Basic Info

Gene ID OGI # | Score   Accession | Assembly | Annotation Location Links
OsLaMu_11g0023230 OGI:11077650 | 16/16 LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) Chr11:29395744-29400227
Gene Symbol YR2, YR6, YR9, YR10, YR21, YR23
DNA seq

acttgctcgtcatcttcctcgcaataggcgatcgatttgccggcttgccatggctgcacgcaccaaaggcctcgctctggggtgagtctttctttcaattcctcgcaacatagcatgtgcttgcttggttgttgggtctgatggaaatgtcgtcttgcgatgcagcagacgcgccccatgccgctgctgttcccattgatctaggatcactctggtctttcctttcatgctgagcaagttcgccttctgtacttgagtaaaacccctcaactttgttgccagatatttctttctggttgcccgtttacccaagaagctatagaaaaaggtaacctcattatttcattttttcagattcagtgatccagtatggtcttgtggcaaaacacatgcaaaataacatactagctagatatgtgctcctctcttacaaatatactctactttatgagtcaggctgtgtttagttcagtgcaaagtttggatttttgttgaaattagagatgatgtgactgaaaagttgtgtgtgtatgacatgttgatgtgatggaaaaggactgaagtttggatccaaactttggatctaaacacagcctcagtcagacaataagacaaataattcagttcggtctctagctatgatggtccgtgcatgtcatcgaatgcatttatgcacactcataaagtttgagttgtcagtgttcatactccagtaactgaaaaacatcacagggcaagctataagtcattgcctacaagtacctactagtagtactggtagtaactgaaagctgtgcagctagccttcactggcaagctccaagcagcaacaatctcatatcgatcctctagctccttttttgccaccaaatcaaaggggaaacgttcttgatcatcatcttcctcgccagcggcgatgctgcgcacggctgcacgcaccaattaaggcctcactctgaggtgagtctttcttcctcacgcaccaaccctctgcttgcccacaagctctggttccttgcagtatgagctcctggttccttgcagtatgagctcctgattccttgcaggatgagctcctggttccttgcagctgatggacttggtgagctgatgaacagctgggggtttcaagaaatgtaacccccattattccagttctttagcttcagtatgctaacttgctcaatacacatggcaaaacaacctattaaaaaacataccgaaatgtaaccccattattccagtcctttactgagatgtgcccctctgttgcaaagatactctgaaactgattgaactttgtccattttcagatcgtgtaattgtcataaataatttgattggaaatttttggtgcatcaccatcaacgagtttctctatggcaacaatactgggttctttggttggatcatgcgtaaacaagttgcaagggatcattacagaggaggcaatactaattttaggtgtaaaagatgagcttgaagaactgcagcgaagaacagatctcataagatattctcttcaggatgctgaggcaaggaggatgaaagattctgcagttcaaaaatggcttgaccagctaagagatgttatgtatgatgttgatgatattattgatttggctagatttaaaggaagtgtcctactacctaactatcctatgtcatcgtcaaggaaatctactgcttgcagtggcctttcactttcatcctgcttttctaatatttgtatacgtcatgaagttgctgtaaaaattagaagcctcaacaaaaagatagatagcatttcaaaggatgatgtatttttaaaactcagccgcacacaacataatggaagtggttcagcatggacacatatagaaagctgcagcctagttgaacctaaccttgtgggcaaggaggtcgtacatgcttgcagagaagtggtggatttggtgcttgcacacaaggcaaagaatgtttacaagcttgctattgttggaacagggggagttggcaagacaacactagctcagaaaatattcaatgataaaaaattagaagggagatttgaccatcgtgcctgggtttgtgtctccaaggagtattctatggtttcccttttgacacaagttcttagtaatatgaaaattcattatgaacaaaatgaatcagttgggaaccttcaaagcaaactcaaagcaggcattgcagacaagagttttttccttgtgttggatgatgtatggcactataaagcatgggaagatttactaagaactccactaaatgcggcagccacaggaataattctagtaactactcgagatgaaactattgctcgtgtaataggggtggaccggactcatagagttgatttgatgtcagccgatgtaggatgggagttactttggaggagcatgaacatcaaagaagagaaacaagtgaaaaatctacgggacacaggtatcgagattgtccgcaaatgtggtggcctacctcttgcaatcagggctattgccaaagtcttagcaagcctgcaagatcaaacagagaatgagtggagacagatattggggaaaaatgcctggtccatgagcaaacttcctgatgaattaaatggtgctttatatctgagttatgaagtgctgccgcaccagctgaagcaatgttttctttattgtgcacttttccctgaagatgcaaccattttctgtggtgatcttactaggatgtgggtggctgaaggctttatagatgagcaagaaggccaattactagaagacacagcagagaggtattatcatgagttgatccatcggaacttgctccaaccagatggtttatattttgaccacagctggtgcaagatgcatgatctcttaaggcaacttgcttcttatttgtcaagagaagaatgttttgttggagacccagagtcactagggactaatactatgtgcaaagtacggcgtatttcagttgtcactgagaaggacatagtggtgttacctagcatggacaaggatcaatataaagtgaggtgttttacaaacttatctgggaagtcagcaagaattgataattcacttttcaagagacttgtatgtcttcgcattttggatttgtctgactcacttatacatgacatcccaggtgcgattggaaatttgatttatctgcggttgctcgatcttaacaggacaaatatatgttctctcccagaggccattggctcccttcaaagccttcaaatattgaatttgatggggtgtgaatctttgcgcagacttcctttggcaacaactcaactatgcaatttgaggcggcttggtcttgctggtactccaataaaccaggttccaaaagggataggaagactgaaatttctcaatgatttagaaggatttcctatcggtggtggaaatgacaataccaaaatacaagatggatggaatttggaagagttggctcatctttcacagttgaggtgtcttgatatgataaaattggagagagctactccttgcagcagtagagacccatttctactaacagagaaaaagcatctcaatgttctgaatctacactgcaccgaacagacagatgaagcatattcagaggaaggcattagcaatgttgagaagatctttgagaagctagcacctccacacaacttagaagatcttgttattgggaatttctttggttgtagattccccacctggcttggtactaaccacttgccttctgtgaaatacgttgtcctcatagattgcaaatcttgtgtgcatcttcccccaatcggacagctaccaaacttgaaatacctaaaaattaatggagcaagtgcaatcaccaagattggacccgaatttgttggctgctgggagggtaatctcagatccacagaggcagttgctttccccaagctcgaatggttggtcattggggatatgcccaactgggaggagtggtcctttgttgaagaagaagaagtgcaagaggaggaagcagctgcagcagccaaggaagggggagaggatggaattgctgcttcgaagcaaaagggggaggaagccccgtctccaactccaaggtcgtcatggctgctgccttgtttgacgaggttgacacttgtgggctgccccaagctgagggctctcccaccacagcttggacagcaggccaccaacttgaatgacctccttataagagacacaagatacttgaagacggtggaggacctcccgttcctctctggttggcttttagttcaaagatgtgaaggcctggagaggatctccaaccttccccaagtgagagagctgcgtgcaggtggttgccccaatttgaggcatgttgaggagttgggtggtttggagcagctattgctggatgaaggtatgcaggagatctctcagctgtgggtccctgggcttcaagagcagcaccgccaattccatggagacgagctcgagatcaacgactggcctcgcacatag

