Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLima_11g0023740 | OGI:11077650 | 16/16 | LIMA | Os127564RS1 | Gramene(+IsoSeq) | Chr11:29444947-29449087 | ||||||||
| Gene Symbol | YR2, YR6, YR9, YR10, YR21, YR23, - | ||||||||||
| DNA seq | gagcaaacttccagcttgtgcaagatgaatgctattgagccttgttacgtgcagacttatgtcttctcatgctgaattatcactccataaggtaagatttgcatgcagtatacttgagtaaaacccctcaacttgttgccggttacttctttctcctcgtttacctttaacccaagaaactcactgaattttttttttcctttctgctgacctcccccctgttcttctcctgtcacctttggtgactcctgtacagtgcttacctctctaaatacaaaaccagctccgctggcttaggtttcaagaaatgtaacccccattattccagttctttagcttcagtatgctaacttgctcaatacacatggcaaaacaacctattaaaaaacataccgaaatgtaaccccattattccagtcctttactgagatgtgcccctctgttgcaaagatactctgaaactgattgaactttgtccattttcagatcgtgtaattgtcataaataatttgattggaaatttttggtgcatcaccatcaacgagtttctctatggcaacaatactgggttctttggttggatcatgcgtaaacaagttgcaagggatcattacagaggaggcaatactaattttaggtgtaaaagaagaactcagaaaactgcaggaaagaatgaaacaatacagtgctttatcaatgatgctgagcgaagggcatggaagactcagcggtacacaattggatttctcggctaaaagatgttatgtatgatgccgatgacattatcgatttggctagttttgaaggaaacaagctattaaatggccattcttcttcacctagaaaaacaactgcatgcagtgcgctttcacCTctctcttgcttttccaatattcgggttcgccatgagattggtgataaaattagaatgctgaaccgaaaattagctgaaatagaaaaggataaaatatttgcaacacttgagaatacacaaccagctgataaaggttcaacatcagaactgagaaaaacatctcacattgttgaacccaaccttgtggggaaagaaatagtgcatgcttgtagaaagttggtgagcctggtggtttcacacaaggaagacaaggcctacaagctcgctattgttggaacagggggagttggcaagacaacactagctcagaaaatattcaatgataaaaaattagaagggagatttgaccatcgtgcctgggtttgtgtctccaaggagtattctatggtttcccttttgacacaagttcttagtaacatgaaaattcattatgaacaaaatgaatcagttgggaaccttcaaagcaaactcaaagcaggcattgcagacaagagttttttccttgtgttggatgatgtatggcactataaagcatgggaagatttactaagaactccactaaatgcggcagccacaggaataattctagtaactactcgagatgaaactattactcgtgtaattggggtggaccggactcatagagttgatttgatgtcagccgatgtaggatgggagttactttggaggagcatgaacatcaaagaagagaaacaagtgaaaaatctacgggacacaggtatcgagattgtccgcaaatgtggtggcctacctcttgcaatcagggctattgccaaagtcttagcaagcctgagagatcaaacagagaatgagtggagacagatattggggaaaaatgcctggtccatgagcaaacttcctgatgaattaaatggtgctttatatctgagttatgaagtgctgccgcaccagctgaagcaatgttttctttattgtgcacttttCcctgaagatgcaaacattttctgtggtgatattactaggatgtgggtggctgaaggctttatagatgagcaagaaggccaattactagaagacacagcagagaggtattttcatgagttgatccatcggaacttgctccaaccagatggtttatattttgacaacagctggtgcaagatgcatgatctcttaaggcaacttgcttcttatttgtcaagagaagaatgttttgttggagacccagagtcactagggactaatactatgtgcaaagtgcggcgtatttcagttgtcactgagaaggacatagtggtgttacctagcatggacaaggatcaatataaagtgaggtgttttacaaacttatctgggaagtcagcaagaattgataattcacttttcaagagacttgtatgtcttcgcattttggatttgtctgactcacttgtacatgacatcccaggtgcgattggaaatttgatttatctgcggttgctcgatcttaacaggacaaatatatgttctctcccagagaccattggttccctgcaaaaccttcaaatattgaacttggagagctgtaaatctctgcaccgccttcctttggcaaccactcagctctgcaatttgaggcgacttggtcttgatggtacaccaataaaccaggtcccaaaagggataggaataatgaaatttctcaatgatttagaaggatttcctatcggtggtggaagtgacaatacaaaaatgcaagatggctggaatttggaagagttggctcatctttcacagttgaggtgtcttgatatgataaaattggagagagctactccttgcagcagtagagacccatttctactaacagagaaaaagcatcttaaaagtctacatctatgctgcactgaacagacagatgaagcatattcagaggaaggcattagcaatgtcgagaagatctttgagcagctaagtcctccatgcaatttagaagatcttatgattgtattattctttgggcgaaggttccccacctggcttagtacttCccttttatcttcactggcatatttggaactcatagattgcaaatcctgtgtgcaccttccaccaatcggacagctaccaaacttgaaatacctaagaattaagggagcaagtgcaatcaccaagattggacccgaatttgttggctgCtgggagggtaatctcagatccacagaggcagttgctttccccaagcttgaagtgctgatcatcaaggatatgcccaactgggaggagtggtcctttgttgaagaagaagaagtgcaggaggaggaagcagctgcagcagccaaggaagggggagaggatggaactgctgcttcgaagcaaaagggggaagaagccccgtctccaactccaaggccgtcatggctgctgccttgtttgacgaggttggatctcgtgggctgccccaagctgagggctctcccaccacagcttggacagcaggccaccaacttgaagaaactctttataagaggcacaagatacttgaagacggtggaagacctcccgttcctctctggttgccttttagttgaaagatgtgaaggcctggagagggtctccaaccttccccaagtgagagacctgcgtgtaacacattgcccaaatttgaggcatgttgaggagttgggcgGTttggagtggctatggctagatgaGggtatgctggagatatctcagctgtgggtccctgggcttcaagagcagcaccgccaactccatggagacgagctcgagatcAacgactggcctcgcacatagaattagatgacataaggtatgtacactgattgattgatttggattttgcaccctaatctgctatgctgttcgcatttgatggccttgttagttctttagttgggcacattgactgttcttttgacttgtaTgttttgctttcttttgttgcataactttctcatgatcaaggtttcagtgacgatgtgttaaacacaaaccaattaggtggccataccctttacttatgtcgtgaccatatggtgtcttgttgacaccctgaatgtgctatgctaaattaatattctatcctacatgtactatgatttgcagcagtttctaaatgaatgcccgaatttgaggcatgtcgaggagttgggtggtttggagcagctatggctgtcaaagaatatgcagaagatctcttcactgtgggtcccaaggcttcaggagcaacaccgccagctccatggagatgagcatgagctggaggtcaccgagtggctctga
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| CDS seq | atggaagactcagcggtacacaattggatttctcggctaaaagatgttatgtatgatgccgatgacattatcgatttggctagttttgaaggaaacaagctattaaatggccattcttcttcacctagaaaaacaactgcatgcagtgcgctttcacCTctctcttgcttttccaatattcgggttcgccatgagattggtgataaaattagaatgctgaaccgaaaattagctgaaatagaaaaggataaaatatttgcaacacttgagaatacacaaccagctgataaaggttcaacatcagaactgagaaaaacatctcacattgttgaacccaaccttgtggggaaagaaatagtgcatgcttgtagaaagttggtgagcctggtggtttcacacaaggaagacaaggcctacaagctcgctattgttggaacagggggagttggcaagacaacactagctcagaaaatattcaatgataaaaaattagaagggagatttgaccatcgtgcctgggtttgtgtctccaaggagtattctatggtttcccttttgacacaagttcttagtaacatgaaaattcattatgaacaaaatgaatcagttgggaaccttcaaagcaaactcaaagcaggcattgcagacaagagttttttccttgtgttggatgatgtatggcactataaagcatgggaagatttactaagaactccactaaatgcggcagccacaggaataattctagtaactactcgagatgaaactattactcgtgtaattggggtggaccggactcatagagttgatttgatgtcagccgatgtaggatgggagttactttggaggagcatgaacatcaaagaagagaaacaagtgaaaaatctacgggacacaggtatcgagattgtccgcaaatgtggtggcctacctcttgcaatcagggctattgccaaagtcttagcaagcctgagagatcaaacagagaatgagtggagacagatattggggaaaaatgcctggtccatgagcaaacttcctgatgaattaaatggtgctttatatctgagttatgaagtgctgccgcaccagctgaagcaatgttttctttattgtgcacttttCcctgaagatgcaaacattttctgtggtgatattactaggatgtgggtggctgaaggctttatagatgagcaagaaggccaattactagaagacacagcagagaggtattttcatgagttgatccatcggaacttgctccaaccagatggtttatattttgacaacagctggtgcaagatgcatgatctcttaaggcaacttgcttcttatttgtcaagagaagaatgttttgttggagacccagagtcactagggactaatactatgtgcaaagtgcggcgtatttcagttgtcactgagaaggacatagtggtgttacctagcatggacaaggatcaatataaagtgaggtgttttacaaacttatctgggaagtcagcaagaattgataattcacttttcaagagacttgtatgtcttcgcattttggatttgtctgactcacttgtacatgacatcccaggtgcgattggaaatttgatttatctgcggttgctcgatcttaacaggacaaatatatgttctctcccagagaccattggttccctgcaaaaccttcaaatattgaacttggagagctgtaaatctctgcaccgccttcctttggcaaccactcagctctgcaatttgaggcgacttggtcttgatggtacaccaataaaccaggtcccaaaagggataggaataatgaaatttctcaatgatttagaaggatttcctatcggtggtggaagtgacaatacaaaaatgcaagatggctggaatttggaagagttggctcatctttcacagttgaggtgtcttgatatgataaaattggagagagctactccttgcagcagtagagacccatttctactaacagagaaaaagcatcttaaaagtctacatctatgctgcactgaacagacagatgaagcatattcagaggaaggcattagcaatgtcgagaagatctttgagcagctaagtcctccatgcaatttagaagatcttatgattgtattattctttgggcgaaggttccccacctggcttagtacttCccttttatcttcactggcatatttggaactcatagattgcaaatcctgtgtgcaccttccaccaatcggacagctaccaaacttgaaatacctaagaattaagggagcaagtgcaatcaccaagattggacccgaatttgttggctgCtgggagggtaatctcagatccacagaggcagttgctttccccaagcttgaagtgctgatcatcaaggatatgcccaactgggaggagtggtcctttgttgaagaagaagaagtgcaggaggaggaagcagctgcagcagccaaggaagggggagaggatggaactgctgcttcgaagcaaaagggggaagaagccccgtctccaactccaaggccgtcatggctgctgccttgtttgacgaggttggatctcgtgggctgccccaagctgagggctctcccaccacagcttggacagcaggccaccaacttgaagaaactctttataagaggcacaagatacttgaagacggtggaagacctcccgttcctctctggttgccttttagttgaaagatgtgaaggcctggagagggtctccaaccttccccaagtgagagacctgcgtgtaacacattgcccaaatttgaggcatgttgaggagttgggcgGTttggagtggctatggctagatgaGggtatgctggagatatctcagctgtggcagtttctaaatgaatgcccgaatttgaggcatgtcgaggagttgggtggtttggagcagctatggctgtcaaagaatatgcagaagatctcttcactgtgggtcccaaggcttcaggagcaacaccgccagctccatggagatgagcatgagctggaggtcaccgagtggctctga
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| Protein seq | MEDSAVHNWISRLKDVMYDADDIIDLASFEGNKLLNGHSSSPRKTTACSALSPLSCFSNIRVRHEIGDKIRMLNRKLAEIEKDKIFATLENTQPADKGSTSELRKTSHIVEPNLVGKEIVHACRKLVSLVVSHKEDKAYKLAIVGTGGVGKTTLAQKIFNDKKLEGRFDHRAWVCVSKEYSMVSLLTQVLSNMKIHYEQNESVGNLQSKLKAGIADKSFFLVLDDVWHYKAWEDLLRTPLNAAATGIILVTTRDETITRVIGVDRTHRVDLMSADVGWELLWRSMNIKEEKQVKNLRDTGIEIVRKCGGLPLAIRAIAKVLASLRDQTENEWRQILGKNAWSMSKLPDELNGALYLSYEVLPHQLKQCFLYCALFPEDANIFCGDITRMWVAEGFIDEQEGQLLEDTAERYFHELIHRNLLQPDGLYFDNSWCKMHDLLRQLASYLSREECFVGDPESLGTNTMCKVRRISVVTEKDIVVLPSMDKDQYKVRCFTNLSGKSARIDNSLFKRLVCLRILDLSDSLVHDIPGAIGNLIYLRLLDLNRTNICSLPETIGSLQNLQILNLESCKSLHRLPLATTQLCNLRRLGLDGTPINQVPKGIGIMKFLNDLEGFPIGGGSDNTKMQDGWNLEELAHLSQLRCLDMIKLERATPCSSRDPFLLTEKKHLKSLHLCCTEQTDEAYSEEGISNVEKIFEQLSPPCNLEDLMIVLFFGRRFPTWLSTSLLSSLAYLELIDCKSCVHLPPIGQLPNLKYLRIKGASAITKIGPEFVGCWEGNLRSTEAVAFPKLEVLIIKDMPNWEEWSFVEEEEVQEEEAAAAAKEGGEDGTAASKQKGEEAPSPTPRPSWLLPCLTRLDLVGCPKLRALPPQLGQQATNLKKLFIRGTRYLKTVEDLPFLSGCLLVERCEGLERVSNLPQVRDLRVTHCPNLRHVEELGGLEWLWLDEGMLEISQLWQFLNECPNLRHVEELGGLEQLWLSKNMQKISSLWVPRLQEQHRQLHGDEHELEVTEWL |
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| Function | Putative disease resistance protein RGA4 [UniProtKB/Swiss-Prot:Q7XA39] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLima_11g0023740 | OsLima_11g0023740.01 | Chr11 | 29444947 | 29449087 | + | NAM | ||
| CDS seq | atggaagactcagcggtacacaattggatttctcggctaaaagatgttatgtatgatgccgatgacattatcgatttggctagttttgaaggaaacaagctattaaatggccattcttcttcacctagaaaaacaactgcatgcagtgcgctttcacCTctctcttgcttttccaatattcgggttcgccatgagattggtgataaaattagaatgctgaaccgaaaattagctgaaatagaaaaggataaaatatttgcaacacttgagaatacacaaccagctgataaaggttcaacatcagaactgagaaaaacatctcacattgttgaacccaaccttgtggggaaagaaatagtgcatgcttgtagaaagttggtgagcctggtggtttcacacaaggaagacaaggcctacaagctcgctattgttggaacagggggagttggcaagacaacactagctcagaaaatattcaatgataaaaaattagaagggagatttgaccatcgtgcctgggtttgtgtctccaaggagtattctatggtttcccttttgacacaagttcttagtaacatgaaaattcattatgaacaaaatgaatcagttgggaaccttcaaagcaaactcaaagcaggcattgcagacaagagttttttccttgtgttggatgatgtatggcactataaagcatgggaagatttactaagaactccactaaatgcggcagccacaggaataattctagtaactactcgagatgaaactattactcgtgtaattggggtggaccggactcatagagttgatttgatgtcagccgatgtaggatgggagttactttggaggagcatgaacatcaaagaagagaaacaagtgaaaaatctacgggacacaggtatcgagattgtccgcaaatgtggtggcctacctcttgcaatcagggctattgccaaagtcttagcaagcctgagagatcaaacagagaatgagtggagacagatattggggaaaaatgcctggtccatgagcaaacttcctgatgaattaaatggtgctttatatctgagttatgaagtgctgccgcaccagctgaagcaatgttttctttattgtgcacttttCcctgaagatgcaaacattttctgtggtgatattactaggatgtgggtggctgaaggctttatagatgagcaagaaggccaattactagaagacacagcagagaggtattttcatgagttgatccatcggaacttgctccaaccagatggtttatattttgacaacagctggtgcaagatgcatgatctcttaaggcaacttgcttcttatttgtcaagagaagaatgttttgttggagacccagagtcactagggactaatactatgtgcaaagtgcggcgtatttcagttgtcactgagaaggacatagtggtgttacctagcatggacaaggatcaatataaagtgaggtgttttacaaacttatctgggaagtcagcaagaattgataattcacttttcaagagacttgtatgtcttcgcattttggatttgtctgactcacttgtacatgacatcccaggtgcgattggaaatttgatttatctgcggttgctcgatcttaacaggacaaatatatgttctctcccagagaccattggttccctgcaaaaccttcaaatattgaacttggagagctgtaaatctctgcaccgccttcctttggcaaccactcagctctgcaatttgaggcgacttggtcttgatggtacaccaataaaccaggtcccaaaagggataggaataatgaaatttctcaatgatttagaaggatttcctatcggtggtggaagtgacaatacaaaaatgcaagatggctggaatttggaagagttggctcatctttcacagttgaggtgtcttgatatgataaaattggagagagctactccttgcagcagtagagacccatttctactaacagagaaaaagcatcttaaaagtctacatctatgctgcactgaacagacagatgaagcatattcagaggaaggcattagcaatgtcgagaagatctttgagcagctaagtcctccatgcaatttagaagatcttatgattgtattattctttgggcgaaggttccccacctggcttagtacttCccttttatcttcactggcatatttggaactcatagattgcaaatcctgtgtgcaccttccaccaatcggacagctaccaaacttgaaatacctaagaattaagggagcaagtgcaatcaccaagattggacccgaatttgttggctgCtgggagggtaatctcagatccacagaggcagttgctttccccaagcttgaagtgctgatcatcaaggatatgcccaactgggaggagtggtcctttgttgaagaagaagaagtgcaggaggaggaagcagctgcagcagccaaggaagggggagaggatggaactgctgcttcgaagcaaaagggggaagaagccccgtctccaactccaaggccgtcatggctgctgccttgtttgacgaggttggatctcgtgggctgccccaagctgagggctctcccaccacagcttggacagcaggccaccaacttgaagaaactctttataagaggcacaagatacttgaagacggtggaagacctcccgttcctctctggttgccttttagttgaaagatgtgaaggcctggagagggtctccaaccttccccaagtgagagacctgcgtgtaacacattgcccaaatttgaggcatgttgaggagttgggcgGTttggagtggctatggctagatgaGggtatgctggagatatctcagctgtggcagtttctaaatgaatgcccgaatttgaggcatgtcgaggagttgggtggtttggagcagctatggctgtcaaagaatatgcagaagatctcttcactgtgggtcccaaggcttcaggagcaacaccgccagctccatggagatgagcatgagctggaggtcaccgagtggctctga
