Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLaMu_11g0008000 | OGI:11019820 | 16/16 | LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | Chr11:6907527-6909898 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | tcaacagacggtggtcgggcgccgatcttgcagctcctgcggaacaacagctttacgatcgacatgctgtaaaatggaaatgaacgtcatgttaaaatcctacgagaagaacacacaaccttgcaagttgcaaccagaaaggcagaaacggtgccaagacaaatacagtactaaaggtgcaagataaaaaaaccctgacatttttcatttgcaaagtaaattgcgctctacatcttcctatcatgtagataacaatttactcgatgtatgtagagcgaactaataatcaggatgataatactcgatgatcagggtaataattaatactgaccttgaagaacatggccagcatttagcagctcgatcagtcaaagacggagaggatcttatttatctatttccatcgagtcaccggcccccgtgctctcaggtgttttaggcctctcggtcgcagtatactttatcttacttgtgccaacccttttaaagaacaaaaccttgggtcttttggggtgcttctgagcttcattttcccaagtatttatggtttccatgctgacagctgaatcaagagcaacttcctggagctttgtatggtttttaatattaataccagcaagaccatgaagatgcttacaaagcagctgaagcgaaacaagttttggcaaagctccttcttggatttcaggtacagcatatagaaagcttggcatcaataggcataggaactcaagggatgggaaagtccctatttttatgacaaagcccccaaggtaattttcgaccagtttgagatatttcaagcagagcagcttacccaggtctgaataatgatgcccctccagattagttgatgaaaggcacaactttgtgatgccattcagcgatgtatcaaaattaggcaattggttcagcttgccttgcagcttcaaagagctcacaaaaccatttagttcaactttaatattgtcaccaagttcgggaaatctctccaagccatccccgagatatagtgatagagaacgttcaccaacagctgtgtccatttcagacttaacaaaattttcaatagccttcttgagcttcatccaatcagttgttccttcaccggtggaatcacaccataccttgacctttcttagtcttttcatatgaaccataagttgaggaattatagagtctttgtctataacaaatcctgaaagagtctgcagcttactcttttctgcaatactttctttgtttgagatgatatcatctattacctgcactgcatgaatactcctctttttcctgagcttgacctttccaaacaggtgaactagatggggcagccttatgacttctataggcagtgccactacatttgtcttgcttaattcgagtgtatgtaaacaatgtagcttctcaatcgcctttggaagtttcgtagtagcgcttccgaggctcagatattttagacgactgagattgtccttcatgatgcccttgacaagattatcatcaaaatcattgcattcttttagatctaaggcctgcaacagttcacactcggcaatacaagaaacagctgctcctcctccactcccaaagattgtcagagaacgggcacgaagtttcttcttggccaacctgaggatgttgatatttgtgcacttctggatgaagagatggcgaaaggtacttgggtcatctaactctgacattgtatcaagagacccgatgaagtgatcacagaaggatctgtgcagcatgaactcgcgcatgacagaatgagttctgcatgtcttcactcttgcattgtcgcatgcacccatcggctcaatgatattctggtcgagcaggttctcgaagttttcatgtgcgaccgtttcgtcgctgtctccatattcagactgtatatatccttcagctacccatcgcctgattagactttttctcctgatttggaaaccctttgggaatatactcatgtatagtaggcaggtcttgataagagggccagacaaattgccgtagttacgcataagaacttctcgcaattcatggaatgcagattgtttttccacataagaacctagcagcctgcaaactttttcacagctttttgagcgactgttaccggtcgcactttgcaaaaagttggccacactaacaagagaaagtgggtggccatcacatcttttgataattgatgctgaaatctgctccaagtcacttgaattttccgagctcaatatttcttttagcaaatcatcacaatccttcttctcaagagtacttgtactgtaaatgtaaccaccatcataggtgcacctgttagccaccgggtgactagtcgtcgtcactatcatgttgcagcttgatttcat
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| CDS seq | atgaaatcaagctgcaacatgatagtgacgacgactagtcacccggtggctaacaggtgcacctatgatggtggttacatttacagtacaagtactcttgagaagaaggattgtgatgatttgctaaaagaaatattgagctcggaaaattcaagtgacttggagcagatttcagcatcaattatcaaaagatgtgatggccacccactttctcttgttagtgtggccaactttttgcaaagtgcgaccggtaacagtcgctcaaaaagctgtgaaaaagtttgcaggctgctaggttcttatgtggaaaaacaatctgcattccatgaattgcgagaagttcttatgcgtaactacggcaatttgtctggccctcttatcaagacctgcctactatacatgagtatattcccaaagggtttccaaatcaggagaaaaagtctaatcaggcgatgggtagctgaaggatatatacagtctgaatatggagacagcgacgaaacggtcgcacatgaaaacttcgagaacctgctcgaccagaatatcattgagccgatgggtgcatgcgacaatgcaagagtgaagacatgcagaactcattctgtcatgcgcgagttcatgctgcacagatccttctgtgatcacttcatcgggtctcttgatacaatgtcagagttagatgacccaagtacctttcgccatctcttcatccagaagtgcacaaatatcaacatcctcaggttggccaagaagaaacttcgtgcccgttctctgacaatctttgggagtggaggaggagcagctgtttcttgtattgccgagtgtgaactgttgcaggccttagatctaaaagaatgcaatgattttgatgataatcttgtcaagggcatcatgaaggacaatctcagtcgtctaaaatatctgagcctcggaagcgctactacgaaacttccaaaggcgattgagaagctacattgtttacatacactcgaattaagcaagacaaatgtagtggcactgcctatagaagtcataaggctgccccatctagttcacctgtttggaaaggtcaagctcaggaaaaagaggagtattcatgcagtgcaggtaatagatgatatcatctcaaacaaagaaagtattgcagaaaagagtaagctgcagactctttcaggatttgttatagacaaagactctataattcctcaacttatggttcatatgaaaagactaagaaaggtcaaggtatggtgtgattccaccggtgaaggaacaactgattggatgaagctcaagaaggctattgaaaattttgttaagtctgaaatggacacagctgttggtgaacgttctctatcactatatctcggggatggcttggagagatttcccgaacttggtgacaatattaaagttgaactaaatggttttgtgagctctttgaagctgcaaggcaagctgaaccaattgcctaattttgatacatcgctgaatggcatcacaaagttgtgcctttcatcaactaatctggaggggcatcattattcagacctgggtaagctgctctgcttgaaatatctcaaactggtcgaaaattaccttgggggctttgtcataaaaatagggactttcccatcccttgagttcctatgcctattgatgccaagctttctatatgctgtacctgaaatccaagaaggagctttgccaaaacttgtttcgcttcagctgctttgtaagcatcttcatggtcttgctggtattaatattaaaaaccatacaaagctccaggaagttgctcttgattcagctgtcagcatggaaaccataaatacttgggaaaatgaagctcagaagcaccccaaaagacccaagcatgtcgatcgtaaagctgttgttccgcaggagctgcaagatcggcgcccgaccaccgtctgttga
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| Protein seq | MKSSCNMIVTTTSHPVANRCTYDGGYIYSTSTLEKKDCDDLLKEILSSENSSDLEQISASIIKRCDGHPLSLVSVANFLQSATGNSRSKSCEKVCRLLGSYVEKQSAFHELREVLMRNYGNLSGPLIKTCLLYMSIFPKGFQIRRKSLIRRWVAEGYIQSEYGDSDETVAHENFENLLDQNIIEPMGACDNARVKTCRTHSVMREFMLHRSFCDHFIGSLDTMSELDDPSTFRHLFIQKCTNINILRLAKKKLRARSLTIFGSGGGAAVSCIAECELLQALDLKECNDFDDNLVKGIMKDNLSRLKYLSLGSATTKLPKAIEKLHCLHTLELSKTNVVALPIEVIRLPHLVHLFGKVKLRKKRSIHAVQVIDDIISNKESIAEKSKLQTLSGFVIDKDSIIPQLMVHMKRLRKVKVWCDSTGEGTTDWMKLKKAIENFVKSEMDTAVGERSLSLYLGDGLERFPELGDNIKVELNGFVSSLKLQGKLNQLPNFDTSLNGITKLCLSSTNLEGHHYSDLGKLLCLKYLKLVENYLGGFVIKIGTFPSLEFLCLLMPSFLYAVPEIQEGALPKLVSLQLLCKHLHGLAGINIKNHTKLQEVALDSAVSMETINTWENEAQKHPKRPKHVDRKAVVPQELQDRRPTTVC |
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| Function | Disease resistance protein RGA4 [UniProtKB/Swiss-Prot:F7J0M6] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLaMu_11g0008000 | OsLaMu_11g0008000.01 | Chr11 | 6907527 | 6909898 | - | NAM | ||
| CDS seq | atgaaatcaagctgcaacatgatagtgacgacgactagtcacccggtggctaacaggtgcacctatgatggtggttacatttacagtacaagtactcttgagaagaaggattgtgatgatttgctaaaagaaatattgagctcggaaaattcaagtgacttggagcagatttcagcatcaattatcaaaagatgtgatggccacccactttctcttgttagtgtggccaactttttgcaaagtgcgaccggtaacagtcgctcaaaaagctgtgaaaaagtttgcaggctgctaggttcttatgtggaaaaacaatctgcattccatgaattgcgagaagttcttatgcgtaactacggcaatttgtctggccctcttatcaagacctgcctactatacatgagtatattcccaaagggtttccaaatcaggagaaaaagtctaatcaggcgatgggtagctgaaggatatatacagtctgaatatggagacagcgacgaaacggtcgcacatgaaaacttcgagaacctgctcgaccagaatatcattgagccgatgggtgcatgcgacaatgcaagagtgaagacatgcagaactcattctgtcatgcgcgagttcatgctgcacagatccttctgtgatcacttcatcgggtctcttgatacaatgtcagagttagatgacccaagtacctttcgccatctcttcatccagaagtgcacaaatatcaacatcctcaggttggccaagaagaaacttcgtgcccgttctctgacaatctttgggagtggaggaggagcagctgtttcttgtattgccgagtgtgaactgttgcaggccttagatctaaaagaatgcaatgattttgatgataatcttgtcaagggcatcatgaaggacaatctcagtcgtctaaaatatctgagcctcggaagcgctactacgaaacttccaaaggcgattgagaagctacattgtttacatacactcgaattaagcaagacaaatgtagtggcactgcctatagaagtcataaggctgccccatctagttcacctgtttggaaaggtcaagctcaggaaaaagaggagtattcatgcagtgcaggtaatagatgatatcatctcaaacaaagaaagtattgcagaaaagagtaagctgcagactctttcaggatttgttatagacaaagactctataattcctcaacttatggttcatatgaaaagactaagaaaggtcaaggtatggtgtgattccaccggtgaaggaacaactgattggatgaagctcaagaaggctattgaaaattttgttaagtctgaaatggacacagctgttggtgaacgttctctatcactatatctcggggatggcttggagagatttcccgaacttggtgacaatattaaagttgaactaaatggttttgtgagctctttgaagctgcaaggcaagctgaaccaattgcctaattttgatacatcgctgaatggcatcacaaagttgtgcctttcatcaactaatctggaggggcatcattattcagacctgggtaagctgctctgcttgaaatatctcaaactggtcgaaaattaccttgggggctttgtcataaaaatagggactttcccatcccttgagttcctatgcctattgatgccaagctttctatatgctgtacctgaaatccaagaaggagctttgccaaaacttgtttcgcttcagctgctttgtaagcatcttcatggtcttgctggtattaatattaaaaaccatacaaagctccaggaagttgctcttgattcagctgtcagcatggaaaccataaatacttgggaaaatgaagctcagaagcaccccaaaagacccaagcatgtcgatcgtaaagctgttgttccgcaggagctgcaagatcggcgcccgaccaccgtctgttga
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| Protein seq | MKSSCNMIVTTTSHPVANRCTYDGGYIYSTSTLEKKDCDDLLKEILSSENSSDLEQISASIIKRCDGHPLSLVSVANFLQSATGNSRSKSCEKVCRLLGSYVEKQSAFHELREVLMRNYGNLSGPLIKTCLLYMSIFPKGFQIRRKSLIRRWVAEGYIQSEYGDSDETVAHENFENLLDQNIIEPMGACDNARVKTCRTHSVMREFMLHRSFCDHFIGSLDTMSELDDPSTFRHLFIQKCTNINILRLAKKKLRARSLTIFGSGGGAAVSCIAECELLQALDLKECNDFDDNLVKGIMKDNLSRLKYLSLGSATTKLPKAIEKLHCLHTLELSKTNVVALPIEVIRLPHLVHLFGKVKLRKKRSIHAVQVIDDIISNKESIAEKSKLQTLSGFVIDKDSIIPQLMVHMKRLRKVKVWCDSTGEGTTDWMKLKKAIENFVKSEMDTAVGERSLSLYLGDGLERFPELGDNIKVELNGFVSSLKLQGKLNQLPNFDTSLNGITKLCLSSTNLEGHHYSDLGKLLCLKYLKLVENYLGGFVIKIGTFPSLEFLCLLMPSFLYAVPEIQEGALPKLVSLQLLCKHLHGLAGINIKNHTKLQEVALDSAVSMETINTWENEAQKHPKRPKHVDRKAVVPQELQDRRPTTVC
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.000000 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_11g0222900 | RBH | 0.067895 | 0.637575 | 0.825293 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os11g11550 | SBH | 0.563842 | 0.409763 | 0.340933 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os11g0222900 | SBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_11g0008040 | SBH | 0.0 | 0.0 | 0.0 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_11g0020050 | RBH | 0.492458 | 1.480033 | 3.188077 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_11g0019800 | SBH | 3.771688 | 4.442852 | 6.131286 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_11g0007800 | SBH | 0.0 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_11g0007880 | SBH | 0.000000 | 0.0 | 0.825569 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_11G0106000 | RBH | 1.373814 | 6.078619 | 1.017997 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_11g0007910 | SBH | 0.0 | 0.126530 | 0.146051 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_11G0111500 | RBH | 5.456746 | 174.322876 | 2.407701 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_Ung0000480 | SBH | 0.026828 | 0.000000 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_11g0007940 | SBH | 0.304020 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_11g0007890 | SBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_11g0007910 | SBH | 0.048286 | 0.0 | 0.000000 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_11g0007990 | RBH | 0.000000 | 0.000000 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_11G008040 | SBH | 0.0 | 0.0 | 0.412711 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_11g0007880 | SBH | 0.0 | 0.0 | 0.0 |
