Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsKeNa_11g0023760 | OGI:11077650 | 16/16 | KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | Chr11:28771573-28774620 | ||||||||
| Gene Symbol | DRP-RP13, OsDRP-RP13, - | ||||||||||
| DNA seq | atggcaaccatattagattctttggtcggatcatgtgccaataagttgaaagagattattactgaagaggtgatacttattctagggatacaagaagagctcgcagagttgcagcggaagactgaactcatacattgttgtattagtgatgctgaggcaaggaggatggaagagtcaacagttgacaattggcttggtcagctaagagaagttctatatgatgttgatgatattatcgacttggctagatttaagggaagcattctactaactgatcatccttcatcatcatcatcaaggaagtcaattgcttgcactggcctgtcaatttccacttgcttttctaatgttcaagcacgtcatgaggttgctgtgaaaattagaagtctcaacaggaagatagaaaacatttcaaaggacagagTAtttttgacactcaagagtacggttcctactggaagcagttcagtattgagaatgagaaaaagttcccacctgcttgagcccaacattgttggcaaggagatcatacatgcctgcagaaaaatggtagatttagtgcttgaacataaggggagaaaacattataagcttgcaattgttgggactgggggagttggtaagacaacattagctcagaaaatatacaatgatagaaaaataaaaggaagtttcaacaaaaaggcatgggtatgtgtttccaaagtgtactctgaagcttctcttttgagagaacttcttcgaattatggaagttcatcatgaccaagatgaatcaatcggagagctccagagcaagcttgaaatagcaattaaggagacaagttttttccttgtgttggatgacatgtggcaatctgatgcatggacaaatttattaagaattccaatgcatgctgcagcaacgggagcaattctcataacaactagaaataatattgtttccttagaaattggagtggaccatacttatcgagttgatttgatgccaatcgatgtaggatgggagctactttggaagagcatgaatatcagtgaaagcatagaattgcaaactctccaggatgttgggattgagattgttcgcaaatgtggttgccttcctcttgcaatcaaggttattgctagagtgctagcgagtaaagaacaaacagagaacgaatggaaaaaaatattgagcaaaaatgcttggttcatgaacaagcttcctaatgatttgagaggtgctttatatctgagttacgatgagttaccacgtcatttgaagcaatgctttctttattgtagtttatatcctgaagatgcaaacatttaccgtgatgatcttacaaggatgtggatcgctgaaggctttatagaggaccatggaggtcaactactagaagaaacagcagacgagtattactatgagctgatccaccggaaccttcttcaaccagatggtttatattatgaccacagcagctgcaaaatgcatgatcttttaaggcagcttgcttgttatttgtcaagggaagaatgttttgttggaaacccagaatcattggtaggtaacactgtgtctaaacttcgacgtgtttcagtcgtcacagataagaacatggtaatgttacctagtatggacaaggtgcaatataaagtacggacttggaaaacttcttatgagaaaaaactcagagttgataactcatatttcaagagatttccttaccttcgcgttttagatttgactgattcatttgtaccaagcatcccaagttgcatcgggaatttgatccatctacgtttgcttgatcttgatggtaccaatgtatcttgtcttccagagtccattagcaacctaaaaaatcttcaaatattgaacttggagaggtgtgttgctttgcacagtcttccttcagcgatcacccaactgtgcaatttaaggcgccttggcctcaagtattcaccgatagatcaagttccaaaagggattggcaaattggaatttctcaatgatgtagaagggtttccagtctatggtggcagtactaatactAaaatgcaagatggatggaacttggaagagttggctcatctttaccagctaaggcggcttcaaatgattaaattggaaagaacagcttaccgcactacttacccattgttaacagacaaagggtttctgaaatttttgtatctttggtgtactgaacgtacagatgaaccatacacagaaaaagatttcagaaatattgaaaagatctttgagcagctaattccgccgtgcaacctggaagatcttgctattgttaaattcttcggtcgccagtatcccttctagatagattctacccatttggcttatgtaaaatccttgcacctcttcaagtgcaaattctgtatgcaccttccaccagttgggcagctacccaacttgaaatatctaaaaattgagggagcagctgcagttaccatgattggacccgaatttgctggctgcagggtgagtaatcttggacgaacagttgctttccccaagcttgaagagttgctcatacgagatatgcccaactgggaagagtggttctttattgatgaagcaacgtcaattgctaaggaaagggttgatgatggagattctgcaatgccaaaagaggaagccttacctccagggatgcagctactgtcacggttgaggaggctggaactttctggctgcccaaagctgaaagctcttccacggcagcttgcacagattaatagtctgaaggagatcgaactaagatgggcaagcagcctgaaagtggtggagaactttcccctcatctctgagatgcttttgattgcgacatgtcaagccctggagaaagtctctaaccttcctcaagtgcgagagctgcgcgtgcaagattgtccaaacttGAgacgtgttgaggagttGggcactttggagcagctgtggctttatgaggatatgcatgaggtctctacattttgggtgtctgggcttcaacagcagtgccgacaacatcatggagaggatcttgatgtctacaattggacatag
More
|
||||||||||
| CDS seq | atggcaaccatattagattctttggtcggatcatgtgccaataagttgaaagagattattactgaagaggtgatacttattctagggatacaagaagagctcgcagagttgcagcggaagactgaactcatacattgttgtattagtgatgctgaggcaaggaggatggaagagtcaacagttgacaattggcttggtcagctaagagaagttctatatgatgttgatgatattatcgacttggctagatttaagggaagcattctactaactgatcatccttcatcatcatcatcaaggaagtcaattgcttgcactggcctgtcaatttccacttgcttttctaatgttcaagcacgtcatgaggttgctgtgaaaattagaagtctcaacaggaagatagaaaacatttcaaaggacagagTAtttttgacactcaagagtacggttcctactggaagcagttcagtattgagaatgagaaaaagttcccacctgcttgagcccaacattgttggcaaggagatcatacatgcctgcagaaaaatggtagatttagtgcttgaacataaggggagaaaacattataagcttgcaattgttgggactgggggagttggtaagacaacattagctcagaaaatatacaatgatagaaaaataaaaggaagtttcaacaaaaaggcatgggtatgtgtttccaaagtgtactctgaagcttctcttttgagagaacttcttcgaattatggaagttcatcatgaccaagatgaatcaatcggagagctccagagcaagcttgaaatagcaattaaggagacaagttttttccttgtgttggatgacatgtggcaatctgatgcatggacaaatttattaagaattccaatgcatgctgcagcaacgggagcaattctcataacaactagaaataatattgtttccttagaaattggagtggaccatacttatcgagttgatttgatgccaatcgatgtaggatgggagctactttggaagagcatgaatatcagtgaaagcatagaattgcaaactctccaggatgttgggattgagattgttcgcaaatgtggttgccttcctcttgcaatcaaggttattgctagagtgctagcgagtaaagaacaaacagagaacgaatggaaaaaaatattgagcaaaaatgcttggttcatgaacaagcttcctaatgatttgagaggtgctttatatctgagttacgatgagttaccacgtcatttgaagcaatgctttctttattgtagtttatatcctgaagatgcaaacatttaccgtgatgatcttacaaggatgtggatcgctgaaggctttatagaggaccatggaggtcaactactagaagaaacagcagacgagtattactatgagctgatccaccggaaccttcttcaaccagatggtttatattatgaccacagcagctgcaaaatgcatgatcttttaaggcagcttgcttgttatttgtcaagggaagaatgttttgttggaaacccagaatcattggtaggtaacactgtgtctaaacttcgacgtgtttcagtcgtcacagataagaacatggtaatgttacctagtatggacaaggtgcaatataaagtacggacttggaaaacttcttatgagaaaaaactcagagttgataactcatatttcaagagatttccttaccttcgcgttttagatttgactgattcatttgtaccaagcatcccaagttgcatcgggaatttgatccatctacgtttgcttgatcttgatggtaccaatgtatcttgtcttccagagtccattagcaacctaaaaaatcttcaaatattgaacttggagaggtgtgttgctttgcacagtcttccttcagcgatcacccaactgtgcaatttaaggcgccttggcctcaagtattcaccgatagatcaagttccaaaagggattggcaaattggaatttctcaatgatgtagaagggtttccagtctatggtggcagtactaatactAaaatgcaagatggatggaacttggaagagttggctcatctttaccagctaaggcggcttcaaatgattaaattggaaagaacagcttaccgcactacttacccattgttaacagacaaagggtttctgaaatttttgtatctttggtgtactgaacgtacagatgaaccatacacagaaaaagatttcagaaatattgaaaagatctttgagcagctaattccgccgtgcaacctggaagatcttgctattgttaaattcttcggtcgccaggtgagtaatcttggacgaacagttgctttccccaagcttgaagagttgctcatacgagatatgcccaactgggaagagtggttctttattgatgaagcaacgtcaattgctaaggaaagggttgatgatggagattctgcaatgccaaaagaggaagccttacctccagggatgcagctactgtcacggttgaggaggctggaactttctggctgcccaaagctgaaagctcttccacggcagcttgcacagattaatagtctgaaggagatcgaactaagatgggcaagcagcctgaaagtggtggagaactttcccctcatctctgagatgcttttgattgcgacatgtcaagccctggagaaagtctctaaccttcctcaagtgcgagagctgcgcgtgcaagattgtccaaacttGAgacgtgttgaggagttGggcactttggagcagctgtggctttatgaggatatgcatgaggtctctacattttgggtgtctgggcttcaacagcagtgccgacaacatcatggagaggatcttgatgtctacaattggacatag
More
|
||||||||||
| Protein seq | MATILDSLVGSCANKLKEIITEEVILILGIQEELAELQRKTELIHCCISDAEARRMEESTVDNWLGQLREVLYDVDDIIDLARFKGSILLTDHPSSSSSRKSIACTGLSISTCFSNVQARHEVAVKIRSLNRKIENISKDRVFLTLKSTVPTGSSSVLRMRKSSHLLEPNIVGKEIIHACRKMVDLVLEHKGRKHYKLAIVGTGGVGKTTLAQKIYNDRKIKGSFNKKAWVCVSKVYSEASLLRELLRIMEVHHDQDESIGELQSKLEIAIKETSFFLVLDDMWQSDAWTNLLRIPMHAAATGAILITTRNNIVSLEIGVDHTYRVDLMPIDVGWELLWKSMNISESIELQTLQDVGIEIVRKCGCLPLAIKVIARVLASKEQTENEWKKILSKNAWFMNKLPNDLRGALYLSYDELPRHLKQCFLYCSLYPEDANIYRDDLTRMWIAEGFIEDHGGQLLEETADEYYYELIHRNLLQPDGLYYDHSSCKMHDLLRQLACYLSREECFVGNPESLVGNTVSKLRRVSVVTDKNMVMLPSMDKVQYKVRTWKTSYEKKLRVDNSYFKRFPYLRVLDLTDSFVPSIPSCIGNLIHLRLLDLDGTNVSCLPESISNLKNLQILNLERCVALHSLPSAITQLCNLRRLGLKYSPIDQVPKGIGKLEFLNDVEGFPVYGGSTNTKMQDGWNLEELAHLYQLRRLQMIKLERTAYRTTYPLLTDKGFLKFLYLWCTERTDEPYTEKDFRNIEKIFEQLIPPCNLEDLAIVKFFGRQVSNLGRTVAFPKLEELLIRDMPNWEEWFFIDEATSIAKERVDDGDSAMPKEEALPPGMQLLSRLRRLELSGCPKLKALPRQLAQINSLKEIELRWASSLKVVENFPLISEMLLIATCQALEKVSNLPQVRELRVQDCPNLRRVEELGTLEQLWLYEDMHEVSTFWVSGLQQQCRQHHGEDLDVYNWT |
||||||||||
| Function | Putative disease resistance protein RGA3 [UniProtKB/Swiss-Prot:Q7XA40] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsKeNa_11g0023760 | OsKeNa_11g0023760.01 | Chr11 | 28771573 | 28774620 | + | NAM | ||
| CDS seq | atggcaaccatattagattctttggtcggatcatgtgccaataagttgaaagagattattactgaagaggtgatacttattctagggatacaagaagagctcgcagagttgcagcggaagactgaactcatacattgttgtattagtgatgctgaggcaaggaggatggaagagtcaacagttgacaattggcttggtcagctaagagaagttctatatgatgttgatgatattatcgacttggctagatttaagggaagcattctactaactgatcatccttcatcatcatcatcaaggaagtcaattgcttgcactggcctgtcaatttccacttgcttttctaatgttcaagcacgtcatgaggttgctgtgaaaattagaagtctcaacaggaagatagaaaacatttcaaaggacagagTAtttttgacactcaagagtacggttcctactggaagcagttcagtattgagaatgagaaaaagttcccacctgcttgagcccaacattgttggcaaggagatcatacatgcctgcagaaaaatggtagatttagtgcttgaacataaggggagaaaacattataagcttgcaattgttgggactgggggagttggtaagacaacattagctcagaaaatatacaatgatagaaaaataaaaggaagtttcaacaaaaaggcatgggtatgtgtttccaaagtgtactctgaagcttctcttttgagagaacttcttcgaattatggaagttcatcatgaccaagatgaatcaatcggagagctccagagcaagcttgaaatagcaattaaggagacaagttttttccttgtgttggatgacatgtggcaatctgatgcatggacaaatttattaagaattccaatgcatgctgcagcaacgggagcaattctcataacaactagaaataatattgtttccttagaaattggagtggaccatacttatcgagttgatttgatgccaatcgatgtaggatgggagctactttggaagagcatgaatatcagtgaaagcatagaattgcaaactctccaggatgttgggattgagattgttcgcaaatgtggttgccttcctcttgcaatcaaggttattgctagagtgctagcgagtaaagaacaaacagagaacgaatggaaaaaaatattgagcaaaaatgcttggttcatgaacaagcttcctaatgatttgagaggtgctttatatctgagttacgatgagttaccacgtcatttgaagcaatgctttctttattgtagtttatatcctgaagatgcaaacatttaccgtgatgatcttacaaggatgtggatcgctgaaggctttatagaggaccatggaggtcaactactagaagaaacagcagacgagtattactatgagctgatccaccggaaccttcttcaaccagatggtttatattatgaccacagcagctgcaaaatgcatgatcttttaaggcagcttgcttgttatttgtcaagggaagaatgttttgttggaaacccagaatcattggtaggtaacactgtgtctaaacttcgacgtgtttcagtcgtcacagataagaacatggtaatgttacctagtatggacaaggtgcaatataaagtacggacttggaaaacttcttatgagaaaaaactcagagttgataactcatatttcaagagatttccttaccttcgcgttttagatttgactgattcatttgtaccaagcatcccaagttgcatcgggaatttgatccatctacgtttgcttgatcttgatggtaccaatgtatcttgtcttccagagtccattagcaacctaaaaaatcttcaaatattgaacttggagaggtgtgttgctttgcacagtcttccttcagcgatcacccaactgtgcaatttaaggcgccttggcctcaagtattcaccgatagatcaagttccaaaagggattggcaaattggaatttctcaatgatgtagaagggtttccagtctatggtggcagtactaatactAaaatgcaagatggatggaacttggaagagttggctcatctttaccagctaaggcggcttcaaatgattaaattggaaagaacagcttaccgcactacttacccattgttaacagacaaagggtttctgaaatttttgtatctttggtgtactgaacgtacagatgaaccatacacagaaaaagatttcagaaatattgaaaagatctttgagcagctaattccgccgtgcaacctggaagatcttgctattgttaaattcttcggtcgccaggtgagtaatcttggacgaacagttgctttccccaagcttgaagagttgctcatacgagatatgcccaactgggaagagtggttctttattgatgaagcaacgtcaattgctaaggaaagggttgatgatggagattctgcaatgccaaaagaggaagccttacctccagggatgcagctactgtcacggttgaggaggctggaactttctggctgcccaaagctgaaagctcttccacggcagcttgcacagattaatagtctgaaggagatcgaactaagatgggcaagcagcctgaaagtggtggagaactttcccctcatctctgagatgcttttgattgcgacatgtcaagccctggagaaagtctctaaccttcctcaagtgcgagagctgcgcgtgcaagattgtccaaacttGAgacgtgttgaggagttGggcactttggagcagctgtggctttatgaggatatgcatgaggtctctacattttgggtgtctgggcttcaacagcagtgccgacaacatcatggagaggatcttgatgtctacaattggacatag
More
|
|||||||