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CDS seq

atggcaacaatactgggttctttggttggatcatgcgtaaacaagttgcaagggatcattacagaggaggcaatactaattttaggtgtaaaagatgagcttgaagaactgcagcgaagaacagatctcataagatattctcttcaggatgctgaggcaaggaggatgaaagattctgcagttcaaaaatggcttgaccagctaagagatgttatgtatgatgttgatgatattattgatttggctagatttaaaggaagtgtcctactacctaactatcctatgtcatcgtcaaggaaatctactgcttgcagtggcctttcactttcatcctgcttttctaatatttgtatacgtcatgaagttgctgtaaaaattagaagcctcaacaaaaagatagatagcatttcaaaggatgatgtatttttaaaactcagccgcacacaacataatggaagtggttcagcatggacacatatagaaagctgcagcctagttgaacctaaccttgtgggcaaggaggtcgtacatgcttgcagagaagtggtggatttggtgcttgcacacaaggcaaagaatgtttacaagcttgctattgttggaacagggggagttggcaagacaacactagctcagaaaatattcaatgataaaaaattagaagggagatttgaccatcgtgcctgggtttgtgtctccaaggagtattctatggtttcccttttgacacaagttcttagtaatatgaaaattcattatgaacaaaatgaatcagttgggaaccttcaaagcaaactcaaagcaggcattgcagacaagagttttttccttgtgttggatgatgtatggcactataaagcatgggaagatttactaagaactccactaaatgcggcagccacaggaataattctagtaactactcgagatgaaactattgctcgtgtaataggggtggaccggactcatagagttgatttgatgtcagccgatgtaggatgggagttactttggaggagcatgaacatcaaagaagagaaacaagtgaaaaatctacgggacacaggtatcgagattgtccgcaaatgtggtggcctacctcttgcaatcagggctattgccaaagtcttagcaagcctgcaagatcaaacagagaatgagtggagacagatattggggaaaaatgcctggtccatgagcaaacttcctgatgaattaaatggtgctttatatctgagttatgaagtgctgccgcaccagctgaagcaatgttttctttattgtgcacttttccctgaagatgcaaccattttctgtggtgatcttactaggatgtgggtggctgaaggctttatagatgagcaagaaggccaattactagaagacacagcagagaggtattatcatgagttgatccatcggaacttgctccaaccagatggtttatattttgaccacagctggtgcaagatgcatgatctcttaaggcaacttgcttcttatttgtcaagagaagaatgttttgttggagacccagagtcactagggactaatactatgtgcaaagtacggcgtatttcagttgtcactgagaaggacatagtggtgttacctagcatggacaaggatcaatataaagtgaggtgttttacaaacttatctgggaagtcagcaagaattgataattcacttttcaagagacttgtatgtcttcgcattttggatttgtctgactcacttatacatgacatcccaggtgcgattggaaatttgatttatctgcggttgctcgatcttaacaggacaaatatatgttctctcccagaggccattggctcccttcaaagccttcaaatattgaatttgatggggtgtgaatctttgcgcagacttcctttggcaacaactcaactatgcaatttgaggcggcttggtcttgctggtactccaataaaccaggttccaaaagggataggaagactgaaatttctcaatgatttagaaggatttcctatcggtggtggaaatgacaataccaaaatacaagatggatggaatttggaagagttggctcatctttcacagttgaggtgtcttgatatgataaaattggagagagctactccttgcagcagtagagacccatttctactaacagagaaaaagcatctcaatgttctgaatctacactgcaccgaacagacagatgaagcatattcagaggaaggcattagcaatgttgagaagatctttgagaagctagcacctccacacaacttagaagatcttgttattgggaatttctttggttgtagattccccacctggcttggtactaaccacttgccttctgtgaaatacgttgtcctcatagattgcaaatcttgtgtgcatcttcccccaatcggacagctaccaaacttgaaatacctaaaaattaatggagcaagtgcaatcaccaagattggacccgaatttgttggctgctgggagggtaatctcagatccacagaggcagttgctttccccaagctcgaatggttggtcattggggatatgcccaactgggaggagtggtcctttgttgaagaagaagaagtgcaagaggaggaagcagctgcagcagccaaggaagggggagaggatggaattgctgcttcgaagcaaaagggggaggaagccccgtctccaactccaaggtcgtcatggctgctgccttgtttgacgaggttgacacttgtgggctgccccaagctgagggctctcccaccacagcttggacagcaggccaccaacttgaatgacctccttataagagacacaagatacttgaagacggtggaggacctcccgttcctctctggttggcttttagttcaaagatgtgaaggcctggagaggatctccaaccttccccaagtgagagagctgcgtgcaggtggttgccccaatttgaggcatgttgaggagttgggtggtttggagcagctattgctggatgaaggtatgcaggagatctctcagctgtgggtccctgggcttcaagagcagcaccgccaattccatggagacgagctcgagatcaacgactggcctcgcacatag