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| Protein seq | MEDSAVHNWISRLKDVMYDADDIIDLASFEGNKLLNGHSSSPRKTTACSALSPLSCFSNIRVRHEIGDKIRMLNRKLAEIEKDKIFATLENTQPADKGSTSELRKTSHIVEPNLVGKEIVHACRKLVSLVVSHKEDKAYKLAIVGTGGVGKTTLAQKIFNDKKLEGRFDHRAWVCVSKEYSMVSLLTQVLSNMKIHYEQNESVGNLQSKLKAGIADKSFFLVLDDVWHYKAWEDLLRTPLNAAATGIILVTTRDETITRVIGVDRTHRVDLMSADVGWELLWRSMNIKEEKQVKNLRDTGIEIVRKCGGLPLAIRAIAKVLASLRDQTENEWRQILGKNAWSMSKLPDELNGALYLSYEVLPHQLKQCFLYCALFPEDANIFCGDITRMWVAEGFIDEQEGQLLEDTAERYFHELIHRNLLQPDGLYFDNSWCKMHDLLRQLASYLSREECFVGDPESLGTNTMCKVRRISVVTEKDIVVLPSMDKDQYKVRCFTNLSGKSARIDNSLFKRLVCLRILDLSDSLVHDIPGAIGNLIYLRLLDLNRTNICSLPETIGSLQNLQILNLESCKSLHRLPLATTQLCNLRRLGLDGTPINQVPKGIGIMKFLNDLEGFPIGGGSDNTKMQDGWNLEELAHLSQLRCLDMIKLERATPCSSRDPFLLTEKKHLKSLHLCCTEQTDEAYSEEGISNVEKIFEQLSPPCNLEDLMIVLFFGRRFPTWLSTSLLSSLAYLELIDCKSCVHLPPIGQLPNLKYLRIKGASAITKIGPEFVGCWEGNLRSTEAVAFPKLEVLIIKDMPNWEEWSFVEEEEVQEEEAAAAAKEGGEDGTAASKQKGEEAPSPTPRPSWLLPCLTRLDLVGCPKLRALPPQLGQQATNLKKLFIRGTRYLKTVEDLPFLSGCLLVERCEGLERVSNLPQVRDLRVTHCPNLRHVEELGGLEWLWLDEGMLEISQLWQFLNECPNLRHVEELGGLEQLWLSKNMQKISSLWVPRLQEQHRQLHGDEHELEVTEWL
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.024663 | 0.551611 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_11g0673600 | SBH | 0.222929 | 0.046989 | 0.384975 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os11g44960 | RBH | 0.100980 | 0.000000 | 0.000000 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os11g0673600 | SBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_11g0023750 | SBH | 0.000000 | 86.644440 | 2.468501 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_11g0023490 | SBH | 0.379576 | 4.742776 | 2.006162 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_11g0023140 | SBH | 2.762746 | 13.436707 | 26.538805 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_11g0023140 | RBH | 0.000000 | 0.000000 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_11g0023130 | RBH | 0.0 | 2.865955 | 0.108137 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_11G0420800 | SBH | 0.2352695 | 1.2420205 | 0 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_11g0023970 | SBH | 0.036124 | 0.004755 | 0.026227 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_11G0429700 | SBH | 0.012926 | 1.070222 | 0.2560875 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_11g0023800 | SBH | 0.366803 | 0.284244 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_11g0023790 | SBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_11g0023300 | SBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_11g0022900 | SBH | 0.169465 | 0.0 | 0.076431 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_11g0023130 | SBH | 0.000000 | 0.687507 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_11G023300 | SBH | 0.434635 | 0.913598 | 2.277780 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_11g0023730 | SBH | 1.486182 | 20.188963 | 5.723283 |
