaggaagtcaattgcttgcactggcctgtcaatttccacttgcttttctaatgttcaagcacgtcatgaggttgctgtgaaaattagaagtctcaacaggaagatagaaaacatttcaaaggacagagtatttttgacactcaagagtacggttcctactggaagcagttcagtattgagaatgagaaaaagttcccacctgcttgagcccaacattgttggcaaggagatcatacatgcctgcagaaaaatggtagatttagtgcttgaacataaggggagaaaacattataagcttgcaattgttgggactgggggagttggtaagacaacattagctcagaaaatatacaatgatagaaaaataaaaggaagtttcaacaaaaaggcatgggtatgtgtttccaaagtgtactctgaagcttctcttttgagagaacttcttcgaattatggaagttcatcatgaccaagatgaatcaatcggagagctccagagcaagcttgaaataacaattaaggaaacaagttttttccttgtgttggatgacatgtggcaatctgatgcatggacaaatttattaagaattccaatgcatgctgcagcaacgggagcaattctcataacaactagaaataatattgtttccttagaaattggagtggaccatacttatcgagttgatttgatgccaatcgatgtaggatgggagctactttggaagagcatgaatatcagtgaaagcatagaattgcaaactctccaggatgttgggattgagattgttcgcaaatgtggttgccttcctcttgcaatcaaggttattgctagagtgctagcgagtaaagaacaaacagagaacgaatggaaaaaaatattgagcaataatgcttggttcatgaacaagcttcctaatgatttgagaggtgctttatatctgagttacgatgagttaccacgtcatttgaagcaatgctttctttattgtagtttatatcctgaagatgcaaacatttaccgtgatgatcttacaaggatgtggatcgctgaaggctttatagaggaccatggaggtcaactactagaagaaacagcagacgagtattactatgagctgatccaccggaaccttcttcaaccagatggtttatattatgaccacagcagctgcaaaatgcatgatcttttaaggcagcttgcttgttatttgtcaagggaagaatgttttgttggaaacccagaatcattggtaggtaacactgtgtctaaacttcgatgtgtttcagtcgtcacagataagaacatggtaatgttacctagtatggacaaggtgcaatataaagtacggacttggaaaacttcttatgagaaaaaactcagagttgataactcatatttcaagagatttccttaccttcgcgttttagatttgactgattcatttgtaccaagcatcccaagttgcatcgggaatttgatccatctacgtttgcttgatcttgatggtaccaatgtatcttgtcttccagagtccattagcaacctaaaaaatcttcaaatattgaacttggagaggtgtgttgctttgcacagtcttccttcagcgatcacccaactgtgcaatttaaggcgccttggcctcaagtattcaccgatagatcaagttccaaaagggattggcaaattggaatttctcaatgatgtagaagggtttccagtctatggtggcagtactaatactaaaatgcaagatggatggaacttggaagagttggctcatctttaccagctaaggcggcttcaaatgattaaattggaaagaacagcttaccgcactacttacccattgttaacagacaaagggtttctgaaatttttgtatctttggtgtactgaacgtacagatgaaccatacacagaaaaagatttcagaaatattgaaaagatctttgagcagctaattccgccgtgcaacctggaagatcttgctattgttaaattcttcggtcgccaggtgagtaatcttggacgaacagttgctttccccaagcttgaagagttgctcatacgagatatgcccaactgggaagagtggttctttattgatgaagcaacgtcaattgctaaggaaagggttgatgatggagattctgcaatgccaaaagaggaagccttacctccagggatgcagctactgtcacggttgaggaggctggaactttctggctgcccaaagctgaaagctcttccacggcagcttgcacagattaatagtctgaaggagatcgaactaagatgggcaagcagcctgaaagtggtggagaactttcccctcatctctgagatgcttttgattgcgacatgtcaagccctggagaaagtctctaaccttcctcaagtgcgagagctgcgcgtgcaagattgtccaaacttgagacgtgttgaggagttgggcactttggagcagctgtggctttatgaggatatgcatgaggtctctacattttgggtgtctgggcttcaacagcagtgccgacaacatcatggagaggatcttgatgtctacaattggacatag
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| Protein seq | MATILDSLVGSCANKLKEIITEEVILILGIQEELAELQRKTELIHCCISDAEARRMEESTVDNWLGQLREVLYDVDDIIDLARFKGSILLTDHPSSSSSRKSIACTGLSISTCFSNVQARHEVAVKIRSLNRKIENISKDRVFLTLKSTVPTGSSSVLRMRKSSHLLEPNIVGKEIIHACRKMVDLVLEHKGRKHYKLAIVGTGGVGKTTLAQKIYNDRKIKGSFNKKAWVCVSKVYSEASLLRELLRIMEVHHDQDESIGELQSKLEITIKETSFFLVLDDMWQSDAWTNLLRIPMHAAATGAILITTRNNIVSLEIGVDHTYRVDLMPIDVGWELLWKSMNISESIELQTLQDVGIEIVRKCGCLPLAIKVIARVLASKEQTENEWKKILSNNAWFMNKLPNDLRGALYLSYDELPRHLKQCFLYCSLYPEDANIYRDDLTRMWIAEGFIEDHGGQLLEETADEYYYELIHRNLLQPDGLYYDHSSCKMHDLLRQLACYLSREECFVGNPESLVGNTVSKLRCVSVVTDKNMVMLPSMDKVQYKVRTWKTSYEKKLRVDNSYFKRFPYLRVLDLTDSFVPSIPSCIGNLIHLRLLDLDGTNVSCLPESISNLKNLQILNLERCVALHSLPSAITQLCNLRRLGLKYSPIDQVPKGIGKLEFLNDVEGFPVYGGSTNTKMQDGWNLEELAHLYQLRRLQMIKLERTAYRTTYPLLTDKGFLKFLYLWCTERTDEPYTEKDFRNIEKIFEQLIPPCNLEDLAIVKFFGRQVSNLGRTVAFPKLEELLIRDMPNWEEWFFIDEATSIAKERVDDGDSAMPKEEALPPGMQLLSRLRRLELSGCPKLKALPRQLAQINSLKEIELRWASSLKVVENFPLISEMLLIATCQALEKVSNLPQVRELRVQDCPNLRRVEELGTLEQLWLYEDMHEVSTFWVSGLQQQCRQHHGEDLDVYNWT
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 5.447255 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_11g0676800 | SBH | 0.0 | 0.000000 | 1.008491 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os11g45160 | SBH | 0.0 | 0.000000 | 0.259605 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os11g0676800 | SBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_11g0023810 | SBH | 0.0 | 0.0 | 0.0 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_11g0023760 | SBH | 0.000000 | 4.853582 | 0.0 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_11g0023400 | SBH | 0.0 | 5.246101 | 0.271530 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_11g0022920 | SBH | 0.080717 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_11g0023130 | SBH | 0.0 | 2.865955 | 0.108137 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_11G0419900 | SBH | 0.593919 | 1.271223 | 0 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_11g0023990 | SBH | 0.0 | 0.110572 | 0.353205 |
| Zhenshan 97 | ZS97RS3 | HZAU | NA | NA | NA | NA | NA |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_11g0023740 | SBH | 0.024663 | 0.551611 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_11g0023840 | SBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_11g0023320 | SBH | 1.731517 | 4.641118 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_11g0023060 | SBH | 0.069038 | 0.0 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_11g0023300 | SBH | 0.000000 | 0.393410 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_11G023320 | SBH | 0.129080 | 0.795419 | 0.599774 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_11g0023750 | SBH | 0.152510 | 4.768662 | 0.673288 |