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Protein seq

MATILGSLVGSCVNKLQGIITEEAILILGVKDELEELQRRTDLIRYSLQDAEARRMKDSAVQKWLDQLRDVMYDVDDIIDLARFKGSVLLPNYPMSSSRKSTACSGLSLSSCFSNICIRHEVAVKIRSLNKKIDSISKDDVFLKLSRTQHNGSGSAWTHIESCSLVEPNLVGKEVVHACREVVDLVLAHKAKNVYKLAIVGTGGVGKTTLAQKIFNDKKLEGRFDHRAWVCVSKEYSMVSLLTQVLSNMKIHYEQNESVGNLQSKLKAGIADKSFFLVLDDVWHYKAWEDLLRTPLNAAATGIILVTTRDETIARVIGVDRTHRVDLMSADVGWELLWRSMNIKEEKQVKNLRDTGIEIVRKCGGLPLAIRAIAKVLASLQDQTENEWRQILGKNAWSMSKLPDELNGALYLSYEVLPHQLKQCFLYCALFPEDATIFCGDLTRMWVAEGFIDEQEGQLLEDTAERYYHELIHRNLLQPDGLYFDHSWCKMHDLLRQLASYLSREECFVGDPESLGTNTMCKVRRISVVTEKDIVVLPSMDKDQYKVRCFTNLSGKSARIDNSLFKRLVCLRILDLSDSLIHDIPGAIGNLIYLRLLDLNRTNICSLPEAIGSLQSLQILNLMGCESLRRLPLATTQLCNLRRLGLAGTPINQVPKGIGRLKFLNDLEGFPIGGGNDNTKIQDGWNLEELAHLSQLRCLDMIKLERATPCSSRDPFLLTEKKHLNVLNLHCTEQTDEAYSEEGISNVEKIFEKLAPPHNLEDLVIGNFFGCRFPTWLGTNHLPSVKYVVLIDCKSCVHLPPIGQLPNLKYLKINGASAITKIGPEFVGCWEGNLRSTEAVAFPKLEWLVIGDMPNWEEWSFVEEEEVQEEEAAAAAKEGGEDGIAASKQKGEEAPSPTPRSSWLLPCLTRLTLVGCPKLRALPPQLGQQATNLNDLLIRDTRYLKTVEDLPFLSGWLLVQRCEGLERISNLPQVRELRAGGCPNLRHVEELGGLEQLLLDEGMQEISQLWVPGLQEQHRQFHGDELEINDWPRT

Function Putative disease resistance protein RGA3 [UniProtKB/Swiss-Prot:Q7XA40]

Transcripts

Gene Transcript Chromosome Start End Strand Source
OsLaMu_11g0023230 OsLaMu_11g0023230.01 Chr11 29395744 29400227 + NAM
CDS seq