| Protein seq | MATILDSLVGSCANKLKEIITEEVILILGIQEELAELQRKTELIHCCISDAEARRMEESTVDNWLGQLREVLYDVDDIIDLARFKGSILLTDHPSSSSSRKSIACTGLSISTCFSNVQARHEVAVKIRSLNRKIENISKDRVFLTLKSTVPTGSSSVLRMRKSSHLLEPNIVGKEIIHACRKMVDLVLEHKGRKHYKLAIVGTGGVGKTTLAQKIYNDRKIKGSFNKKAWVCVSKVYSEASLLRELLRIMEVHHDQDESIGELQSKLEIAIKETSFFLVLDDMWQSDAWTNLLRIPMHAAATGAILITTRNNIVSLEIGVDHTYRVDLMPIDVGWELLWKSMNISESIELQTLQDVGIEIVRKCGCLPLAIKVIARVLASKEQTENEWKKILSKNAWFMNKLPNDLRGALYLSYDELPRHLKQCFLYCSLYPEDANIYRDDLTRMWIAEGFIEDHGGQLLEETADEYYYELIHRNLLQPDGLYYDHSSCKMHDLLRQLACYLSREECFVGNPESLVGNTVSKLRRVSVVTDKNMVMLPSMDKVQYKVRTWKTSYEKKLRVDNSYFKRFPYLRVLDLTDSFVPSIPSCIGNLIHLRLLDLDGTNVSCLPESISNLKNLQILNLERCVALHSLPSAITQLCNLRRLGLKYSPIDQVPKGIGKLEFLNDVEGFPVYGGSTNTKMQDGWNLEELAHLYQLRRLQMIKLERTAYRTTYPLLTDKGFLKFLYLWCTERTDEPYTEKDFRNIEKIFEQLIPPCNLEDLAIVKFFGRQVSNLGRTVAFPKLEELLIRDMPNWEEWFFIDEATSIAKERVDDGDSAMPKEEALPPGMQLLSRLRRLELSGCPKLKALPRQLAQINSLKEIELRWASSLKVVENFPLISEMLLIATCQALEKVSNLPQVRELRVQDCPNLRRVEELGTLEQLWLYEDMHEVSTFWVSGLQQQCRQHHGEDLDVYNWT
More
|
|||||||
| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.000000 | 4.853582 | 0.0 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_11g0676800 | SBH | 0.0 | 0.000000 | 1.008491 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os11g45160 | SBH | 0.0 | 0.000000 | 0.259605 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os11g0676800 | SBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_11g0023810 | SBH | 0.0 | 0.0 | 0.0 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_11g0023530 | RBH | 0.000000 | 2.995102 | 0.126475 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_11g0023400 | SBH | 0.0 | 5.246101 | 0.271530 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_11g0022920 | SBH | 0.080717 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_11g0023650 | RBH | 0.0 | 0.000000 | 0.0 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_11G0442100 | SBH | 0.0366395 | 3.949619 | 0.2105595 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_11g0023990 | SBH | 0.0 | 0.110572 | 0.353205 |
| Zhenshan 97 | ZS97RS3 | HZAU | NA | NA | NA | NA | NA |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_11g0023740 | SBH | 0.024663 | 0.551611 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_11g0023840 | SBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_11g0023320 | SBH | 1.731517 | 4.641118 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_11g0023060 | SBH | 0.069038 | 0.0 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_11g0023070 | SBH | 0.000000 | 0.094757 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_11G023320 | SBH | 0.129080 | 0.795419 | 0.599774 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_11g0023750 | RBH | 0.152510 | 4.768662 | 0.673288 |