atggcaacaatactgggttctttggttggatcatgcgtaaacaagttgcaagggatcattacagaggaggcaatactaattttaggtgtaaaagatgagcttgaagaactgcagcgaagaacagatctcataagatattctcttcaggatgctgaggcaaggaggatgaaagattctgcagttcaaaaatggcttgaccagctaagagatgttatgtatgatgttgatgatattattgatttggctagatttaaaggaagtgtcctactacctaactatcctatgtcatcgtcaaggaaatctactgcttgcagtggcctttcactttcatcctgcttttctaatatttgtatacgtcatgaagttgctgtaaaaattagaagcctcaacaaaaagatagatagcatttcaaaggatgatgtatttttaaaactcagccgcacacaacataatggaagtggttcagcatggacacatatagaaagctgcagcctagttgaacctaaccttgtgggcaaggaggtcgtacatgcttgcagagaagtggtggatttggtgcttgcacacaaggcaaagaatgtttacaagcttgctattgttggaacagggggagttggcaagacaacactagctcagaaaatattcaatgataaaaaattagaagggagatttgaccatcgtgcctgggtttgtgtctccaaggagtattctatggtttcccttttgacacaagttcttagtaatatgaaaattcattatgaacaaaatgaatcagttgggaaccttcaaagcaaactcaaagcaggcattgcagacaagagttttttccttgtgttggatgatgtatggcactataaagcatgggaagatttactaagaactccactaaatgcggcagccacaggaataattctagtaactactcgagatgaaactattgctcgtgtaataggggtggaccggactcatagagttgatttgatgtcagccgatgtaggatgggagttactttggaggagcatgaacatcaaagaagagaaacaagtgaaaaatctacgggacacaggtatcgagattgtccgcaaatgtggtggcctacctcttgcaatcagggctattgccaaagtcttagcaagcctgcaagatcaaacagagaatgagtggagacagatattggggaaaaatgcctggtccatgagcaaacttcctgatgaattaaatggtgctttatatctgagttatgaagtgctgccgcaccagctgaagcaatgttttctttattgtgcacttttccctgaagatgcaaccattttctgtggtgatcttactaggatgtgggtggctgaaggctttatagatgagcaagaaggccaattactagaagacacagcagagaggtattatcatgagttgatccatcggaacttgctccaaccagatggtttatattttgaccacagctggtgcaagatgcatgatctcttaaggcaacttgcttcttatttgtcaagagaagaatgttttgttggagacccagagtcactagggactaatactatgtgcaaagtacggcgtatttcagttgtcactgagaaggacatagtggtgttacctagcatggacaaggatcaatataaagtgaggtgttttacaaacttatctgggaagtcagcaagaattgataattcacttttcaagagacttgtatgtcttcgcattttggatttgtctgactcacttatacatgacatcccaggtgcgattggaaatttgatttatctgcggttgctcgatcttaacaggacaaatatatgttctctcccagaggccattggctcccttcaaagccttcaaatattgaatttgatggggtgtgaatctttgcgcagacttcctttggcaacaactcaactatgcaatttgaggcggcttggtcttgctggtactccaataaaccaggttccaaaagggataggaagactgaaatttctcaatgatttagaaggatttcctatcggtggtggaaatgacaataccaaaatacaagatggatggaatttggaagagttggctcatctttcacagttgaggtgtcttgatatgataaaattggagagagctactccttgcagcagtagagacccatttctactaacagagaaaaagcatctcaatgttctgaatctacactgcaccgaacagacagatgaagcatattcagaggaaggcattagcaatgttgagaagatctttgagaagctagcacctccacacaacttagaagatcttgttattgggaatttctttggttgtagattccccacctggcttggtactaaccacttgccttctgtgaaatacgttgtcctcatagattgcaaatcttgtgtgcatcttcccccaatcggacagctaccaaacttgaaatacctaaaaattaatggagcaagtgcaatcaccaagattggacccgaatttgttggctgctgggagggtaatctcagatccacagaggcagttgctttccccaagctcgaatggttggtcattggggatatgcccaactgggaggagtggtcctttgttgaagaagaagaagtgcaagaggaggaagcagctgcagcagccaaggaagggggagaggatggaattgctgcttcgaagcaaaagggggaggaagccccgtctccaactccaaggtcgtcatggctgctgccttgtttgacgaggttgacacttgtgggctgccccaagctgagggctctcccaccacagcttggacagcaggccaccaacttgaatgacctccttataagagacacaagatacttgaagacggtggaggacctcccgttcctctctggttggcttttagttcaaagatgtgaaggcctggagaggatctccaaccttccccaagtgagagagctgcgtgcaggtggttgccccaatttgaggcatgttgaggagttgggtggtttggagcagctattgctggatgaaggtatgcaggagatctctcagctgtgggtccctgggcttcaagagcagcaccgccaattccatggagacgagctcgagatcaacgactggcctcgcacatag

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Protein seq

MATILGSLVGSCVNKLQGIITEEAILILGVKDELEELQRRTDLIRYSLQDAEARRMKDSAVQKWLDQLRDVMYDVDDIIDLARFKGSVLLPNYPMSSSRKSTACSGLSLSSCFSNICIRHEVAVKIRSLNKKIDSISKDDVFLKLSRTQHNGSGSAWTHIESCSLVEPNLVGKEVVHACREVVDLVLAHKAKNVYKLAIVGTGGVGKTTLAQKIFNDKKLEGRFDHRAWVCVSKEYSMVSLLTQVLSNMKIHYEQNESVGNLQSKLKAGIADKSFFLVLDDVWHYKAWEDLLRTPLNAAATGIILVTTRDETIARVIGVDRTHRVDLMSADVGWELLWRSMNIKEEKQVKNLRDTGIEIVRKCGGLPLAIRAIAKVLASLQDQTENEWRQILGKNAWSMSKLPDELNGALYLSYEVLPHQLKQCFLYCALFPEDATIFCGDLTRMWVAEGFIDEQEGQLLEDTAERYYHELIHRNLLQPDGLYFDHSWCKMHDLLRQLASYLSREECFVGDPESLGTNTMCKVRRISVVTEKDIVVLPSMDKDQYKVRCFTNLSGKSARIDNSLFKRLVCLRILDLSDSLIHDIPGAIGNLIYLRLLDLNRTNICSLPEAIGSLQSLQILNLMGCESLRRLPLATTQLCNLRRLGLAGTPINQVPKGIGRLKFLNDLEGFPIGGGNDNTKIQDGWNLEELAHLSQLRCLDMIKLERATPCSSRDPFLLTEKKHLNVLNLHCTEQTDEAYSEEGISNVEKIFEKLAPPHNLEDLVIGNFFGCRFPTWLGTNHLPSVKYVVLIDCKSCVHLPPIGQLPNLKYLKINGASAITKIGPEFVGCWEGNLRSTEAVAFPKLEWLVIGDMPNWEEWSFVEEEEVQEEEAAAAAKEGGEDGIAASKQKGEEAPSPTPRSSWLLPCLTRLTLVGCPKLRALPPQLGQQATNLNDLLIRDTRYLKTVEDLPFLSGWLLVQRCEGLERISNLPQVRELRAGGCPNLRHVEELGGLEQLLLDEGMQEISQLWVPGLQEQHRQFHGDELEINDWPRT

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Event Type Chromosome Start End Strand Alternative mRNAs Total mRNAs Source

Expression

Leaf Root Panicle
FPKM 0.000000 0.000000 None

Homologues

Genome & Annotation Homologs Type Expression(FPKM)
Leaf Root Panicle
Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) OsNip_11g0673600 SBH 0.222929 0.046989 0.384975
Nipponbare | IRGSP 1.0 | MSU LOC_Os11g44960 SBH 0.100980 0.000000 0.000000
Nipponbare | IRGSP 1.0 | RAP-db Os11g0673600 SBH None None None
Azucena | AzucenaRS1 | Gramene(+IsoSeq) OsAzu_11g0023750 SBH 0.000000 86.644440 2.468501
KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) OsKeNa_11g0023530 SBH 0.000000 2.995102 0.126475
CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) OsCMeo_11g0023140 SBH 2.762746 13.436707 26.538805
ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) OsARC_11g0023060 RBH 0.167108 0.067415 None
PR 106 | Os127742RS1 | Gramene(+IsoSeq) OsPr106_11g0023590 SBH 0.850866 0.000000 0.000000
Minghui 63 | MH63RS3 | HZAU OsMH63_11G0420800 RBH 0.2352695 1.2420205 0
IR 64 | OsIR64RS1 | Gramene(+IsoSeq) OsIR64_11g0024070 SBH 0.147908 0.045435 1.028058
Zhenshan 97 | ZS97RS3 | HZAU OsZS97_11G0430000 SBH 0.0419675 0.0645025 0.058287
LIMA | Os127564RS1 | Gramene(+IsoSeq) OsLima_11g0023740 SBH 0.024663 0.551611 None
KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) OsKYG_11g0023790 SBH 0.0 0.0 None
GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) OsGoSa_11g0023280 SBH 2.088418 9.239458 None
LIU XU | Os125827RS1 | Gramene(+IsoSeq) OsLiXu_11g0023080 SBH 0.000000 0.0 0.239393
LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) OsLaMu_11g0023260 RBH 0.907562 3.272615 None
N22 | OsN22RS2 | Gramene(+IsoSeq) OsN22_11G023320 SBH 0.129080 0.795419 0.599774
NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) OsNaBo_11g0023750 SBH 0.152510 4.768662 0.673288
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National Key Laboratory of Crop Genetic Improvement

Huazhong Agricultural University

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